HEADER CHAPERONE 12-JAN-24 7GY4
TITLE CRYSTAL STRUCTURE OF HSP72 IN COMPLEX WITH LIGAND 10 AT 1.14 MGY X-RAY
TITLE 2 DOSE.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN 1A;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: NUCLEOTIDE BINDING DOMAIN, UNP RESIDUES 1-380;
COMPND 5 SYNONYM: HEAT SHOCK 70 KDA PROTEIN 1,HSP70-1,HSP70.1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HSPA1A, HSP72, HSPA1, HSX70;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-AI;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1
KEYWDS CHAPERONE, HSP70, HSP72, HEAT SHOCK PROTEIN, RADIATION DAMAGE, LIGAND
EXPDTA X-RAY DIFFRACTION
AUTHOR M.CABRY,M.J.RODRIGUES,Y.V.LE BIHAN,R.L.M.VAN MONTFORT
REVDAT 2 01-JAN-25 7GY4 1 JRNL
REVDAT 1 11-DEC-24 7GY4 0
JRNL AUTH M.J.RODRIGUES,M.CABRY,G.COLLIE,M.CARTER,C.MCANDREW,R.L.OWEN,
JRNL AUTH 2 B.R.BELLENIE,Y.V.LE BIHAN,R.L.M.VAN MONTFORT
JRNL TITL SPECIFIC RADIATION DAMAGE TO HALOGENATED INHIBITORS AND
JRNL TITL 2 LIGANDS IN PROTEIN-LIGAND CRYSTAL STRUCTURES.
JRNL REF J.APPL.CRYSTALLOGR. V. 57 1951 2024
JRNL REFN ISSN 0021-8898
JRNL PMID 39628887
JRNL DOI 10.1107/S1600576724010549
REMARK 2
REMARK 2 RESOLUTION. 1.92 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.60
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 32324
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.171
REMARK 3 R VALUE (WORKING SET) : 0.169
REMARK 3 FREE R VALUE : 0.215
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860
REMARK 3 FREE R VALUE TEST SET COUNT : 1570
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 50
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.93
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 647
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1881
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 619
REMARK 3 BIN R VALUE (WORKING SET) : 0.1887
REMARK 3 BIN FREE R VALUE : 0.1738
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.33
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 28
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2984
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 35
REMARK 3 SOLVENT ATOMS : 484
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 24.02
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.88
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.37150
REMARK 3 B22 (A**2) : -3.11780
REMARK 3 B33 (A**2) : 3.48930
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.165
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.146
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.144
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.137
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3117 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4227 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1098 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 558 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3117 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 423 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 4123 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.99
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.29
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.12
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|-1 - 135}
REMARK 3 ORIGIN FOR THE GROUP (A): -23.0609 10.0409 -4.0594
REMARK 3 T TENSOR
REMARK 3 T11: -0.0210 T22: -0.0377
REMARK 3 T33: -0.0193 T12: -0.0027
REMARK 3 T13: 0.0030 T23: -0.0189
REMARK 3 L TENSOR
REMARK 3 L11: 1.0193 L22: 0.7234
REMARK 3 L33: 0.9780 L12: -0.0807
REMARK 3 L13: 0.1117 L23: 0.1604
REMARK 3 S TENSOR
REMARK 3 S11: 0.0104 S12: -0.0367 S13: 0.0105
REMARK 3 S21: -0.0047 S22: -0.0287 S23: 0.0554
REMARK 3 S31: -0.0339 S32: -0.0444 S33: 0.0183
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|136 - 229}
REMARK 3 ORIGIN FOR THE GROUP (A): -10.9115 -4.2582 -4.5935
REMARK 3 T TENSOR
REMARK 3 T11: -0.0183 T22: -0.0462
REMARK 3 T33: -0.0347 T12: 0.0021
REMARK 3 T13: 0.0230 T23: -0.0159
REMARK 3 L TENSOR
REMARK 3 L11: 1.1615 L22: 1.1071
REMARK 3 L33: 1.6300 L12: -0.4499
REMARK 3 L13: 0.3353 L23: 0.0251
REMARK 3 S TENSOR
REMARK 3 S11: -0.0247 S12: -0.0078 S13: -0.0848
REMARK 3 S21: 0.0352 S22: 0.0072 S23: 0.0514
REMARK 3 S31: 0.1744 S32: 0.0163 S33: 0.0175
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {A|230 - 292}
REMARK 3 ORIGIN FOR THE GROUP (A): -17.0304 18.3981 22.5772
REMARK 3 T TENSOR
REMARK 3 T11: 0.1926 T22: -0.0953
REMARK 3 T33: -0.1961 T12: 0.1252
REMARK 3 T13: -0.0014 T23: 0.0204
REMARK 3 L TENSOR
REMARK 3 L11: 1.3479 L22: 3.1911
REMARK 3 L33: 0.2297 L12: -1.6042
REMARK 3 L13: -0.2297 L23: 1.7703
REMARK 3 S TENSOR
REMARK 3 S11: -0.0246 S12: 0.0231 S13: 0.1229
REMARK 3 S21: -0.3454 S22: 0.0297 S23: -0.0059
REMARK 3 S31: -0.5442 S32: -0.1482 S33: -0.0051
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: {A|293 - 387}
REMARK 3 ORIGIN FOR THE GROUP (A): -4.0380 -0.6766 8.4316
REMARK 3 T TENSOR
REMARK 3 T11: -0.0574 T22: -0.0447
REMARK 3 T33: -0.0951 T12: 0.0025
REMARK 3 T13: 0.0013 T23: -0.0007
REMARK 3 L TENSOR
REMARK 3 L11: 0.5687 L22: 0.0254
REMARK 3 L33: 6.2810 L12: -0.0894
REMARK 3 L13: -0.5275 L23: -0.1736
REMARK 3 S TENSOR
REMARK 3 S11: 0.0235 S12: -0.0995 S13: -0.0058
REMARK 3 S21: 0.0621 S22: 0.0219 S23: -0.0139
REMARK 3 S31: 0.0357 S32: 0.5442 S33: -0.0454
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7GY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-24.
REMARK 100 THE DEPOSITION ID IS D_1001406783.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 14-JUL-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I24
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9192
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32381
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920
REMARK 200 RESOLUTION RANGE LOW (A) : 38.600
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 6.300
REMARK 200 R MERGE (I) : 0.09200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 6.40
REMARK 200 R MERGE FOR SHELL (I) : 0.29300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.8.2
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.46
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 18-28% PEG 3350,
REMARK 280 2 MM MGCL2, 2 MM NAH2PO4, 5 MM 8-BROMOADENOSINE, PH 7.0, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.87050
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.35050
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.65550
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.35050
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.87050
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.65550
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -4
REMARK 465 PRO A -3
REMARK 465 LEU A -2
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 MET A 1 CG SD CE
REMARK 470 LYS A 3 CE NZ
REMARK 470 LYS A 25 CE NZ
REMARK 470 ARG A 72 NH2
REMARK 470 VAL A 82 CG1
REMARK 470 LYS A 100 CE NZ
REMARK 470 LYS A 112 CD CE NZ
REMARK 470 LYS A 190 CB CG CD CE NZ
REMARK 470 LYS A 220 CD CE NZ
REMARK 470 HIS A 227 CD2 NE2
REMARK 470 LYS A 246 CE NZ
REMARK 470 ALA A 329 CB
REMARK 470 LYS A 348 CE NZ
REMARK 470 LYS A 361 NZ
REMARK 470 LYS A 382 NZ
REMARK 470 SER A 389 CA C O CB OG
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 383 46.38 -141.72
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 981 DISTANCE = 5.84 ANGSTROMS
REMARK 525 HOH A 982 DISTANCE = 5.89 ANGSTROMS
REMARK 525 HOH A 983 DISTANCE = 6.17 ANGSTROMS
REMARK 525 HOH A 984 DISTANCE = 6.22 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 404 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 PO4 A 401 O2
REMARK 620 2 HOH A 509 O 90.4
REMARK 620 3 HOH A 516 O 88.3 100.2
REMARK 620 4 HOH A 520 O 84.4 168.0 90.5
REMARK 620 5 HOH A 656 O 177.7 90.7 89.5 94.9
REMARK 620 6 HOH A 815 O 84.8 86.2 170.6 82.5 97.3
REMARK 620 N 1 2 3 4 5
DBREF 7GY4 A 1 380 UNP P0DMV8 HS71A_HUMAN 1 380
SEQADV 7GY4 GLY A -4 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 PRO A -3 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 LEU A -2 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 GLY A -1 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 SER A 0 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 ILE A 381 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 LYS A 382 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 SER A 383 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 THR A 384 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 ARG A 385 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 ALA A 386 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 ALA A 387 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 ALA A 388 UNP P0DMV8 EXPRESSION TAG
SEQADV 7GY4 SER A 389 UNP P0DMV8 EXPRESSION TAG
SEQRES 1 A 394 GLY PRO LEU GLY SER MET ALA LYS ALA ALA ALA ILE GLY
SEQRES 2 A 394 ILE ASP LEU GLY THR THR TYR SER CYS VAL GLY VAL PHE
SEQRES 3 A 394 GLN HIS GLY LYS VAL GLU ILE ILE ALA ASN ASP GLN GLY
SEQRES 4 A 394 ASN ARG THR THR PRO SER TYR VAL ALA PHE THR ASP THR
SEQRES 5 A 394 GLU ARG LEU ILE GLY ASP ALA ALA LYS ASN GLN VAL ALA
SEQRES 6 A 394 LEU ASN PRO GLN ASN THR VAL PHE ASP ALA LYS ARG LEU
SEQRES 7 A 394 ILE GLY ARG LYS PHE GLY ASP PRO VAL VAL GLN SER ASP
SEQRES 8 A 394 MET LYS HIS TRP PRO PHE GLN VAL ILE ASN ASP GLY ASP
SEQRES 9 A 394 LYS PRO LYS VAL GLN VAL SER TYR LYS GLY GLU THR LYS
SEQRES 10 A 394 ALA PHE TYR PRO GLU GLU ILE SER SER MET VAL LEU THR
SEQRES 11 A 394 LYS MET LYS GLU ILE ALA GLU ALA TYR LEU GLY TYR PRO
SEQRES 12 A 394 VAL THR ASN ALA VAL ILE THR VAL PRO ALA TYR PHE ASN
SEQRES 13 A 394 ASP SER GLN ARG GLN ALA THR LYS ASP ALA GLY VAL ILE
SEQRES 14 A 394 ALA GLY LEU ASN VAL LEU ARG ILE ILE ASN GLU PRO THR
SEQRES 15 A 394 ALA ALA ALA ILE ALA TYR GLY LEU ASP ARG THR GLY LYS
SEQRES 16 A 394 GLY GLU ARG ASN VAL LEU ILE PHE ASP LEU GLY GLY GLY
SEQRES 17 A 394 THR PHE ASP VAL SER ILE LEU THR ILE ASP ASP GLY ILE
SEQRES 18 A 394 PHE GLU VAL LYS ALA THR ALA GLY ASP THR HIS LEU GLY
SEQRES 19 A 394 GLY GLU ASP PHE ASP ASN ARG LEU VAL ASN HIS PHE VAL
SEQRES 20 A 394 GLU GLU PHE LYS ARG LYS HIS LYS LYS ASP ILE SER GLN
SEQRES 21 A 394 ASN LYS ARG ALA VAL ARG ARG LEU ARG THR ALA CYS GLU
SEQRES 22 A 394 ARG ALA LYS ARG THR LEU SER SER SER THR GLN ALA SER
SEQRES 23 A 394 LEU GLU ILE ASP SER LEU PHE GLU GLY ILE ASP PHE TYR
SEQRES 24 A 394 THR SER ILE THR ARG ALA ARG PHE GLU GLU LEU CYS SER
SEQRES 25 A 394 ASP LEU PHE ARG SER THR LEU GLU PRO VAL GLU LYS ALA
SEQRES 26 A 394 LEU ARG ASP ALA LYS LEU ASP LYS ALA GLN ILE HIS ASP
SEQRES 27 A 394 LEU VAL LEU VAL GLY GLY SER THR ARG ILE PRO LYS VAL
SEQRES 28 A 394 GLN LYS LEU LEU GLN ASP PHE PHE ASN GLY ARG ASP LEU
SEQRES 29 A 394 ASN LYS SER ILE ASN PRO ASP GLU ALA VAL ALA TYR GLY
SEQRES 30 A 394 ALA ALA VAL GLN ALA ALA ILE LEU ILE LYS SER THR ARG
SEQRES 31 A 394 ALA ALA ALA SER
HET PO4 A 401 5
HET EDO A 402 4
HET GBA A 403 20
HET MG A 404 1
HET PO4 A 405 5
HETNAM PO4 PHOSPHATE ION
HETNAM EDO 1,2-ETHANEDIOL
HETNAM GBA 8-BROMOADENOSINE
HETNAM MG MAGNESIUM ION
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 PO4 2(O4 P 3-)
FORMUL 3 EDO C2 H6 O2
FORMUL 4 GBA C10 H12 BR N5 O4
FORMUL 5 MG MG 2+
FORMUL 7 HOH *484(H2 O)
HELIX 1 AA1 GLY A 52 GLN A 58 1 7
HELIX 2 AA2 ASN A 62 GLN A 64 5 3
HELIX 3 AA3 ASP A 69 LEU A 73 5 5
HELIX 4 AA4 ASP A 80 MET A 87 1 8
HELIX 5 AA5 LYS A 88 TRP A 90 5 3
HELIX 6 AA6 TYR A 115 GLY A 136 1 22
HELIX 7 AA7 ASN A 151 ALA A 165 1 15
HELIX 8 AA8 GLU A 175 TYR A 183 1 9
HELIX 9 AA9 GLY A 229 LYS A 250 1 22
HELIX 10 AB1 ASN A 256 LEU A 274 1 19
HELIX 11 AB2 ARG A 299 CYS A 306 1 8
HELIX 12 AB3 CYS A 306 THR A 313 1 8
HELIX 13 AB4 THR A 313 LYS A 325 1 13
HELIX 14 AB5 ASP A 327 ILE A 331 5 5
HELIX 15 AB6 GLY A 338 ARG A 342 5 5
HELIX 16 AB7 ILE A 343 PHE A 354 1 12
HELIX 17 AB8 GLU A 367 ILE A 381 1 15
SHEET 1 AA1 3 LYS A 25 ILE A 28 0
SHEET 2 AA1 3 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27
SHEET 3 AA1 3 THR A 38 PRO A 39 -1 O THR A 38 N SER A 16
SHEET 1 AA2 5 LYS A 25 ILE A 28 0
SHEET 2 AA2 5 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27
SHEET 3 AA2 5 ILE A 7 ASP A 10 -1 N ASP A 10 O CYS A 17
SHEET 4 AA2 5 ASN A 141 VAL A 146 1 O VAL A 143 N ILE A 9
SHEET 5 AA2 5 ASN A 168 ASN A 174 1 O LEU A 170 N ALA A 142
SHEET 1 AA3 3 ARG A 49 ILE A 51 0
SHEET 2 AA3 3 VAL A 42 PHE A 44 -1 N ALA A 43 O LEU A 50
SHEET 3 AA3 3 THR A 66 VAL A 67 -1 O VAL A 67 N VAL A 42
SHEET 1 AA4 3 GLN A 93 ASP A 97 0
SHEET 2 AA4 3 LYS A 100 TYR A 107 -1 O LYS A 102 N ILE A 95
SHEET 3 AA4 3 GLU A 110 PHE A 114 -1 O GLU A 110 N TYR A 107
SHEET 1 AA5 4 ILE A 216 ASP A 225 0
SHEET 2 AA5 4 PHE A 205 ASP A 213 -1 N VAL A 207 O ALA A 223
SHEET 3 AA5 4 ARG A 193 LEU A 200 -1 N ASP A 199 O ASP A 206
SHEET 4 AA5 4 ASP A 333 VAL A 337 1 O VAL A 335 N PHE A 198
SHEET 1 AA6 2 GLN A 279 PHE A 288 0
SHEET 2 AA6 2 ILE A 291 THR A 298 -1 O PHE A 293 N ILE A 284
LINK O2 PO4 A 401 MG MG A 404 1555 1555 2.22
LINK MG MG A 404 O HOH A 509 1555 1555 2.31
LINK MG MG A 404 O HOH A 516 1555 1555 2.10
LINK MG MG A 404 O HOH A 520 1555 1555 2.10
LINK MG MG A 404 O HOH A 656 1555 1555 2.25
LINK MG MG A 404 O HOH A 815 1555 1555 2.29
CRYST1 47.741 89.311 96.701 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020946 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011197 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010341 0.00000