HEADER IMMUNE SYSTEM 30-JUL-21 7FI8 TITLE CRYSTAL STRUCTURE OF HUMAN MICA MUTANTS IN COMPLEX WITH NATURAL KILLER TITLE 2 CELL RECEPTOR NKG2D COMPND MOL_ID: 1; COMPND 2 MOLECULE: NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY K MEMBER 1,NK COMPND 5 CELL RECEPTOR D,NKG2-D-ACTIVATING NK RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE A; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: MIC-A; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLRK1, D12S2489E, NKG2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MICA, PERB11.1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NKG2D, MICA, THERMAL STABILITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.CAI,S.PENG,T.XU,Y.TIAN,Y.LI,J.LIU REVDAT 3 06-NOV-24 7FI8 1 REMARK REVDAT 2 29-NOV-23 7FI8 1 REMARK REVDAT 1 31-AUG-22 7FI8 0 JRNL AUTH W.CAI,S.PENG,T.XU,Y.TIAN,Y.LI,J.LIU JRNL TITL CRYSTAL STRUCTURE OF HUMAN MICA MUTANTS IN COMPLEX WITH JRNL TITL 2 NATURAL KILLER CELL RECEPTOR NKG2D JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.94000 REMARK 3 B22 (A**2) : -3.94000 REMARK 3 B33 (A**2) : 7.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.895 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.362 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.341 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4258 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3684 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5778 ; 1.689 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8604 ; 1.234 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 8.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;37.378 ;23.017 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 729 ;20.416 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.795 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4740 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 910 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7FI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.971 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 25.70 REMARK 200 R MERGE (I) : 0.25100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 26.50 REMARK 200 R MERGE FOR SHELL (I) : 2.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1HYR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1 M TRIS PH 8.7, 1% GLYCEROL, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.74050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.74050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.74050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.74050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.74050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.74050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.74050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.74050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 78 REMARK 465 GLU A 79 REMARK 465 ASN A 80 REMARK 465 SER A 81 REMARK 465 LEU A 82 REMARK 465 PHE A 83 REMARK 465 ASN A 84 REMARK 465 GLN A 85 REMARK 465 GLU A 86 REMARK 465 VAL A 87 REMARK 465 GLN A 88 REMARK 465 ILE A 89 REMARK 465 PRO A 90 REMARK 465 LEU A 91 REMARK 465 THR A 92 REMARK 465 VAL A 216 REMARK 465 MET B 78 REMARK 465 GLU B 79 REMARK 465 ASN B 80 REMARK 465 SER B 81 REMARK 465 LEU B 82 REMARK 465 PHE B 83 REMARK 465 ASN B 84 REMARK 465 GLN B 85 REMARK 465 GLU B 86 REMARK 465 VAL B 87 REMARK 465 GLN B 88 REMARK 465 ILE B 89 REMARK 465 PRO B 90 REMARK 465 VAL B 216 REMARK 465 PRO C 45 REMARK 465 GLN C 46 REMARK 465 GLY C 47 REMARK 465 GLN C 48 REMARK 465 TRP C 49 REMARK 465 ALA C 50 REMARK 465 GLU C 51 REMARK 465 ASP C 52 REMARK 465 VAL C 53 REMARK 465 LEU C 54 REMARK 465 GLY C 55 REMARK 465 ASN C 56 REMARK 465 LYS C 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASP C 236 O HOH C 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU B 93 O GLU B 93 8554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 100 151.85 -41.29 REMARK 500 ASN A 102 48.92 -104.11 REMARK 500 GLN A 130 38.60 -144.27 REMARK 500 ASN A 131 39.62 35.82 REMARK 500 SER A 151 -165.36 65.55 REMARK 500 MET A 184 -79.06 -119.46 REMARK 500 PRO B 100 153.35 -45.59 REMARK 500 TYR B 106 105.52 -160.03 REMARK 500 GLN B 130 43.29 -144.56 REMARK 500 ASN B 131 42.28 32.64 REMARK 500 SER B 151 -164.69 65.70 REMARK 500 MET B 184 -74.84 -120.29 REMARK 500 PHE C 33 -49.79 -148.98 REMARK 500 TRP C 59 45.76 -147.15 REMARK 500 ASP C 82 31.05 71.94 REMARK 500 GLN C 83 81.17 -55.30 REMARK 500 GLU C 85 142.66 -27.83 REMARK 500 ASP C 113 53.78 37.80 REMARK 500 LEU C 118 137.89 -174.85 REMARK 500 PRO C 130 -169.09 -62.27 REMARK 500 SER C 132 122.04 -37.09 REMARK 500 ASP C 149 94.94 -60.66 REMARK 500 ARG C 179 64.34 -113.96 REMARK 500 ALA C 193 105.68 -59.55 REMARK 500 LEU C 214 100.07 -160.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 7FI8 A 80 216 UNP P26718 NKG2D_HUMAN 80 216 DBREF 7FI8 B 80 216 UNP P26718 NKG2D_HUMAN 80 216 DBREF 7FI8 C 1 274 UNP Q29983 MICA_HUMAN 24 297 SEQADV 7FI8 MET A 78 UNP P26718 INITIATING METHIONINE SEQADV 7FI8 GLU A 79 UNP P26718 EXPRESSION TAG SEQADV 7FI8 MET B 78 UNP P26718 INITIATING METHIONINE SEQADV 7FI8 GLU B 79 UNP P26718 EXPRESSION TAG SEQADV 7FI8 MET C 0 UNP Q29983 INITIATING METHIONINE SEQADV 7FI8 ILE C 13 UNP Q29983 SER 36 ENGINEERED MUTATION SEQADV 7FI8 ILE C 108 UNP Q29983 GLN 131 ENGINEERED MUTATION SEQADV 7FI8 ASN C 120 UNP Q29983 GLN 143 ENGINEERED MUTATION SEQADV 7FI8 TRP C 146 UNP Q29983 LEU 169 ENGINEERED MUTATION SEQADV 7FI8 TRP C 157 UNP Q29983 TYR 180 ENGINEERED MUTATION SEQRES 1 A 139 MET GLU ASN SER LEU PHE ASN GLN GLU VAL GLN ILE PRO SEQRES 2 A 139 LEU THR GLU SER TYR CYS GLY PRO CYS PRO LYS ASN TRP SEQRES 3 A 139 ILE CYS TYR LYS ASN ASN CYS TYR GLN PHE PHE ASP GLU SEQRES 4 A 139 SER LYS ASN TRP TYR GLU SER GLN ALA SER CYS MET SER SEQRES 5 A 139 GLN ASN ALA SER LEU LEU LYS VAL TYR SER LYS GLU ASP SEQRES 6 A 139 GLN ASP LEU LEU LYS LEU VAL LYS SER TYR HIS TRP MET SEQRES 7 A 139 GLY LEU VAL HIS ILE PRO THR ASN GLY SER TRP GLN TRP SEQRES 8 A 139 GLU ASP GLY SER ILE LEU SER PRO ASN LEU LEU THR ILE SEQRES 9 A 139 ILE GLU MET GLN LYS GLY ASP CYS ALA LEU TYR ALA SER SEQRES 10 A 139 SER PHE LYS GLY TYR ILE GLU ASN CYS SER THR PRO ASN SEQRES 11 A 139 THR TYR ILE CYS MET GLN ARG THR VAL SEQRES 1 B 139 MET GLU ASN SER LEU PHE ASN GLN GLU VAL GLN ILE PRO SEQRES 2 B 139 LEU THR GLU SER TYR CYS GLY PRO CYS PRO LYS ASN TRP SEQRES 3 B 139 ILE CYS TYR LYS ASN ASN CYS TYR GLN PHE PHE ASP GLU SEQRES 4 B 139 SER LYS ASN TRP TYR GLU SER GLN ALA SER CYS MET SER SEQRES 5 B 139 GLN ASN ALA SER LEU LEU LYS VAL TYR SER LYS GLU ASP SEQRES 6 B 139 GLN ASP LEU LEU LYS LEU VAL LYS SER TYR HIS TRP MET SEQRES 7 B 139 GLY LEU VAL HIS ILE PRO THR ASN GLY SER TRP GLN TRP SEQRES 8 B 139 GLU ASP GLY SER ILE LEU SER PRO ASN LEU LEU THR ILE SEQRES 9 B 139 ILE GLU MET GLN LYS GLY ASP CYS ALA LEU TYR ALA SER SEQRES 10 B 139 SER PHE LYS GLY TYR ILE GLU ASN CYS SER THR PRO ASN SEQRES 11 B 139 THR TYR ILE CYS MET GLN ARG THR VAL SEQRES 1 C 275 MET GLU PRO HIS SER LEU ARG TYR ASN LEU THR VAL LEU SEQRES 2 C 275 ILE TRP ASP GLY SER VAL GLN SER GLY PHE LEU THR GLU SEQRES 3 C 275 VAL HIS LEU ASP GLY GLN PRO PHE LEU ARG CYS ASP ARG SEQRES 4 C 275 GLN LYS CYS ARG ALA LYS PRO GLN GLY GLN TRP ALA GLU SEQRES 5 C 275 ASP VAL LEU GLY ASN LYS THR TRP ASP ARG GLU THR ARG SEQRES 6 C 275 ASP LEU THR GLY ASN GLY LYS ASP LEU ARG MET THR LEU SEQRES 7 C 275 ALA HIS ILE LYS ASP GLN LYS GLU GLY LEU HIS SER LEU SEQRES 8 C 275 GLN GLU ILE ARG VAL CYS GLU ILE HIS GLU ASP ASN SER SEQRES 9 C 275 THR ARG SER SER ILE HIS PHE TYR TYR ASP GLY GLU LEU SEQRES 10 C 275 PHE LEU SER ASN ASN LEU GLU THR LYS GLU TRP THR MET SEQRES 11 C 275 PRO GLN SER SER ARG ALA GLN THR LEU ALA MET ASN VAL SEQRES 12 C 275 ARG ASN PHE TRP LYS GLU ASP ALA MET LYS THR LYS THR SEQRES 13 C 275 HIS TRP HIS ALA MET HIS ALA ASP CYS LEU GLN GLU LEU SEQRES 14 C 275 ARG ARG TYR LEU LYS SER GLY VAL VAL LEU ARG ARG THR SEQRES 15 C 275 VAL PRO PRO MET VAL ASN VAL THR ARG SER GLU ALA SER SEQRES 16 C 275 GLU GLY ASN ILE THR VAL THR CYS ARG ALA SER GLY PHE SEQRES 17 C 275 TYR PRO TRP ASN ILE THR LEU SER TRP ARG GLN ASP GLY SEQRES 18 C 275 VAL SER LEU SER HIS ASP THR GLN GLN TRP GLY ASP VAL SEQRES 19 C 275 LEU PRO ASP GLY ASN GLY THR TYR GLN THR TRP VAL ALA SEQRES 20 C 275 THR ARG ILE CYS GLN GLY GLU GLU GLN ARG PHE THR CYS SEQRES 21 C 275 TYR MET GLU HIS SER GLY ASN HIS SER THR HIS PRO VAL SEQRES 22 C 275 PRO SER FORMUL 4 HOH *11(H2 O) HELIX 1 AA1 ASN A 119 SER A 129 1 11 HELIX 2 AA2 GLN A 143 VAL A 149 5 7 HELIX 3 AA3 ASN B 119 SER B 129 1 11 HELIX 4 AA4 GLN B 143 VAL B 149 5 7 HELIX 5 AA5 TRP C 59 HIS C 79 1 21 HELIX 6 AA6 SER C 132 ASP C 149 1 18 HELIX 7 AA7 THR C 153 SER C 174 1 22 HELIX 8 AA8 SER C 224 ASP C 226 5 3 HELIX 9 AA9 GLU C 253 GLN C 255 5 3 SHEET 1 AA1 2 CYS A 96 CYS A 99 0 SHEET 2 AA1 2 SER B 94 CYS B 96 -1 O CYS B 96 N CYS A 96 SHEET 1 AA2 4 ILE A 104 CYS A 105 0 SHEET 2 AA2 4 CYS A 110 LYS A 118 -1 O TYR A 111 N ILE A 104 SHEET 3 AA2 4 ASN A 207 GLN A 213 -1 O GLN A 213 N CYS A 110 SHEET 4 AA2 4 SER A 133 LEU A 134 -1 N SER A 133 O MET A 212 SHEET 1 AA3 5 SER A 165 GLN A 167 0 SHEET 2 AA3 5 TYR A 152 ILE A 160 -1 N ILE A 160 O SER A 165 SHEET 3 AA3 5 CYS A 189 ALA A 193 -1 O TYR A 192 N HIS A 153 SHEET 4 AA3 5 LYS A 197 GLU A 201 -1 O TYR A 199 N LEU A 191 SHEET 5 AA3 5 THR A 180 GLU A 183 1 N ILE A 182 O GLY A 198 SHEET 1 AA4 4 ILE B 104 CYS B 105 0 SHEET 2 AA4 4 ASN B 109 LYS B 118 -1 O TYR B 111 N ILE B 104 SHEET 3 AA4 4 ASN B 207 ARG B 214 -1 O GLN B 213 N CYS B 110 SHEET 4 AA4 4 SER B 133 LEU B 134 -1 N SER B 133 O MET B 212 SHEET 1 AA5 5 TRP B 166 GLN B 167 0 SHEET 2 AA5 5 HIS B 153 HIS B 159 -1 N VAL B 158 O GLN B 167 SHEET 3 AA5 5 CYS B 189 ALA B 193 -1 O TYR B 192 N HIS B 153 SHEET 4 AA5 5 LYS B 197 GLU B 201 -1 O TYR B 199 N LEU B 191 SHEET 5 AA5 5 THR B 180 GLU B 183 1 N ILE B 182 O GLY B 198 SHEET 1 AA6 8 CYS C 41 ARG C 42 0 SHEET 2 AA6 8 GLN C 31 CYS C 36 -1 N ARG C 35 O ARG C 42 SHEET 3 AA6 8 SER C 17 LEU C 28 -1 N LEU C 28 O GLN C 31 SHEET 4 AA6 8 HIS C 3 TRP C 14 -1 N LEU C 12 O GLN C 19 SHEET 5 AA6 8 LEU C 87 ILE C 98 -1 O ILE C 98 N HIS C 3 SHEET 6 AA6 8 THR C 104 TYR C 112 -1 O HIS C 109 N ILE C 93 SHEET 7 AA6 8 GLU C 115 ASN C 121 -1 O ASN C 120 N ILE C 108 SHEET 8 AA6 8 TRP C 127 THR C 128 -1 O THR C 128 N SER C 119 SHEET 1 AA7 4 MET C 185 SER C 194 0 SHEET 2 AA7 4 ASN C 197 PHE C 207 -1 O THR C 199 N SER C 191 SHEET 3 AA7 4 TYR C 241 CYS C 250 -1 O VAL C 245 N CYS C 202 SHEET 4 AA7 4 GLN C 228 TRP C 230 -1 N GLN C 229 O ALA C 246 SHEET 1 AA8 4 MET C 185 SER C 194 0 SHEET 2 AA8 4 ASN C 197 PHE C 207 -1 O THR C 199 N SER C 191 SHEET 3 AA8 4 TYR C 241 CYS C 250 -1 O VAL C 245 N CYS C 202 SHEET 4 AA8 4 LEU C 234 PRO C 235 -1 N LEU C 234 O GLN C 242 SHEET 1 AA9 4 VAL C 221 SER C 222 0 SHEET 2 AA9 4 THR C 213 GLN C 218 -1 N GLN C 218 O VAL C 221 SHEET 3 AA9 4 PHE C 257 HIS C 263 -1 O TYR C 260 N SER C 215 SHEET 4 AA9 4 ASN C 266 PRO C 271 -1 O HIS C 270 N CYS C 259 SSBOND 1 CYS A 96 CYS A 105 1555 1555 2.08 SSBOND 2 CYS A 99 CYS A 110 1555 1555 2.06 SSBOND 3 CYS A 127 CYS A 211 1555 1555 2.09 SSBOND 4 CYS A 189 CYS A 203 1555 1555 2.09 SSBOND 5 CYS B 96 CYS B 105 1555 1555 2.04 SSBOND 6 CYS B 99 CYS B 110 1555 1555 2.04 SSBOND 7 CYS B 127 CYS B 211 1555 1555 2.09 SSBOND 8 CYS B 189 CYS B 203 1555 1555 2.12 SSBOND 9 CYS C 36 CYS C 41 1555 1555 2.07 SSBOND 10 CYS C 96 CYS C 164 1555 1555 2.15 SSBOND 11 CYS C 202 CYS C 259 1555 1555 2.09 CISPEP 1 GLY A 97 PRO A 98 0 -7.89 CISPEP 2 SER A 194 SER A 195 0 -4.50 CISPEP 3 GLY B 97 PRO B 98 0 -3.16 CISPEP 4 SER B 194 SER B 195 0 -2.36 CISPEP 5 TYR C 208 PRO C 209 0 -7.28 CRYST1 121.481 121.481 102.063 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008232 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009798 0.00000