HEADER SPLICING 26-AUG-22 7FOC TITLE PANDDA ANALYSIS GROUP DEPOSITION -- AAR2/RNASEH IN COMPLEX WITH TITLE 2 FRAGMENT P08A01 FROM THE F2X-UNIVERSAL LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1836-2090; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: ATCC 204508 / S288C; SOURCE 5 GENE: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_TAXID: 559292; SOURCE 11 STRAIN: ATCC 204508 / S288C; SOURCE 12 GENE: AAR2, YBL074C, YBL06.06, YBL0611; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMAX, FRAGMAXAPP, FRAGMENT SCREENING, RNASEH LIKE DOMAIN, U5 SNRNP KEYWDS 2 ASSEMBLY, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS REVDAT 3 22-MAY-24 7FOC 1 REMARK REVDAT 2 30-NOV-22 7FOC 1 JRNL REVDAT 1 02-NOV-22 7FOC 0 JRNL AUTH T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS JRNL TITL LARGE-SCALE CRYSTALLOGRAPHIC FRAGMENT SCREENING EXPEDITES JRNL TITL 2 COMPOUND OPTIMIZATION AND IDENTIFIES PUTATIVE JRNL TITL 3 PROTEIN-PROTEIN INTERACTION SITES. JRNL REF J.MED.CHEM. V. 65 14630 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36260741 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01165 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 49837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4800 - 1.9000 0.98 0 2100 0.2017 0.2483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1833:1904) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1046 7.1299 25.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.2286 T22: 0.2165 REMARK 3 T33: 0.2771 T12: -0.0171 REMARK 3 T13: 0.0085 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.5625 L22: 0.0684 REMARK 3 L33: 0.1211 L12: -0.0697 REMARK 3 L13: -0.1462 L23: -0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.041 S12: -0.0167 S13: -0.0462 REMARK 3 S21: -0.0167 S22: -0.0349 S23: -0.1485 REMARK 3 S31: -0.0462 S32: -0.1485 S33: -0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 1905:1964) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3371 11.0122 20.1728 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2904 REMARK 3 T33: 0.224 T12: -0.0185 REMARK 3 T13: 0.0006 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.3785 L22: 1.0944 REMARK 3 L33: 0.5305 L12: -0.0467 REMARK 3 L13: 0.2965 L23: 0.384 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: -0.0453 S13: -0.0082 REMARK 3 S21: -0.0453 S22: -0.0186 S23: -0.222 REMARK 3 S31: -0.0082 S32: -0.222 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1965:2027) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3136 15.6528 35.5987 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.208 REMARK 3 T33: 0.2218 T12: -0.029 REMARK 3 T13: 0.0014 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.6646 L22: 0.5552 REMARK 3 L33: 1.1756 L12: -0.0028 REMARK 3 L13: -0.1099 L23: 0.8095 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.1439 S13: 0.0274 REMARK 3 S21: 0.1439 S22: 0.0578 S23: -0.0211 REMARK 3 S31: 0.0274 S32: -0.0211 S33: -0 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 2028:2069) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9575 23.9737 36.9379 REMARK 3 T TENSOR REMARK 3 T11: 0.2768 T22: 0.2633 REMARK 3 T33: 0.3278 T12: -0.047 REMARK 3 T13: 0.0224 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.9311 L22: 0.1832 REMARK 3 L33: 0.2248 L12: -0.4048 REMARK 3 L13: 0.3599 L23: -0.1859 REMARK 3 S TENSOR REMARK 3 S11: 0.1002 S12: 0.0725 S13: -0.2192 REMARK 3 S21: 0.0725 S22: -0.0199 S23: 0.2006 REMARK 3 S31: -0.2192 S32: 0.2006 S33: 0 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:66) REMARK 3 ORIGIN FOR THE GROUP (A): 12.375 12.992 -30.1992 REMARK 3 T TENSOR REMARK 3 T11: 0.3176 T22: 0.274 REMARK 3 T33: 0.2474 T12: 0.0433 REMARK 3 T13: -0.0018 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.9153 L22: 0.7521 REMARK 3 L33: 1.0935 L12: -0.6996 REMARK 3 L13: 0.3768 L23: -0.7435 REMARK 3 S TENSOR REMARK 3 S11: 0.2085 S12: -0.3746 S13: 0.2487 REMARK 3 S21: -0.3746 S22: -0.018 S23: -0.0487 REMARK 3 S31: 0.2487 S32: -0.0487 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 67:137) REMARK 3 ORIGIN FOR THE GROUP (A): 6.756 8.5849 -28.8445 REMARK 3 T TENSOR REMARK 3 T11: 0.2922 T22: 0.2846 REMARK 3 T33: 0.2448 T12: 0.0262 REMARK 3 T13: -0.0439 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.7415 L22: 0.3122 REMARK 3 L33: 1.2739 L12: 0.2171 REMARK 3 L13: 0.4832 L23: -0.3356 REMARK 3 S TENSOR REMARK 3 S11: 0.1253 S12: -0.1963 S13: 0.1757 REMARK 3 S21: -0.1963 S22: 0.1258 S23: -0.3005 REMARK 3 S31: 0.1757 S32: -0.3005 S33: 0.0172 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 138:251) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2987 4.1709 -3.5164 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.2748 REMARK 3 T33: 0.263 T12: -0.0234 REMARK 3 T13: -0.0254 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.3642 L22: 0.4948 REMARK 3 L33: 1.1543 L12: -0.3847 REMARK 3 L13: 0.5296 L23: -0.4935 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: 0.0294 S13: -0.0307 REMARK 3 S21: 0.0294 S22: -0.0489 S23: -0.2125 REMARK 3 S31: -0.0307 S32: -0.2125 S33: -0 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 252:317) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5484 -1.0299 -11.5783 REMARK 3 T TENSOR REMARK 3 T11: 0.3354 T22: 0.3734 REMARK 3 T33: 0.3533 T12: 0.0544 REMARK 3 T13: 0.0268 T23: 0.042 REMARK 3 L TENSOR REMARK 3 L11: 0.4288 L22: 0.0992 REMARK 3 L33: 0.9581 L12: 0.1949 REMARK 3 L13: 0.4722 L23: 0.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -0.0511 S13: 0.3819 REMARK 3 S21: -0.0511 S22: -0.08 S23: 0.5394 REMARK 3 S31: 0.3819 S32: 0.5394 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1001405141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49842 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 40.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.72 REMARK 200 R MERGE FOR SHELL (I) : 0.03600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 50.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG4000, 3% DMSO, 0.1 M TRIS, PH REMARK 280 8.5, 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.67200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.99400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.67200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.99400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2070 REMARK 465 ILE A 2071 REMARK 465 SER A 2072 REMARK 465 ALA A 2073 REMARK 465 LEU A 2074 REMARK 465 THR A 2075 REMARK 465 GLN A 2076 REMARK 465 THR A 2077 REMARK 465 GLU A 2078 REMARK 465 ILE A 2079 REMARK 465 LYS A 2080 REMARK 465 ASP A 2081 REMARK 465 ILE A 2082 REMARK 465 ILE A 2083 REMARK 465 LEU A 2084 REMARK 465 GLY A 2085 REMARK 465 GLN A 2086 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 SER B 170 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR B 203 N CA C O CB CG CD1 REMARK 480 TYR B 203 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN B 19 O HOH B 501 1.49 REMARK 500 O SER A 1838 O HOH A 2101 1.87 REMARK 500 O HOH A 2140 O HOH A 2181 2.00 REMARK 500 NH1 ARG A 1957 O HOH A 2102 2.04 REMARK 500 O HOH A 2140 O HOH B 542 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET A 2024 HE1 PHE B 96 1656 0.55 REMARK 500 OE1 GLU A 2020 HD2 ARG B 99 1656 1.09 REMARK 500 SD MET A 2024 HE1 PHE B 96 1656 1.19 REMARK 500 HG3 GLU A 2020 HD3 ARG B 99 1656 1.25 REMARK 500 SD MET A 2024 CE1 PHE B 96 1656 1.29 REMARK 500 CE MET A 2024 HE1 PHE B 96 1656 1.43 REMARK 500 SD MET A 2024 CE1 PHE B 96 1656 1.59 REMARK 500 SD MET A 2024 CD1 PHE B 96 1656 1.88 REMARK 500 OE1 GLU A 2020 CD ARG B 99 1656 1.99 REMARK 500 CE MET A 2024 CE1 PHE B 96 1656 2.06 REMARK 500 OE2 GLU A 2020 OE2 GLU B 98 1656 2.10 REMARK 500 SD MET A 2024 CD1 PHE B 96 1656 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE B 36 C PRO B 37 N 0.116 REMARK 500 PRO B 37 N PRO B 37 CA 0.186 REMARK 500 HIS B 40 C HIS B 40 O -0.168 REMARK 500 HIS B 42 NE2 HIS B 42 CD2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 37 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 PRO B 37 CA - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 PRO B 37 N - CA - C ANGL. DEV. = -24.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1836 -128.32 -176.31 REMARK 500 ASN A1869 -176.23 -57.83 REMARK 500 PHE A1951 71.88 -114.98 REMARK 500 PRO A1964 32.14 -95.15 REMARK 500 ASP A1993 -123.09 48.99 REMARK 500 ASP B 18 -128.54 46.60 REMARK 500 PRO B 29 80.31 -68.95 REMARK 500 MET B 54 98.29 43.09 REMARK 500 MET B 54 92.67 45.97 REMARK 500 ASN B 95 -61.74 -99.66 REMARK 500 GLN B 100 6.50 111.18 REMARK 500 LYS B 132 78.88 -153.96 REMARK 500 LYS B 184 61.77 -116.30 REMARK 500 LYS B 215 -37.94 77.69 REMARK 500 LEU B 302 55.68 -115.05 REMARK 500 TYR B 313 45.67 -140.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE B 36 10.39 REMARK 500 GLY B 39 10.07 REMARK 500 HIS B 40 -11.26 REMARK 500 HIS B 40 -11.11 REMARK 500 MET B 64 10.13 REMARK 500 GLN B 122 -14.92 REMARK 500 GLN B 122 -15.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 7FOC A 1836 2090 UNP P33334 PRP8_YEAST 1836 2090 DBREF 7FOC B 1 317 UNP P32357 AAR2_YEAST 1 317 SEQADV 7FOC GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 7FOC ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 7FOC MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 7FOC GLY B -3 UNP P32357 EXPRESSION TAG SEQADV 7FOC ALA B -2 UNP P32357 EXPRESSION TAG SEQADV 7FOC MET B -1 UNP P32357 EXPRESSION TAG SEQADV 7FOC ALA B 0 UNP P32357 EXPRESSION TAG SEQADV 7FOC SER B 166 UNP P32357 LEU 153 CONFLICT SEQADV 7FOC SER B 167 UNP P32357 LYS 154 CONFLICT SEQADV 7FOC B UNP P32357 LEU 157 DELETION SEQADV 7FOC B UNP P32357 GLN 158 DELETION SEQADV 7FOC B UNP P32357 LYS 159 DELETION SEQADV 7FOC B UNP P32357 ALA 160 DELETION SEQADV 7FOC B UNP P32357 GLY 161 DELETION SEQADV 7FOC B UNP P32357 SER 162 DELETION SEQADV 7FOC B UNP P32357 LYS 163 DELETION SEQADV 7FOC B UNP P32357 MET 164 DELETION SEQADV 7FOC B UNP P32357 GLU 165 DELETION SEQADV 7FOC B UNP P32357 ALA 166 DELETION SEQADV 7FOC B UNP P32357 LYS 167 DELETION SEQADV 7FOC B UNP P32357 ASN 168 DELETION SEQADV 7FOC B UNP P32357 GLU 169 DELETION SEQADV 7FOC SER B 170 UNP P32357 ASP 170 CONFLICT SEQRES 1 A 258 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 258 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 258 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 258 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 258 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 258 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 258 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 258 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 258 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 258 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 258 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 258 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 258 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 258 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 258 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 258 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 258 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 258 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 258 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 258 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA SEQRES 1 B 308 GLY ALA MET ALA MET ASN THR VAL PRO PHE THR SER ALA SEQRES 2 B 308 PRO ILE GLU VAL THR ILE GLY ILE ASP GLN TYR SER PHE SEQRES 3 B 308 ASN VAL LYS GLU ASN GLN PRO PHE HIS GLY ILE LYS ASP SEQRES 4 B 308 ILE PRO ILE GLY HIS VAL HIS VAL ILE HIS PHE GLN HIS SEQRES 5 B 308 ALA ASP ASN SER SER MET ARG TYR GLY TYR TRP PHE ASP SEQRES 6 B 308 CYS ARG MET GLY ASN PHE TYR ILE GLN TYR ASP PRO LYS SEQRES 7 B 308 ASP GLY LEU TYR LYS MET MET GLU GLU ARG ASP GLY ALA SEQRES 8 B 308 LYS PHE GLU ASN ILE VAL HIS ASN PHE LYS GLU ARG GLN SEQRES 9 B 308 MET MET VAL SER TYR PRO LYS ILE ASP GLU ASP ASP THR SEQRES 10 B 308 TRP TYR ASN LEU THR GLU PHE VAL GLN MET ASP LYS ILE SEQRES 11 B 308 ARG LYS ILE VAL ARG LYS ASP GLU ASN GLN PHE SER TYR SEQRES 12 B 308 VAL ASP SER SER MET THR THR VAL GLN GLU ASN GLU LEU SEQRES 13 B 308 SER SER SER SER SER ASP PRO ALA HIS SER LEU ASN TYR SEQRES 14 B 308 THR VAL ILE ASN PHE LYS SER ARG GLU ALA ILE ARG PRO SEQRES 15 B 308 GLY HIS GLU MET GLU ASP PHE LEU ASP LYS SER TYR TYR SEQRES 16 B 308 LEU ASN THR VAL MET LEU GLN GLY ILE PHE LYS ASN SER SEQRES 17 B 308 SER ASN TYR PHE GLY GLU LEU GLN PHE ALA PHE LEU ASN SEQRES 18 B 308 ALA MET PHE PHE GLY ASN TYR GLY SER SER LEU GLN TRP SEQRES 19 B 308 HIS ALA MET ILE GLU LEU ILE CYS SER SER ALA THR VAL SEQRES 20 B 308 PRO LYS HIS MET LEU ASP LYS LEU ASP GLU ILE LEU TYR SEQRES 21 B 308 TYR GLN ILE LYS THR LEU PRO GLU GLN TYR SER ASP ILE SEQRES 22 B 308 LEU LEU ASN GLU ARG VAL TRP ASN ILE CYS LEU TYR SER SEQRES 23 B 308 SER PHE GLN LYS ASN SER LEU HIS ASN THR GLU LYS ILE SEQRES 24 B 308 MET GLU ASN LYS TYR PRO GLU LEU LEU HET W55 B 401 13 HETNAM W55 2H-1-BENZOPYRAN-3-CARBOXYLIC ACID FORMUL 3 W55 C10 H8 O3 FORMUL 4 HOH *132(H2 O) HELIX 1 AA1 TYR A 1840 ASN A 1845 5 6 HELIX 2 AA2 HIS A 1895 ALA A 1900 5 6 HELIX 3 AA3 ARG A 1904 LEU A 1924 1 21 HELIX 4 AA4 PRO A 1925 GLN A 1929 5 5 HELIX 5 AA5 ARG A 1937 ALA A 1939 5 3 HELIX 6 AA6 MET A 1940 MET A 1948 1 9 HELIX 7 AA7 PRO A 1964 SER A 1970 5 7 HELIX 8 AA8 ILE A 1971 ALA A 1981 1 11 HELIX 9 AA9 ASP A 1994 ARG A 1998 5 5 HELIX 10 AB1 SER A 2000 ASN A 2018 1 19 HELIX 11 AB2 ASN A 2018 SER A 2028 1 11 HELIX 12 AB3 THR A 2044 ASN A 2068 1 25 HELIX 13 AB4 ASP B 61 GLY B 65 5 5 HELIX 14 AB5 ASP B 85 GLN B 100 1 16 HELIX 15 AB6 ASP B 112 GLU B 119 1 8 HELIX 16 AB7 GLN B 122 VAL B 130 1 9 HELIX 17 AB8 THR B 146 GLU B 151 1 6 HELIX 18 AB9 ASP B 171 SER B 175 5 5 HELIX 19 AC1 HIS B 193 ASP B 200 1 8 HELIX 20 AC2 LYS B 201 THR B 207 1 7 HELIX 21 AC3 ASN B 216 GLY B 235 1 20 HELIX 22 AC4 ASN B 236 SER B 252 1 17 HELIX 23 AC5 PRO B 257 LEU B 275 1 19 HELIX 24 AC6 PRO B 276 GLN B 278 5 3 HELIX 25 AC7 TYR B 279 LEU B 284 1 6 HELIX 26 AC8 ASN B 285 SER B 295 1 11 HELIX 27 AC9 GLN B 298 SER B 301 5 4 HELIX 28 AD1 LEU B 302 TYR B 313 1 12 HELIX 29 AD2 PRO B 314 LEU B 317 5 4 SHEET 1 AA1 6 ALA A1955 PRO A1958 0 SHEET 2 AA1 6 GLN A1932 VAL A1935 1 N ILE A1933 O ALA A1955 SHEET 3 AA1 6 LYS A1849 ASP A1853 1 N LEU A1850 O ILE A1934 SHEET 4 AA1 6 GLY A1877 LEU A1882 -1 O LEU A1882 N PHE A1851 SHEET 5 AA1 6 HIS A1888 ILE A1894 -1 O PHE A1890 N THR A1881 SHEET 6 AA1 6 GLN A1985 ASN A1990 -1 O PHE A1989 N LEU A1889 SHEET 1 AA2 2 ARG A1859 LYS A1864 0 SHEET 2 AA2 2 VAL A1870 ILE A1875 -1 O ALA A1871 N HIS A1863 SHEET 1 AA3 3 ASN B 2 PRO B 5 0 SHEET 2 AA3 3 GLY B 32 ILE B 36 -1 O ILE B 33 N VAL B 4 SHEET 3 AA3 3 VAL B 103 SER B 104 1 O VAL B 103 N LYS B 34 SHEET 1 AA4 5 TYR B 20 VAL B 24 0 SHEET 2 AA4 5 VAL B 13 ILE B 17 -1 N ILE B 15 O PHE B 22 SHEET 3 AA4 5 HIS B 42 HIS B 48 -1 O HIS B 45 N GLY B 16 SHEET 4 AA4 5 TYR B 56 PHE B 60 -1 O TYR B 58 N ILE B 44 SHEET 5 AA4 5 SER B 138 ASP B 141 -1 O SER B 138 N TRP B 59 SHEET 1 AA5 2 PHE B 67 ASP B 72 0 SHEET 2 AA5 2 LEU B 77 GLU B 82 -1 O MET B 81 N TYR B 68 CRYST1 87.344 85.988 93.415 90.00 110.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011449 0.000000 0.004383 0.00000 SCALE2 0.000000 0.011630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011463 0.00000