HEADER TRANSFERASE 08-FEB-23 7FTO TITLE CRYSTAL STRUCTURE OF HUMAN CYCLIC GMP-AMP SYNTHASE IN COMPLEX WITH 6- TITLE 2 (2-CHLORO-5-FLUORO-4-METHYLPHENYL)-1H-BENZIMIDAZOLE-4-CARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 161-522; COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CGAS, C6ORF150, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A_CGAS(161-522_WT) KEYWDS IMMUNE RESPONSE, TRANSFERASE, NTASE, DNA SENSOR EXPDTA X-RAY DIFFRACTION AUTHOR L.LEIBROCK,J.BENZ,K.GROEBKE-ZBINDEN,C.ZHOU,M.G.RUDOLPH REVDAT 1 21-FEB-24 7FTO 0 JRNL AUTH K.GROEBKE-ZBINDEN,A.VANDEMEULEBROUCKE,M.HILBERT,M.G.RUDOLPH JRNL TITL CRYSTAL STRUCTURE OF A HUMAN CYCLIC GMP-AMP SYNTHASE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 16098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 846 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 42 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 21.48 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 384 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4877 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 364 REMARK 3 BIN R VALUE (WORKING SET) : 0.4877 REMARK 3 BIN FREE R VALUE : 0.4871 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.21 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 20 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32200 REMARK 3 B22 (A**2) : -0.05770 REMARK 3 B33 (A**2) : -1.26430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.457 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.284 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.454 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.287 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2956 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3966 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1091 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 487 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2956 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 370 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3251 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.52 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.72 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|162 - A|198 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.9452 11.3627 25.2719 REMARK 3 T TENSOR REMARK 3 T11: -0.2582 T22: 0.0461 REMARK 3 T33: -0.1220 T12: -0.1755 REMARK 3 T13: 0.0339 T23: 0.0949 REMARK 3 L TENSOR REMARK 3 L11: 7.7717 L22: 0.0128 REMARK 3 L33: 2.6288 L12: -2.2628 REMARK 3 L13: -0.8045 L23: -2.1045 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: -1.6327 S13: -1.1374 REMARK 3 S21: 0.4861 S22: -0.0847 S23: -0.5428 REMARK 3 S31: -0.4169 S32: 0.8814 S33: 0.1343 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|199 - A|224 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.3125 2.5944 22.4315 REMARK 3 T TENSOR REMARK 3 T11: -0.4929 T22: -0.2032 REMARK 3 T33: 0.3887 T12: -0.1158 REMARK 3 T13: 0.1717 T23: 0.2569 REMARK 3 L TENSOR REMARK 3 L11: 13.3039 L22: 1.1463 REMARK 3 L33: 9.8681 L12: -4.0761 REMARK 3 L13: 4.1002 L23: -0.0321 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.1208 S13: -0.5441 REMARK 3 S21: -0.0477 S22: -0.0556 S23: -0.1944 REMARK 3 S31: -0.0739 S32: 0.7355 S33: 0.0645 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|225 - A|298 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.2400 -4.7943 24.2070 REMARK 3 T TENSOR REMARK 3 T11: -0.3931 T22: -0.3032 REMARK 3 T33: 0.2556 T12: -0.1874 REMARK 3 T13: 0.1786 T23: 0.3245 REMARK 3 L TENSOR REMARK 3 L11: 7.6581 L22: 5.2580 REMARK 3 L33: 5.0571 L12: -1.8888 REMARK 3 L13: -1.0368 L23: -1.9342 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.7236 S13: -1.6327 REMARK 3 S21: 0.1097 S22: -0.2269 S23: 0.3178 REMARK 3 S31: 0.9003 S32: -0.2936 S33: 0.2394 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|299 - A|326 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.2925 2.1702 31.6206 REMARK 3 T TENSOR REMARK 3 T11: -0.1620 T22: 0.1939 REMARK 3 T33: 0.0228 T12: -0.0388 REMARK 3 T13: 0.1377 T23: 0.3482 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 4.3982 REMARK 3 L33: 11.9231 L12: -0.1002 REMARK 3 L13: -1.9664 L23: 1.4714 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: -1.1534 S13: -0.8784 REMARK 3 S21: 0.7235 S22: -0.2014 S23: 0.2799 REMARK 3 S31: -0.0726 S32: 0.6122 S33: 0.3051 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|327 - A|405 } REMARK 3 ORIGIN FOR THE GROUP (A): 14.8526 13.7677 11.4670 REMARK 3 T TENSOR REMARK 3 T11: -0.3253 T22: -0.2351 REMARK 3 T33: -0.2974 T12: 0.0439 REMARK 3 T13: 0.0538 T23: -0.0795 REMARK 3 L TENSOR REMARK 3 L11: 6.6736 L22: 2.7365 REMARK 3 L33: 6.9580 L12: 0.8384 REMARK 3 L13: -2.2008 L23: -2.1991 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: 0.0655 S13: -0.2608 REMARK 3 S21: -0.0543 S22: 0.1633 S23: 0.2956 REMARK 3 S31: -0.1324 S32: -0.4940 S33: -0.1804 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|406 - A|520 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.0238 26.0003 26.3503 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: -0.1425 REMARK 3 T33: -0.1993 T12: 0.0583 REMARK 3 T13: 0.2694 T23: -0.2294 REMARK 3 L TENSOR REMARK 3 L11: 6.4882 L22: 3.5813 REMARK 3 L33: 8.2309 L12: 1.0028 REMARK 3 L13: -2.0058 L23: 0.3201 REMARK 3 S TENSOR REMARK 3 S11: 0.7596 S12: -1.1493 S13: 1.0041 REMARK 3 S21: 0.9036 S22: -0.0045 S23: 0.4481 REMARK 3 S31: -1.5440 S32: -0.3187 S33: -0.7552 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LIGAND WELL DEFINED BY ELECTRON REMARK 3 DENSITY, INCLUDING THE TAUTOMER. OVERALL PROTEIN STRUCTURE NOT REMARK 3 VERY GOOD. HIGH B-VALUES REMARK 4 REMARK 4 7FTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1001405333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 82.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.392 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.84 REMARK 200 R MERGE FOR SHELL (I) : 2.69100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12 MG/ML PROTEIN IN 25 MM TRIS/HCL REMARK 280 PH7.5, 500MM NACL, 2MM TCEP, SUPPLEMENTED WITH 10X MOLAR EXCESS REMARK 280 OF LIGAND AND, IF NEEDED, WITH 10 MM MGCL2 AND 5MM ATP, THEN REMARK 280 MIXED 1:1 WITH RESERVOIR OF THE PROCOMPLEX SCREEN. SEVERAL REMARK 280 CONDITIONS RESULTED IN CRYSTALS, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.41150 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.23850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.41150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.23850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 161 REMARK 465 LYS A 254 REMARK 465 ARG A 255 REMARK 465 ASN A 256 REMARK 465 PRO A 257 REMARK 465 LYS A 258 REMARK 465 GLU A 366 REMARK 465 GLY A 367 REMARK 465 ASN A 368 REMARK 465 GLY A 369 REMARK 465 PHE A 370 REMARK 465 GLN A 371 REMARK 465 GLU A 521 REMARK 465 PHE A 522 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 372 CD GLU A 372 OE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 179 101.85 -47.50 REMARK 500 TYR A 214 28.85 -67.87 REMARK 500 GLU A 216 70.52 -171.07 REMARK 500 HIS A 217 90.77 -54.98 REMARK 500 SER A 243 38.45 37.69 REMARK 500 ARG A 246 -27.15 74.89 REMARK 500 SER A 263 -14.27 -49.79 REMARK 500 GLU A 267 62.77 -119.24 REMARK 500 ASP A 293 -74.23 -65.16 REMARK 500 SER A 313 -118.78 62.76 REMARK 500 SER A 345 157.06 101.18 REMARK 500 LYS A 362 143.74 -177.79 REMARK 500 ASN A 389 61.80 -161.12 REMARK 500 ASN A 449 75.08 -113.72 REMARK 500 ASN A 514 21.47 -150.37 REMARK 500 PHE A 516 71.43 36.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 111.5 REMARK 620 3 CYS A 397 SG 110.0 125.7 REMARK 620 4 CYS A 404 SG 96.7 97.4 111.0 REMARK 620 N 1 2 3 DBREF 7FTO A 161 522 UNP Q8N884 CGAS_HUMAN 161 522 SEQRES 1 A 362 GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU LYS SEQRES 2 A 362 LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET VAL SEQRES 3 A 362 LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS CYS SEQRES 4 A 362 ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR GLY SEQRES 5 A 362 SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN GLU SEQRES 6 A 362 PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE GLN SEQRES 7 A 362 LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE VAL SEQRES 8 A 362 LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER GLN SEQRES 9 A 362 PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET LEU SEQRES 10 A 362 SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN ASP SEQRES 11 A 362 ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG GLY SEQRES 12 A 362 GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS ILE SEQRES 13 A 362 SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SER SEQRES 14 A 362 TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN ASN SEQRES 15 A 362 TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU LYS SEQRES 16 A 362 PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY ASN SEQRES 17 A 362 GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER HIS SEQRES 18 A 362 ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER LYS SEQRES 19 A 362 THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG LYS SEQRES 20 A 362 ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN LEU SEQRES 21 A 362 LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS PHE SEQRES 22 A 362 SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL CYS SEQRES 23 A 362 THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS ASP SEQRES 24 A 362 LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE LEU SEQRES 25 A 362 GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE ILE SEQRES 26 A 362 PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP LYS SEQRES 27 A 362 ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR GLU SEQRES 28 A 362 ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE HET ZN A 601 1 HET YM9 A 602 21 HETNAM ZN ZINC ION HETNAM YM9 (5M)-5-(2-CHLORO-5-FLUORO-4-METHYLPHENYL)-1H- HETNAM 2 YM9 BENZIMIDAZOLE-7-CARBOXYLIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 YM9 C15 H10 CL F N2 O2 FORMUL 4 HOH *23(H2 O) HELIX 1 AA1 ALA A 162 ASP A 178 1 17 HELIX 2 AA2 THR A 181 LYS A 198 1 18 HELIX 3 AA3 LEU A 262 GLN A 264 5 3 HELIX 4 AA4 SER A 272 ASN A 289 1 18 HELIX 5 AA5 PRO A 331 GLN A 335 5 5 HELIX 6 AA6 SER A 345 ARG A 353 1 9 HELIX 7 AA7 HIS A 381 ASN A 388 1 8 HELIX 8 AA8 CYS A 405 PHE A 424 1 20 HELIX 9 AA9 SER A 434 ASN A 449 1 16 HELIX 10 AB1 GLN A 451 LYS A 458 5 8 HELIX 11 AB2 ASP A 459 GLU A 478 1 20 HELIX 12 AB3 ASP A 497 ASN A 513 1 17 HELIX 13 AB4 ASN A 514 GLU A 515 5 2 HELIX 14 AB5 PHE A 516 ASP A 520 5 5 SHEET 1 AA1 7 VAL A 206 LEU A 208 0 SHEET 2 AA1 7 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 AA1 7 ILE A 316 SER A 326 1 O THR A 321 N PHE A 230 SHEET 4 AA1 7 PHE A 357 PRO A 361 -1 O LEU A 359 N LEU A 324 SHEET 5 AA1 7 TRP A 375 SER A 378 -1 O ARG A 376 N VAL A 360 SHEET 6 AA1 7 TYR A 248 LYS A 252 -1 N TYR A 249 O TRP A 375 SHEET 7 AA1 7 GLN A 238 GLU A 241 -1 N GLN A 238 O LYS A 252 SHEET 1 AA2 5 VAL A 206 LEU A 208 0 SHEET 2 AA2 5 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 AA2 5 ILE A 316 SER A 326 1 O THR A 321 N PHE A 230 SHEET 4 AA2 5 VAL A 308 ILE A 312 -1 N VAL A 308 O ILE A 320 SHEET 5 AA2 5 VAL A 296 ILE A 297 -1 N ILE A 297 O LEU A 311 SHEET 1 AA3 2 LEU A 266 GLU A 267 0 SHEET 2 AA3 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.01 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.39 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.21 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.50 CISPEP 1 SER A 305 PRO A 306 0 3.52 CRYST1 44.823 59.254 164.477 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006080 0.00000