HEADER BLOOD CLOTTING 12-JUL-21 7FBP TITLE FXIIA-CMCOFX1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XIIA LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-FACTOR XIIA PART 2,FXIIA; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CMCOFX1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS SERINE PROTEASE, INHIBITOR, MACROCYCLIC PEPTIDE, CYCLOTIDE, BLOOD KEYWDS 2 CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR T.SENGOKU,W.LIU,S.J.DE VEER,Y.H.HUANG,C.OKADA,C.N.ZDENEK,B.G.FRY, AUTHOR 2 J.E.SWEDBERG,T.PASSIOURA,D.J.CRAIK,H.SUGA,K.OGATA REVDAT 4 29-NOV-23 7FBP 1 REMARK REVDAT 3 16-FEB-22 7FBP 1 JRNL REVDAT 2 17-NOV-21 7FBP 1 JRNL REVDAT 1 10-NOV-21 7FBP 0 JRNL AUTH W.LIU,S.J.DE VEER,Y.H.HUANG,T.SENGOKU,C.OKADA,K.OGATA, JRNL AUTH 2 C.N.ZDENEK,B.G.FRY,J.E.SWEDBERG,T.PASSIOURA,D.J.CRAIK,H.SUGA JRNL TITL AN ULTRAPOTENT AND SELECTIVE CYCLIC PEPTIDE INHIBITOR OF JRNL TITL 2 HUMAN BETA-FACTOR XIIA IN A CYCLOTIDE SCAFFOLD. JRNL REF J.AM.CHEM.SOC. V. 143 18481 2021 JRNL REFN ESSN 1520-5126 JRNL PMID 34723512 JRNL DOI 10.1021/JACS.1C07574 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0100 - 4.5600 0.99 1300 146 0.1762 0.2095 REMARK 3 2 4.5500 - 3.6200 1.00 1303 141 0.1613 0.1910 REMARK 3 3 3.6200 - 3.1600 1.00 1294 143 0.1821 0.2449 REMARK 3 4 3.1600 - 2.8700 1.00 1279 147 0.1885 0.2631 REMARK 3 5 2.8700 - 2.6600 1.00 1284 135 0.1996 0.2404 REMARK 3 6 2.6600 - 2.5100 1.00 1293 136 0.2156 0.2729 REMARK 3 7 2.5100 - 2.3800 1.00 1265 146 0.2197 0.3021 REMARK 3 8 2.3800 - 2.2800 1.00 1283 140 0.2176 0.3221 REMARK 3 9 2.2800 - 2.1900 0.99 1276 151 0.2593 0.2888 REMARK 3 10 2.1900 - 2.1100 0.99 1259 138 0.2666 0.3032 REMARK 3 11 2.1100 - 2.0500 0.99 1270 139 0.2751 0.3253 REMARK 3 12 2.0500 - 1.9900 0.99 1292 137 0.3015 0.3567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.289 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.995 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2138 REMARK 3 ANGLE : 0.729 2909 REMARK 3 CHIRALITY : 0.046 333 REMARK 3 PLANARITY : 0.005 375 REMARK 3 DIHEDRAL : 19.414 774 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 373:427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.292 -1.710 8.745 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.1799 REMARK 3 T33: 0.2453 T12: 0.0023 REMARK 3 T13: 0.0113 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.2043 L22: 4.1680 REMARK 3 L33: 3.2440 L12: -0.1142 REMARK 3 L13: 0.4865 L23: -1.3348 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.0827 S13: 0.0111 REMARK 3 S21: 0.2924 S22: 0.0196 S23: 0.1362 REMARK 3 S31: -0.0876 S32: -0.0356 S33: -0.0154 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 428:504 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.843 -6.185 7.791 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.1863 REMARK 3 T33: 0.2407 T12: 0.0207 REMARK 3 T13: 0.0216 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.8169 L22: 3.2799 REMARK 3 L33: 1.9671 L12: 0.5380 REMARK 3 L13: 0.3555 L23: 0.3822 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: -0.0547 S13: -0.1315 REMARK 3 S21: 0.1214 S22: -0.0074 S23: -0.0053 REMARK 3 S31: 0.2340 S32: 0.0341 S33: -0.0167 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 505:532 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.773 8.474 -2.789 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.2078 REMARK 3 T33: 0.2261 T12: 0.0134 REMARK 3 T13: -0.0735 T23: 0.0772 REMARK 3 L TENSOR REMARK 3 L11: 4.2054 L22: 4.5761 REMARK 3 L33: 4.4723 L12: 2.1887 REMARK 3 L13: -1.2634 L23: 0.4327 REMARK 3 S TENSOR REMARK 3 S11: -0.1394 S12: 0.0973 S13: -0.0131 REMARK 3 S21: -0.2628 S22: -0.0397 S23: -0.0871 REMARK 3 S31: -0.1211 S32: 0.0801 S33: 0.0817 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 533:613 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.747 4.253 -1.309 REMARK 3 T TENSOR REMARK 3 T11: 0.1642 T22: 0.1864 REMARK 3 T33: 0.2305 T12: -0.0221 REMARK 3 T13: 0.0314 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.8352 L22: 3.0975 REMARK 3 L33: 2.4260 L12: -0.6128 REMARK 3 L13: 0.4603 L23: -0.5096 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.1274 S13: 0.1320 REMARK 3 S21: -0.1285 S22: -0.0227 S23: -0.2890 REMARK 3 S31: -0.0930 S32: 0.0557 S33: 0.0012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.985 15.398 11.699 REMARK 3 T TENSOR REMARK 3 T11: 0.4074 T22: 0.2665 REMARK 3 T33: 0.3991 T12: -0.0235 REMARK 3 T13: 0.0065 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 4.7282 L22: 5.0432 REMARK 3 L33: 4.4146 L12: 0.4277 REMARK 3 L13: 1.3438 L23: 2.6951 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.2052 S13: 0.3757 REMARK 3 S21: 0.4406 S22: -0.0994 S23: 0.2374 REMARK 3 S31: -0.8130 S32: -0.2102 S33: -0.0148 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 15:34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.244 18.918 11.772 REMARK 3 T TENSOR REMARK 3 T11: 0.4215 T22: 0.2898 REMARK 3 T33: 0.4157 T12: -0.0001 REMARK 3 T13: -0.0096 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 8.6886 L22: 5.7091 REMARK 3 L33: 7.0286 L12: -0.8020 REMARK 3 L13: 1.2882 L23: -2.6988 REMARK 3 S TENSOR REMARK 3 S11: 0.2539 S12: -0.3335 S13: -0.5286 REMARK 3 S21: 0.6738 S22: -0.2011 S23: 0.5622 REMARK 3 S31: -0.3801 S32: -0.4008 S33: -0.1030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65611 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 41.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.830 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6B77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM SODIUM ACETATE TRIHYDRATE PH REMARK 280 7.0, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.41500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 490 REMARK 465 ALA A 491 REMARK 465 ALA A 492 REMARK 465 ARG A 493 REMARK 465 PRO A 494 REMARK 465 SER A 495 REMARK 465 GLU A 496 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 577 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASP B 1 O TYR B 34 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 384 50.84 -143.87 REMARK 500 CYS A 475 -94.94 -113.13 REMARK 500 VAL A 537 -97.24 -107.68 REMARK 500 ALA A 574 -32.10 -138.57 REMARK 500 SER A 585 -69.79 -125.45 REMARK 500 ARG B 7 33.63 -99.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 828 DISTANCE = 6.02 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG C 6 DBREF 7FBP A 373 613 UNP P00748 FA12_HUMAN 373 613 DBREF 7FBP B 1 34 PDB 7FBP 7FBP 1 34 SEQRES 1 A 241 VAL VAL GLY GLY LEU VAL ALA LEU ARG GLY ALA HIS PRO SEQRES 2 A 241 TYR ILE ALA ALA LEU TYR TRP GLY HIS SER PHE CYS ALA SEQRES 3 A 241 GLY SER LEU ILE ALA PRO CYS TRP VAL LEU THR ALA ALA SEQRES 4 A 241 HIS CYS LEU GLN ASP ARG PRO ALA PRO GLU ASP LEU THR SEQRES 5 A 241 VAL VAL LEU GLY GLN GLU ARG ARG ASN HIS SER CYS GLU SEQRES 6 A 241 PRO CYS GLN THR LEU ALA VAL ARG SER TYR ARG LEU HIS SEQRES 7 A 241 GLU ALA PHE SER PRO VAL SER TYR GLN HIS ASP LEU ALA SEQRES 8 A 241 LEU LEU ARG LEU GLN GLU ASP ALA ASP GLY SER CYS ALA SEQRES 9 A 241 LEU LEU SER PRO TYR VAL GLN PRO VAL CYS LEU PRO SER SEQRES 10 A 241 GLY ALA ALA ARG PRO SER GLU THR THR LEU CYS GLN VAL SEQRES 11 A 241 ALA GLY TRP GLY HIS GLN PHE GLU GLY ALA GLU GLU TYR SEQRES 12 A 241 ALA SER PHE LEU GLN GLU ALA GLN VAL PRO PHE LEU SER SEQRES 13 A 241 LEU GLU ARG CYS SER ALA PRO ASP VAL HIS GLY SER SER SEQRES 14 A 241 ILE LEU PRO GLY MET LEU CYS ALA GLY PHE LEU GLU GLY SEQRES 15 A 241 GLY THR ASP ALA CYS GLN GLY ASP SER GLY GLY PRO LEU SEQRES 16 A 241 VAL CYS GLU ASP GLN ALA ALA GLU ARG ARG LEU THR LEU SEQRES 17 A 241 GLN GLY ILE ILE SER TRP GLY SER GLY CYS GLY ASP ARG SEQRES 18 A 241 ASN LYS PRO GLY VAL TYR THR ASP VAL ALA TYR TYR LEU SEQRES 19 A 241 ALA TRP ILE ARG GLU HIS THR SEQRES 1 B 34 ASP GLY GLY ILE CYS PRO ARG ILE GLY ARG LEU CYS ARG SEQRES 2 B 34 ARG ASP SER ASP CYS PRO GLY ALA CYS ILE CYS ARG ALA SEQRES 3 B 34 THR ARG PHE CYS GLY SER GLY TYR HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET NAG C 6 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 4 HOH *148(H2 O) HELIX 1 AA1 ALA A 410 GLN A 415 5 6 HELIX 2 AA2 ALA A 419 ASP A 422 5 4 HELIX 3 AA3 SER A 528 SER A 533 1 6 HELIX 4 AA4 HIS A 538 ILE A 542 5 5 HELIX 5 AA5 TYR A 605 HIS A 612 1 8 HELIX 6 AA6 ARG B 14 CYS B 18 5 5 SHEET 1 AA1 8 LEU A 377 VAL A 378 0 SHEET 2 AA1 8 GLN A 520 VAL A 524 -1 O GLU A 521 N LEU A 377 SHEET 3 AA1 8 THR A 498 GLY A 504 -1 N VAL A 502 O ALA A 522 SHEET 4 AA1 8 PRO A 566 ASP A 571 -1 O GLU A 570 N LEU A 499 SHEET 5 AA1 8 THR A 579 GLY A 587 -1 O THR A 579 N CYS A 569 SHEET 6 AA1 8 GLY A 597 ASP A 601 -1 O THR A 600 N ILE A 583 SHEET 7 AA1 8 MET A 546 ALA A 549 -1 N LEU A 547 O TYR A 599 SHEET 8 AA1 8 PHE A 526 LEU A 527 -1 N LEU A 527 O CYS A 548 SHEET 1 AA2 6 LEU A 377 VAL A 378 0 SHEET 2 AA2 6 GLN A 520 VAL A 524 -1 O GLU A 521 N LEU A 377 SHEET 3 AA2 6 THR A 498 GLY A 504 -1 N VAL A 502 O ALA A 522 SHEET 4 AA2 6 PRO A 566 ASP A 571 -1 O GLU A 570 N LEU A 499 SHEET 5 AA2 6 THR A 579 GLY A 587 -1 O THR A 579 N CYS A 569 SHEET 6 AA2 6 CYS B 5 PRO B 6 -1 O CYS B 5 N GLY A 587 SHEET 1 AA3 8 GLY B 9 ARG B 10 0 SHEET 2 AA3 8 SER A 395 ALA A 403 -1 N PHE A 396 O GLY B 9 SHEET 3 AA3 8 TRP A 406 THR A 409 -1 O LEU A 408 N SER A 400 SHEET 4 AA3 8 ALA A 463 LEU A 467 -1 O LEU A 465 N VAL A 407 SHEET 5 AA3 8 GLN A 440 LEU A 449 -1 N SER A 446 O ARG A 466 SHEET 6 AA3 8 THR A 424 LEU A 427 -1 N VAL A 425 O LEU A 442 SHEET 7 AA3 8 ILE A 387 TRP A 392 -1 N TYR A 391 O THR A 424 SHEET 8 AA3 8 SER A 395 ALA A 403 -1 O GLY A 399 N ALA A 388 SHEET 1 AA4 2 ILE B 23 CYS B 24 0 SHEET 2 AA4 2 CYS B 30 GLY B 31 -1 O GLY B 31 N ILE B 23 SSBOND 1 CYS A 397 CYS A 413 1555 1555 2.04 SSBOND 2 CYS A 405 CYS A 475 1555 1555 2.04 SSBOND 3 CYS A 436 CYS A 439 1555 1555 2.04 SSBOND 4 CYS A 500 CYS A 569 1555 1555 2.04 SSBOND 5 CYS A 532 CYS A 548 1555 1555 2.04 SSBOND 6 CYS A 559 CYS A 590 1555 1555 2.04 SSBOND 7 CYS B 5 CYS B 22 1555 1555 2.03 SSBOND 8 CYS B 12 CYS B 24 1555 1555 2.05 SSBOND 9 CYS B 18 CYS B 30 1555 1555 2.04 LINK ND2 ASN A 433 C1 NAG C 1 1555 1555 1.43 LINK N ASP B 1 C TYR B 34 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 MAN C 4 C1 NAG C 5 1555 1555 1.43 LINK O4 NAG C 5 C1 NAG C 6 1555 1555 1.43 CRYST1 40.190 76.830 41.020 90.00 91.39 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024882 0.000000 0.000605 0.00000 SCALE2 0.000000 0.013016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024386 0.00000