HEADER OXIDOREDUCTASE 30-JUL-21 7FHR TITLE CRYSTAL STRUCTURE OF A RIESKE OXYGENASE FROM CUPRIAVIDUS METALLIDURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHTHALATE 4,5-DIOXYGENASE, SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.12.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS METALLIDURANS CH34; SOURCE 3 ORGANISM_COMMON: RALSTONIA METALLIDURANS; SOURCE 4 ORGANISM_TAXID: 266264; SOURCE 5 STRAIN: CH34; SOURCE 6 GENE: RMET_5548; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS DIOXYGENASE, BACTERIAL PROTEIN, METALLOPROTEIN, RIESKE DOMAIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.MAHTO,P.DHANKHAR,P.KUMAR REVDAT 3 29-MAY-24 7FHR 1 REMARK REVDAT 2 16-FEB-22 7FHR 1 JRNL REVDAT 1 15-DEC-21 7FHR 0 JRNL AUTH J.K.MAHTO,N.NEETU,B.WAGHMODE,E.KUATSJAH,M.SHARMA,D.SIRCAR, JRNL AUTH 2 A.K.SHARMA,S.TOMAR,L.D.ELTIS,P.KUMAR JRNL TITL MOLECULAR INSIGHTS INTO SUBSTRATE RECOGNITION AND CATALYSIS JRNL TITL 2 BY PHTHALATE DIOXYGENASE FROM COMAMONAS TESTOSTERONI. JRNL REF J.BIOL.CHEM. V. 297 01416 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34800435 JRNL DOI 10.1016/J.JBC.2021.101416 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2825 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.57000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.038 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3628 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4910 ; 1.719 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 7.265 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;33.895 ;21.524 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;16.089 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2858 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 439 REMARK 3 RESIDUE RANGE : A 501 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): -27.129 -17.396 -0.303 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.1354 REMARK 3 T33: 0.0116 T12: -0.0614 REMARK 3 T13: 0.0314 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.3992 L22: 0.3990 REMARK 3 L33: 0.1321 L12: -0.0702 REMARK 3 L13: -0.0164 L23: -0.0616 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.0088 S13: -0.0124 REMARK 3 S21: -0.0734 S22: 0.0771 S23: -0.0158 REMARK 3 S31: -0.0549 S32: 0.1003 S33: -0.0248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7FHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7377 REMARK 200 MONOCHROMATOR : FE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40987 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 77.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLYCINE, LYSINE, GLUTAMATE, PEG 4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.79500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.79500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -103.41600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -51.70800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -89.56088 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 VAL A 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 71 -83.46 -72.12 REMARK 500 PRO A 108 150.36 -45.28 REMARK 500 PRO A 226 4.25 -64.13 REMARK 500 PHE A 241 26.19 -148.16 REMARK 500 LYS A 337 -38.68 -137.24 REMARK 500 PRO A 343 47.15 -77.33 REMARK 500 ALA A 400 76.76 -153.49 REMARK 500 TYR A 437 -179.91 -170.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 940 DISTANCE = 6.72 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 506 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 FES A 506 S1 111.5 REMARK 620 3 FES A 506 S2 111.7 103.3 REMARK 620 4 CYS A 88 SG 109.4 106.5 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 506 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 ND1 REMARK 620 2 FES A 506 S1 114.6 REMARK 620 3 FES A 506 S2 114.8 104.3 REMARK 620 4 HIS A 91 ND1 89.6 118.4 115.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 507 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 181 NE2 REMARK 620 2 HIS A 186 NE2 111.3 REMARK 620 3 ASP A 349 OD1 97.9 107.5 REMARK 620 4 ASP A 349 OD2 149.8 90.7 54.5 REMARK 620 5 GLU A 504 O 92.5 84.9 159.3 110.3 REMARK 620 6 GLU A 504 OXT 112.9 119.7 104.8 69.3 54.6 REMARK 620 N 1 2 3 4 5 DBREF 7FHR A 1 439 UNP Q1LBR9 Q1LBR9_CUPMC 1 439 SEQADV 7FHR SER A -1 UNP Q1LBR9 EXPRESSION TAG SEQADV 7FHR HIS A 0 UNP Q1LBR9 EXPRESSION TAG SEQRES 1 A 441 SER HIS MET LEU SER ARG GLU ASP ASN GLU LEU LEU VAL SEQRES 2 A 441 ARG VAL GLY PRO GLY THR ALA MET GLY THR MET MET ARG SEQRES 3 A 441 LEU TYR TRP ILE PRO PHE LEU LYS SER SER GLU VAL THR SEQRES 4 A 441 ALA GLY GLY GLN PRO TYR ARG VAL ARG LEU LEU GLY GLU SEQRES 5 A 441 ASP LEU VAL ALA PHE ARG ASP ASN SER GLY ASN VAL GLY SEQRES 6 A 441 LEU VAL ASP HIS THR CYS PRO HIS ARG GLY ALA PRO MET SEQRES 7 A 441 VAL PHE GLY ARG ASN GLU ASN ASP GLY LEU ARG CYS VAL SEQRES 8 A 441 TYR HIS GLY TRP LYS PHE LYS VAL SER GLY GLN CYS GLU SEQRES 9 A 441 GLU MET PRO CYS GLU PRO ALA ASP SER PRO MET CYS LYS SEQRES 10 A 441 ARG MET LYS ILE LYS ALA TYR PRO VAL LYS GLU ARG ASN SEQRES 11 A 441 GLY ILE LEU TRP ALA TYR MET GLY PRO ASP ALA GLU ASN SEQRES 12 A 441 ALA PRO GLU LEU PRO ASP VAL GLU TRP ASN MET VAL PRO SEQRES 13 A 441 GLU GLU GLN VAL ALA ILE SER MET ARG VAL GLN GLU CYS SEQRES 14 A 441 ASN TRP LEU GLN ALA LEU GLU GLY GLU LEU ASP SER ALA SEQRES 15 A 441 HIS ALA ALA ILE LEU HIS GLY ARG VAL GLY GLU GLY GLY SEQRES 16 A 441 VAL ILE ASN GLN TRP ARG GLN ALA GLN ASP LEU SER PRO SEQRES 17 A 441 THR PHE GLU CYS VAL GLN HIS ASP ALA GLY ILE SER ILE SEQRES 18 A 441 GLY ALA ARG ARG LYS THR PRO ASP GLY GLU ASN TYR VAL SEQRES 19 A 441 ARG VAL ASN GLN PHE LEU MET PRO PHE TRP THR LEU VAL SEQRES 20 A 441 PRO PRO GLN SER GLN PHE PRO GLU LEU SER GLY HIS ALA SEQRES 21 A 441 TRP VAL PRO ILE ASP ASP GLU HIS THR LEU CYS LEU MET SEQRES 22 A 441 PHE SER TYR HIS PRO ALA LYS PRO PHE TYR GLU ARG THR SEQRES 23 A 441 ARG LYS LEU PHE LYS GLU GLY HIS ASN GLY ARG GLU THR SEQRES 24 A 441 GLY HIS HIS SER ASP ASN ALA PHE GLU LYS ARG PRO VAL SEQRES 25 A 441 THR GLU PRO TYR HIS THR TYR TRP SER LYS PHE ASN ARG SEQRES 26 A 441 GLY ASN ALA TYR GLN PHE ASP TYR GLN SER GLN VAL GLU SEQRES 27 A 441 LYS TYR ASN SER GLY MET PRO GLY LEU TRP ILE GLN ASP SEQRES 28 A 441 ALA ALA CYS GLN SER GLY THR THR PRO ILE LEU ASP ARG SEQRES 29 A 441 SER LYS GLU HIS LEU GLY THR SER ASP THR GLY VAL ALA SEQRES 30 A 441 ARG MET ARG ARG VAL LEU LEU GLU ALA VAL LYS LYS LEU SEQRES 31 A 441 VAL ALA THR GLY GLU HIS PRO VAL SER SER ASN ALA PRO SEQRES 32 A 441 ALA ALA PHE ARG TRP ARG ALA VAL SER LEU THR ILE PRO SEQRES 33 A 441 LEU GLY GLY ASP TRP THR LYS LEU GLY GLU GLU ALA MET SEQRES 34 A 441 ARG ALA GLU PRO GLY LYS ASP PHE GLY TYR THR PRO HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET GLU A 504 10 HET GLY A 505 5 HET FES A 506 4 HET FE2 A 507 1 HET EDO A 508 4 HET GOL A 509 6 HETNAM EDO 1,2-ETHANEDIOL HETNAM GLU GLUTAMIC ACID HETNAM GLY GLYCINE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM FE2 FE (II) ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 5 GLU C5 H9 N O4 FORMUL 6 GLY C2 H5 N O2 FORMUL 7 FES FE2 S2 FORMUL 8 FE2 FE 2+ FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *340(H2 O) HELIX 1 AA1 SER A 3 ARG A 12 1 10 HELIX 2 AA2 THR A 17 ARG A 24 1 8 HELIX 3 AA3 SER A 34 VAL A 36 5 3 HELIX 4 AA4 PRO A 75 GLY A 79 5 5 HELIX 5 AA5 PRO A 112 MET A 117 1 6 HELIX 6 AA6 ASP A 138 ALA A 142 5 5 HELIX 7 AA7 VAL A 148 MET A 152 5 5 HELIX 8 AA8 PRO A 154 GLU A 156 5 3 HELIX 9 AA9 ASN A 168 GLY A 175 1 8 HELIX 10 AB1 GLU A 176 LEU A 177 5 2 HELIX 11 AB2 ASP A 178 SER A 179 5 2 HELIX 12 AB3 ALA A 180 HIS A 186 1 7 HELIX 13 AB4 TRP A 198 ASP A 203 5 6 HELIX 14 AB5 TYR A 281 GLY A 291 1 11 HELIX 15 AB6 ASN A 322 PHE A 329 5 8 HELIX 16 AB7 ASP A 330 LYS A 337 1 8 HELIX 17 AB8 GLY A 344 SER A 354 1 11 HELIX 18 AB9 ASP A 361 GLU A 365 5 5 HELIX 19 AC1 GLY A 368 SER A 370 5 3 HELIX 20 AC2 ASP A 371 GLY A 392 1 22 HELIX 21 AC3 PRO A 395 ARG A 405 5 11 HELIX 22 AC4 ASP A 418 GLY A 423 1 6 SHEET 1 AA1 3 ILE A 28 LYS A 32 0 SHEET 2 AA1 3 ILE A 130 ALA A 133 -1 O LEU A 131 N LEU A 31 SHEET 3 AA1 3 VAL A 124 ARG A 127 -1 N LYS A 125 O TRP A 132 SHEET 1 AA2 4 TYR A 43 LEU A 47 0 SHEET 2 AA2 4 GLU A 50 ARG A 56 -1 O LEU A 52 N VAL A 45 SHEET 3 AA2 4 VAL A 62 ASP A 66 -1 O VAL A 65 N VAL A 53 SHEET 4 AA2 4 ALA A 121 TYR A 122 -1 O TYR A 122 N LEU A 64 SHEET 1 AA3 4 ARG A 80 ASN A 81 0 SHEET 2 AA3 4 LEU A 86 ARG A 87 -1 O ARG A 87 N ARG A 80 SHEET 3 AA3 4 LYS A 94 PHE A 95 -1 O PHE A 95 N LEU A 86 SHEET 4 AA3 4 CYS A 101 GLU A 103 -1 O GLU A 102 N LYS A 94 SHEET 1 AA4 7 VAL A 158 GLN A 165 0 SHEET 2 AA4 7 HIS A 266 TYR A 274 -1 O CYS A 269 N ARG A 163 SHEET 3 AA4 7 LEU A 254 ASP A 263 -1 N VAL A 260 O LEU A 268 SHEET 4 AA4 7 TRP A 242 VAL A 245 -1 N VAL A 245 O SER A 255 SHEET 5 AA4 7 GLU A 229 LEU A 238 -1 N LEU A 238 O TRP A 242 SHEET 6 AA4 7 GLY A 216 LYS A 224 -1 N ALA A 221 O ARG A 233 SHEET 7 AA4 7 THR A 207 HIS A 213 -1 N GLU A 209 O GLY A 220 SHEET 1 AA5 6 VAL A 158 GLN A 165 0 SHEET 2 AA5 6 HIS A 266 TYR A 274 -1 O CYS A 269 N ARG A 163 SHEET 3 AA5 6 LEU A 254 ASP A 263 -1 N VAL A 260 O LEU A 268 SHEET 4 AA5 6 TRP A 242 VAL A 245 -1 N VAL A 245 O SER A 255 SHEET 5 AA5 6 GLU A 229 LEU A 238 -1 N LEU A 238 O TRP A 242 SHEET 6 AA5 6 VAL A 409 PRO A 414 -1 O ILE A 413 N ASN A 230 LINK SG CYS A 69 FE2 FES A 506 1555 1555 2.23 LINK ND1 HIS A 71 FE1 FES A 506 1555 1555 2.11 LINK SG CYS A 88 FE2 FES A 506 1555 1555 2.34 LINK ND1 HIS A 91 FE1 FES A 506 1555 1555 2.10 LINK NE2 HIS A 181 FE FE2 A 507 1555 1555 1.95 LINK NE2 HIS A 186 FE FE2 A 507 1555 1555 1.98 LINK OD1 ASP A 349 FE FE2 A 507 1555 1555 2.00 LINK OD2 ASP A 349 FE FE2 A 507 1555 1555 2.54 LINK O GLU A 504 FE FE2 A 507 1555 1555 2.53 LINK OXT GLU A 504 FE FE2 A 507 1555 1555 1.81 CISPEP 1 MET A 239 PRO A 240 0 -6.52 CRYST1 103.416 103.416 77.590 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009670 0.005583 0.000000 0.00000 SCALE2 0.000000 0.011166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012888 0.00000