data_7GZV # _entry.id 7GZV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7GZV pdb_00007gzv 10.2210/pdb7gzv/pdb WWPDB D_1001406846 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 7GZV _pdbx_database_status.recvd_initial_deposition_date 2024-01-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.email frank.von-delft@diamond.ac.uk _pdbx_contact_author.name_first Frank _pdbx_contact_author.name_last 'von Delft' _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0378-0017 _pdbx_contact_author.name_mi ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aschenbrenner, J.C.' 1 'Fearon, D.' 2 'Tomlinson, C.W.E.' 3 'Marples, P.G.' 4 'Fairhead, M.' 5 'Balcomb, B.H.' 6 'Chandran, A.V.' 7 'Godoy, A.S.' 8 'Koekemoer, L.' 9 'Lithgo, R.M.' 10 'Ni, X.' 11 'Thompson, W.' 12 'Wang, S.' 13 'Wild, C.' 14 'Williams, E.P.' 15 'Winokan, M.' 16 'Walsh, M.A.' 17 'von Delft, F.' 18 # _citation.id primary _citation.title 'Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Aschenbrenner, J.C.' ? 1 primary 'Fearon, D.' ? 2 primary 'Tomlinson, C.W.E.' ? 3 primary 'Marples, P.G.' ? 4 primary 'Fairhead, M.' ? 5 primary 'Balcomb, B.H.' ? 6 primary 'Chandran, A.V.' ? 7 primary 'Godoy, A.S.' ? 8 primary 'Koekemoer, L.' ? 9 primary 'Lithgo, R.M.' ? 10 primary 'Ni, X.' ? 11 primary 'Thompson, W.' ? 12 primary 'Wang, S.' ? 13 primary 'Wild, C.' ? 14 primary 'Williams, E.P.' ? 15 primary 'Winokan, M.' ? 16 primary 'Walsh, M.A.' ? 17 primary 'von Delft, F.' ? 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Papain-like protease nsp3' 18275.771 1 3.4.19.12,3.4.22.- ? ? ? 2 non-polymer syn ;4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-N-[(3R)-1-methylpyrrolidin-3-yl]-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide ; 496.625 1 ? ? ? ? 3 water nat water 18.015 224 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-structural protein 3,nsp3,PL2-PRO,Papain-like proteinase,PL-PRO' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFLE ; _entity_poly.pdbx_seq_one_letter_code_can ;GEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-N-[(3R)-1-methylpyrrolidin-3-yl]-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide ; A1AK3 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 VAL n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 SER n 1 8 GLY n 1 9 TYR n 1 10 LEU n 1 11 LYS n 1 12 LEU n 1 13 THR n 1 14 ASP n 1 15 ASN n 1 16 VAL n 1 17 TYR n 1 18 ILE n 1 19 LYS n 1 20 ASN n 1 21 ALA n 1 22 ASP n 1 23 ILE n 1 24 VAL n 1 25 GLU n 1 26 GLU n 1 27 ALA n 1 28 LYS n 1 29 LYS n 1 30 VAL n 1 31 LYS n 1 32 PRO n 1 33 THR n 1 34 VAL n 1 35 VAL n 1 36 VAL n 1 37 ASN n 1 38 ALA n 1 39 ALA n 1 40 ASN n 1 41 VAL n 1 42 TYR n 1 43 LEU n 1 44 LYS n 1 45 HIS n 1 46 GLY n 1 47 GLY n 1 48 GLY n 1 49 VAL n 1 50 ALA n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 ASN n 1 55 LYS n 1 56 ALA n 1 57 THR n 1 58 ASN n 1 59 ASN n 1 60 ALA n 1 61 MET n 1 62 GLN n 1 63 VAL n 1 64 GLU n 1 65 SER n 1 66 ASP n 1 67 ASP n 1 68 TYR n 1 69 ILE n 1 70 ALA n 1 71 THR n 1 72 ASN n 1 73 GLY n 1 74 PRO n 1 75 LEU n 1 76 LYS n 1 77 VAL n 1 78 GLY n 1 79 GLY n 1 80 SER n 1 81 CYS n 1 82 VAL n 1 83 LEU n 1 84 SER n 1 85 GLY n 1 86 HIS n 1 87 ASN n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 HIS n 1 92 CYS n 1 93 LEU n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 GLY n 1 98 PRO n 1 99 ASN n 1 100 VAL n 1 101 ASN n 1 102 LYS n 1 103 GLY n 1 104 GLU n 1 105 ASP n 1 106 ILE n 1 107 GLN n 1 108 LEU n 1 109 LEU n 1 110 LYS n 1 111 SER n 1 112 ALA n 1 113 TYR n 1 114 GLU n 1 115 ASN n 1 116 PHE n 1 117 ASN n 1 118 GLN n 1 119 HIS n 1 120 GLU n 1 121 VAL n 1 122 LEU n 1 123 LEU n 1 124 ALA n 1 125 PRO n 1 126 LEU n 1 127 LEU n 1 128 SER n 1 129 ALA n 1 130 GLY n 1 131 ILE n 1 132 PHE n 1 133 GLY n 1 134 ALA n 1 135 ASP n 1 136 PRO n 1 137 ILE n 1 138 HIS n 1 139 SER n 1 140 LEU n 1 141 ARG n 1 142 VAL n 1 143 CYS n 1 144 VAL n 1 145 ASP n 1 146 THR n 1 147 VAL n 1 148 ARG n 1 149 THR n 1 150 ASN n 1 151 VAL n 1 152 TYR n 1 153 LEU n 1 154 ALA n 1 155 VAL n 1 156 PHE n 1 157 ASP n 1 158 LYS n 1 159 ASN n 1 160 LEU n 1 161 TYR n 1 162 ASP n 1 163 LYS n 1 164 LEU n 1 165 VAL n 1 166 SER n 1 167 SER n 1 168 PHE n 1 169 LEU n 1 170 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 170 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1AK3 non-polymer . ;4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-N-[(3R)-1-methylpyrrolidin-3-yl]-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide ; ? 'C25 H32 N6 O3 S' 496.625 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 VAL 3 3 ? ? ? A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLU 170 170 170 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AK3 1 201 201 A1AK3 LIG A . C 3 HOH 1 301 193 HOH HOH A . C 3 HOH 2 302 192 HOH HOH A . C 3 HOH 3 303 90 HOH HOH A . C 3 HOH 4 304 188 HOH HOH A . C 3 HOH 5 305 10 HOH HOH A . C 3 HOH 6 306 123 HOH HOH A . C 3 HOH 7 307 162 HOH HOH A . C 3 HOH 8 308 114 HOH HOH A . C 3 HOH 9 309 200 HOH HOH A . C 3 HOH 10 310 104 HOH HOH A . C 3 HOH 11 311 54 HOH HOH A . C 3 HOH 12 312 115 HOH HOH A . C 3 HOH 13 313 196 HOH HOH A . C 3 HOH 14 314 169 HOH HOH A . C 3 HOH 15 315 110 HOH HOH A . C 3 HOH 16 316 84 HOH HOH A . C 3 HOH 17 317 8 HOH HOH A . C 3 HOH 18 318 43 HOH HOH A . C 3 HOH 19 319 129 HOH HOH A . C 3 HOH 20 320 216 HOH HOH A . C 3 HOH 21 321 119 HOH HOH A . C 3 HOH 22 322 156 HOH HOH A . C 3 HOH 23 323 122 HOH HOH A . C 3 HOH 24 324 82 HOH HOH A . C 3 HOH 25 325 45 HOH HOH A . C 3 HOH 26 326 97 HOH HOH A . C 3 HOH 27 327 52 HOH HOH A . C 3 HOH 28 328 111 HOH HOH A . C 3 HOH 29 329 5 HOH HOH A . C 3 HOH 30 330 18 HOH HOH A . C 3 HOH 31 331 32 HOH HOH A . C 3 HOH 32 332 204 HOH HOH A . C 3 HOH 33 333 42 HOH HOH A . C 3 HOH 34 334 14 HOH HOH A . C 3 HOH 35 335 67 HOH HOH A . C 3 HOH 36 336 75 HOH HOH A . C 3 HOH 37 337 77 HOH HOH A . C 3 HOH 38 338 28 HOH HOH A . C 3 HOH 39 339 3 HOH HOH A . C 3 HOH 40 340 198 HOH HOH A . C 3 HOH 41 341 117 HOH HOH A . C 3 HOH 42 342 9 HOH HOH A . C 3 HOH 43 343 56 HOH HOH A . C 3 HOH 44 344 2 HOH HOH A . C 3 HOH 45 345 46 HOH HOH A . C 3 HOH 46 346 69 HOH HOH A . C 3 HOH 47 347 71 HOH HOH A . C 3 HOH 48 348 105 HOH HOH A . C 3 HOH 49 349 51 HOH HOH A . C 3 HOH 50 350 24 HOH HOH A . C 3 HOH 51 351 128 HOH HOH A . C 3 HOH 52 352 31 HOH HOH A . C 3 HOH 53 353 60 HOH HOH A . C 3 HOH 54 354 7 HOH HOH A . C 3 HOH 55 355 155 HOH HOH A . C 3 HOH 56 356 194 HOH HOH A . C 3 HOH 57 357 210 HOH HOH A . C 3 HOH 58 358 16 HOH HOH A . C 3 HOH 59 359 109 HOH HOH A . C 3 HOH 60 360 183 HOH HOH A . C 3 HOH 61 361 170 HOH HOH A . C 3 HOH 62 362 137 HOH HOH A . C 3 HOH 63 363 34 HOH HOH A . C 3 HOH 64 364 102 HOH HOH A . C 3 HOH 65 365 108 HOH HOH A . C 3 HOH 66 366 161 HOH HOH A . C 3 HOH 67 367 124 HOH HOH A . C 3 HOH 68 368 15 HOH HOH A . C 3 HOH 69 369 81 HOH HOH A . C 3 HOH 70 370 70 HOH HOH A . C 3 HOH 71 371 33 HOH HOH A . C 3 HOH 72 372 36 HOH HOH A . C 3 HOH 73 373 35 HOH HOH A . C 3 HOH 74 374 89 HOH HOH A . C 3 HOH 75 375 78 HOH HOH A . C 3 HOH 76 376 113 HOH HOH A . C 3 HOH 77 377 39 HOH HOH A . C 3 HOH 78 378 100 HOH HOH A . C 3 HOH 79 379 20 HOH HOH A . C 3 HOH 80 380 4 HOH HOH A . C 3 HOH 81 381 215 HOH HOH A . C 3 HOH 82 382 21 HOH HOH A . C 3 HOH 83 383 80 HOH HOH A . C 3 HOH 84 384 217 HOH HOH A . C 3 HOH 85 385 47 HOH HOH A . C 3 HOH 86 386 19 HOH HOH A . C 3 HOH 87 387 85 HOH HOH A . C 3 HOH 88 388 63 HOH HOH A . C 3 HOH 89 389 12 HOH HOH A . C 3 HOH 90 390 201 HOH HOH A . C 3 HOH 91 391 17 HOH HOH A . C 3 HOH 92 392 96 HOH HOH A . C 3 HOH 93 393 79 HOH HOH A . C 3 HOH 94 394 25 HOH HOH A . C 3 HOH 95 395 172 HOH HOH A . C 3 HOH 96 396 62 HOH HOH A . C 3 HOH 97 397 131 HOH HOH A . C 3 HOH 98 398 58 HOH HOH A . C 3 HOH 99 399 163 HOH HOH A . C 3 HOH 100 400 120 HOH HOH A . C 3 HOH 101 401 171 HOH HOH A . C 3 HOH 102 402 95 HOH HOH A . C 3 HOH 103 403 6 HOH HOH A . C 3 HOH 104 404 1 HOH HOH A . C 3 HOH 105 405 121 HOH HOH A . C 3 HOH 106 406 76 HOH HOH A . C 3 HOH 107 407 48 HOH HOH A . C 3 HOH 108 408 73 HOH HOH A . C 3 HOH 109 409 154 HOH HOH A . C 3 HOH 110 410 87 HOH HOH A . C 3 HOH 111 411 94 HOH HOH A . C 3 HOH 112 412 29 HOH HOH A . C 3 HOH 113 413 72 HOH HOH A . C 3 HOH 114 414 205 HOH HOH A . C 3 HOH 115 415 30 HOH HOH A . C 3 HOH 116 416 22 HOH HOH A . C 3 HOH 117 417 49 HOH HOH A . C 3 HOH 118 418 187 HOH HOH A . C 3 HOH 119 419 191 HOH HOH A . C 3 HOH 120 420 53 HOH HOH A . C 3 HOH 121 421 86 HOH HOH A . C 3 HOH 122 422 149 HOH HOH A . C 3 HOH 123 423 23 HOH HOH A . C 3 HOH 124 424 27 HOH HOH A . C 3 HOH 125 425 93 HOH HOH A . C 3 HOH 126 426 182 HOH HOH A . C 3 HOH 127 427 197 HOH HOH A . C 3 HOH 128 428 13 HOH HOH A . C 3 HOH 129 429 11 HOH HOH A . C 3 HOH 130 430 125 HOH HOH A . C 3 HOH 131 431 66 HOH HOH A . C 3 HOH 132 432 57 HOH HOH A . C 3 HOH 133 433 68 HOH HOH A . C 3 HOH 134 434 55 HOH HOH A . C 3 HOH 135 435 40 HOH HOH A . C 3 HOH 136 436 88 HOH HOH A . C 3 HOH 137 437 44 HOH HOH A . C 3 HOH 138 438 199 HOH HOH A . C 3 HOH 139 439 212 HOH HOH A . C 3 HOH 140 440 144 HOH HOH A . C 3 HOH 141 441 65 HOH HOH A . C 3 HOH 142 442 101 HOH HOH A . C 3 HOH 143 443 116 HOH HOH A . C 3 HOH 144 444 127 HOH HOH A . C 3 HOH 145 445 41 HOH HOH A . C 3 HOH 146 446 74 HOH HOH A . C 3 HOH 147 447 159 HOH HOH A . C 3 HOH 148 448 61 HOH HOH A . C 3 HOH 149 449 83 HOH HOH A . C 3 HOH 150 450 37 HOH HOH A . C 3 HOH 151 451 106 HOH HOH A . C 3 HOH 152 452 220 HOH HOH A . C 3 HOH 153 453 158 HOH HOH A . C 3 HOH 154 454 112 HOH HOH A . C 3 HOH 155 455 118 HOH HOH A . C 3 HOH 156 456 179 HOH HOH A . C 3 HOH 157 457 150 HOH HOH A . C 3 HOH 158 458 222 HOH HOH A . C 3 HOH 159 459 50 HOH HOH A . C 3 HOH 160 460 143 HOH HOH A . C 3 HOH 161 461 152 HOH HOH A . C 3 HOH 162 462 214 HOH HOH A . C 3 HOH 163 463 184 HOH HOH A . C 3 HOH 164 464 178 HOH HOH A . C 3 HOH 165 465 26 HOH HOH A . C 3 HOH 166 466 168 HOH HOH A . C 3 HOH 167 467 151 HOH HOH A . C 3 HOH 168 468 135 HOH HOH A . C 3 HOH 169 469 209 HOH HOH A . C 3 HOH 170 470 173 HOH HOH A . C 3 HOH 171 471 59 HOH HOH A . C 3 HOH 172 472 134 HOH HOH A . C 3 HOH 173 473 153 HOH HOH A . C 3 HOH 174 474 221 HOH HOH A . C 3 HOH 175 475 165 HOH HOH A . C 3 HOH 176 476 176 HOH HOH A . C 3 HOH 177 477 98 HOH HOH A . C 3 HOH 178 478 166 HOH HOH A . C 3 HOH 179 479 147 HOH HOH A . C 3 HOH 180 480 195 HOH HOH A . C 3 HOH 181 481 126 HOH HOH A . C 3 HOH 182 482 202 HOH HOH A . C 3 HOH 183 483 132 HOH HOH A . C 3 HOH 184 484 142 HOH HOH A . C 3 HOH 185 485 140 HOH HOH A . C 3 HOH 186 486 138 HOH HOH A . C 3 HOH 187 487 167 HOH HOH A . C 3 HOH 188 488 133 HOH HOH A . C 3 HOH 189 489 148 HOH HOH A . C 3 HOH 190 490 157 HOH HOH A . C 3 HOH 191 491 99 HOH HOH A . C 3 HOH 192 492 206 HOH HOH A . C 3 HOH 193 493 103 HOH HOH A . C 3 HOH 194 494 207 HOH HOH A . C 3 HOH 195 495 141 HOH HOH A . C 3 HOH 196 496 203 HOH HOH A . C 3 HOH 197 497 223 HOH HOH A . C 3 HOH 198 498 139 HOH HOH A . C 3 HOH 199 499 218 HOH HOH A . C 3 HOH 200 500 211 HOH HOH A . C 3 HOH 201 501 130 HOH HOH A . C 3 HOH 202 502 224 HOH HOH A . C 3 HOH 203 503 160 HOH HOH A . C 3 HOH 204 504 186 HOH HOH A . C 3 HOH 205 505 107 HOH HOH A . C 3 HOH 206 506 177 HOH HOH A . C 3 HOH 207 507 145 HOH HOH A . C 3 HOH 208 508 181 HOH HOH A . C 3 HOH 209 509 64 HOH HOH A . C 3 HOH 210 510 91 HOH HOH A . C 3 HOH 211 511 185 HOH HOH A . C 3 HOH 212 512 38 HOH HOH A . C 3 HOH 213 513 190 HOH HOH A . C 3 HOH 214 514 208 HOH HOH A . C 3 HOH 215 515 219 HOH HOH A . C 3 HOH 216 516 92 HOH HOH A . C 3 HOH 217 517 180 HOH HOH A . C 3 HOH 218 518 146 HOH HOH A . C 3 HOH 219 519 189 HOH HOH A . C 3 HOH 220 520 136 HOH HOH A . C 3 HOH 221 521 164 HOH HOH A . C 3 HOH 222 522 174 HOH HOH A . C 3 HOH 223 523 213 HOH HOH A . C 3 HOH 224 524 175 HOH HOH A . # loop_ _software.pdbx_ordinal _software.classification _software.name _software.version _software.date _software.citation_id _software.type _software.location _software.language 1 refinement BUSTER 2.10.4 2023-06-14 ? ? ? ? 2 'data scaling' Aimless . ? ? ? ? ? 3 phasing PHASER . ? ? ? ? ? 4 'data reduction' XDS . ? ? ? ? ? # _cell.entry_id 7GZV _cell.length_a 38.352 _cell.length_b 33.147 _cell.length_c 64.347 _cell.angle_alpha 90 _cell.angle_beta 101.33 _cell.angle_gamma 90 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GZV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.entry_id 7GZV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.95 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1 M MES (pH 6.50) and 30 % w/v PEG 4000' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS EIGER2 XE 9M' _diffrn_detector.pdbx_collection_date 2023-07-07 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9212 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.9212 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7GZV _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.d_resolution_low 35.50 _reflns.d_resolution_high 1.18 _reflns.number_obs 42039 _reflns.percent_possible_obs 80.0 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_netI_over_sigmaI 8.0 _reflns.pdbx_redundancy 5.3 _reflns.pdbx_Rrim_I_all 0.090 _reflns.pdbx_Rpim_I_all 0.036 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_number_measured_all 221906 _reflns.pdbx_chi_squared 0.31 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_CC_star ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.18 _reflns_shell.d_res_low 1.20 _reflns_shell.number_measured_all 558 _reflns_shell.number_unique_obs 472 _reflns_shell.Rmerge_I_obs 2.281 _reflns_shell.pdbx_chi_squared 0.02 _reflns_shell.pdbx_redundancy 1.2 _reflns_shell.percent_possible_obs 17.4 _reflns_shell.pdbx_netI_over_sigmaI_obs 0.1 _reflns_shell.pdbx_Rrim_I_all 3.183 _reflns_shell.pdbx_Rpim_I_all 2.216 _reflns_shell.pdbx_CC_half 0.323 _reflns_shell.percent_possible_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_CC_star ? # _refine.entry_id 7GZV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.18 _refine.ls_d_res_low 22.85 _refine.ls_percent_reflns_obs 71.3 _refine.ls_number_reflns_obs 37517 _refine.ls_number_reflns_R_free 1914 _refine.ls_R_factor_obs 0.2046 _refine.ls_R_factor_R_work 0.2033 _refine.ls_R_factor_R_free 0.2289 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.B_iso_mean 21.92 _refine.aniso_B[1][1] 5.7516 _refine.aniso_B[2][2] 3.4087 _refine.aniso_B[3][3] -9.1604 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 3.0011 _refine.aniso_B[2][3] 0 _refine.pdbx_overall_SU_R_Blow_DPI 0.063 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.064 _refine.overall_SU_R_Cruickshank_DPI 0.059 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.061 _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.pdbx_diffrn_id 1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? # _refine_analyze.entry_id 7GZV _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1266 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 224 _refine_hist.number_atoms_total 1525 _refine_hist.d_res_high 1.18 _refine_hist.d_res_low 22.85 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target 'X-RAY DIFFRACTION' t_bond_d 1327 2 HARMONIC 0.014 ? 'X-RAY DIFFRACTION' t_angle_deg 1808 2 HARMONIC 1.17 ? 'X-RAY DIFFRACTION' t_dihedral_angle_d 454 2 SINUSOIDAL ? ? 'X-RAY DIFFRACTION' t_gen_planes 246 5 HARMONIC ? ? 'X-RAY DIFFRACTION' t_it 1327 10 HARMONIC ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 168 5 SEMIHARMONIC ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1276 4 SEMIHARMONIC ? ? 'X-RAY DIFFRACTION' t_omega_torsion ? ? ? 4.4 ? 'X-RAY DIFFRACTION' t_other_torsion ? ? ? 15.4 ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.18 _refine_ls_shell.d_res_low 1.28 _refine_ls_shell.percent_reflns_obs 6.6 _refine_ls_shell.number_reflns_obs 751 _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.R_factor_obs 0.3831 _refine_ls_shell.R_factor_R_work 0.3843 _refine_ls_shell.R_factor_R_free 0.3584 _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 7GZV _struct.title 'Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012336-001' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7GZV _struct_keywords.pdbx_keywords 'VIRAL PROTEIN, Hydrolase' _struct_keywords.text 'ASAP, AViDD, Diamond I04-1, crystallographic fragment screening, PanDDA, XChemExplorer, SARS-CoV-2, VIRAL PROTEIN, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSC VLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLY DKLVSSFLE ; _struct_ref.pdbx_align_begin 1024 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7GZV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0DTD1 _struct_ref_seq.db_align_beg 1024 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1192 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 170 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 7GZV _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P0DTD1 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 22 ? LYS A 31 ? ASP A 22 LYS A 31 1 ? 10 HELX_P HELX_P2 AA2 GLY A 47 ? THR A 57 ? GLY A 47 THR A 57 1 ? 11 HELX_P HELX_P3 AA3 ASN A 59 ? GLY A 73 ? ASN A 59 GLY A 73 1 ? 15 HELX_P HELX_P4 AA4 ASN A 99 ? GLY A 103 ? ASN A 99 GLY A 103 5 ? 5 HELX_P HELX_P5 AA5 GLN A 107 ? ASN A 115 ? GLN A 107 ASN A 115 1 ? 9 HELX_P HELX_P6 AA6 PHE A 116 ? HIS A 119 ? PHE A 116 HIS A 119 5 ? 4 HELX_P HELX_P7 AA7 ALA A 129 ? GLY A 133 ? ALA A 129 GLY A 133 5 ? 5 HELX_P HELX_P8 AA8 ASP A 135 ? VAL A 147 ? ASP A 135 VAL A 147 1 ? 13 HELX_P HELX_P9 AA9 ASP A 157 ? LEU A 169 ? ASP A 157 LEU A 169 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 10 ? THR A 13 ? LEU A 10 THR A 13 AA1 2 VAL A 16 ? ASN A 20 ? VAL A 16 ASN A 20 AA1 3 ASN A 150 ? VAL A 155 ? ASN A 150 VAL A 155 AA1 4 VAL A 121 ? ALA A 124 ? VAL A 121 ALA A 124 AA2 1 VAL A 34 ? ALA A 38 ? VAL A 34 ALA A 38 AA2 2 HIS A 91 ? VAL A 95 ? HIS A 91 VAL A 95 AA2 3 SER A 80 ? SER A 84 ? SER A 80 SER A 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 10 ? N LEU A 10 O ILE A 18 ? O ILE A 18 AA1 2 3 N TYR A 17 ? N TYR A 17 O LEU A 153 ? O LEU A 153 AA1 3 4 O TYR A 152 ? O TYR A 152 N ALA A 124 ? N ALA A 124 AA2 1 2 N ASN A 37 ? N ASN A 37 O VAL A 95 ? O VAL A 95 AA2 2 3 O CYS A 92 ? O CYS A 92 N LEU A 83 ? N LEU A 83 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 494 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 495 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 86 ? ? 57.76 -132.96 2 1 ASP A 157 ? ? -172.27 110.78 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id A1AK3 _pdbx_struct_mod_residue.label_seq_id ? _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A1AK3 _pdbx_struct_mod_residue.auth_seq_id 201 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LIG _pdbx_struct_mod_residue.details 1 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.T[1][1] 0.0529 _pdbx_refine_tls.T[2][2] -0.0135 _pdbx_refine_tls.T[3][3] -0.0877 _pdbx_refine_tls.T[1][2] -0.0003 _pdbx_refine_tls.T[1][3] -0.0104 _pdbx_refine_tls.T[2][3] 0.0022 _pdbx_refine_tls.L[1][1] 0.8099 _pdbx_refine_tls.L[2][2] 0.5889 _pdbx_refine_tls.L[3][3] 0.3943 _pdbx_refine_tls.L[1][2] -0.0768 _pdbx_refine_tls.L[1][3] 0.1549 _pdbx_refine_tls.L[2][3] 0.0053 _pdbx_refine_tls.S[1][1] 0.0394 _pdbx_refine_tls.S[1][2] -0.0423 _pdbx_refine_tls.S[1][3] -0.0088 _pdbx_refine_tls.S[2][1] -0.0423 _pdbx_refine_tls.S[2][2] -0.0303 _pdbx_refine_tls.S[2][3] 0.0276 _pdbx_refine_tls.S[3][1] -0.0088 _pdbx_refine_tls.S[3][2] 0.0276 _pdbx_refine_tls.S[3][3] -0.009 _pdbx_refine_tls.origin_x 3.8685 _pdbx_refine_tls.origin_y -6.9951 _pdbx_refine_tls.origin_z 15.9139 _pdbx_refine_tls.details ? _pdbx_refine_tls.method ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id 1 1 'X-RAY DIFFRACTION' . A 4 . A 170 . '{ A|* }' ? ? ? ? 2 1 'X-RAY DIFFRACTION' . A 201 . A 201 . '{ A|* }' ? ? ? ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 524 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance . _pdbx_distant_solvent_atoms.neighbor_ligand_distance 6.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A VAL 3 ? A VAL 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1AK3 N1 N Y N 1 A1AK3 N3 N N N 2 A1AK3 C4 C Y N 3 A1AK3 C5 C Y N 4 A1AK3 C6 C Y N 5 A1AK3 C7 C N N 6 A1AK3 C8 C N N 7 A1AK3 C10 C Y N 8 A1AK3 C13 C Y N 9 A1AK3 C15 C Y N 10 A1AK3 C17 C Y N 11 A1AK3 C20 C N S 12 A1AK3 C21 C N N 13 A1AK3 C22 C N N 14 A1AK3 C24 C N N 15 A1AK3 O2 O N N 16 A1AK3 C19 C N N 17 A1AK3 C23 C N N 18 A1AK3 N4 N N N 19 A1AK3 C18 C Y N 20 A1AK3 N5 N Y N 21 A1AK3 N2 N Y N 22 A1AK3 C14 C Y N 23 A1AK3 C16 C Y N 24 A1AK3 N N N N 25 A1AK3 C3 C N S 26 A1AK3 C1 C N N 27 A1AK3 C2 C N N 28 A1AK3 C C N N 29 A1AK3 C12 C Y N 30 A1AK3 C11 C Y N 31 A1AK3 S S N N 32 A1AK3 O O N N 33 A1AK3 O1 O N N 34 A1AK3 C9 C N N 35 A1AK3 H22 H N N 36 A1AK3 H10 H N N 37 A1AK3 H12 H N N 38 A1AK3 H11 H N N 39 A1AK3 H13 H N N 40 A1AK3 H14 H N N 41 A1AK3 H21 H N N 42 A1AK3 H1 H N N 43 A1AK3 H24 H N N 44 A1AK3 H23 H N N 45 A1AK3 H25 H N N 46 A1AK3 H26 H N N 47 A1AK3 H27 H N N 48 A1AK3 H31 H N N 49 A1AK3 H30 H N N 50 A1AK3 H29 H N N 51 A1AK3 H28 H N N 52 A1AK3 H2 H N N 53 A1AK3 H20 H N N 54 A1AK3 H19 H N N 55 A1AK3 H H N N 56 A1AK3 H6 H N N 57 A1AK3 H7 H N N 58 A1AK3 H9 H N N 59 A1AK3 H8 H N N 60 A1AK3 H3 H N N 61 A1AK3 H4 H N N 62 A1AK3 H5 H N N 63 A1AK3 H18 H N N 64 A1AK3 H17 H N N 65 A1AK3 H15 H N N 66 A1AK3 H16 H N N 67 ALA N N N N 68 ALA CA C N S 69 ALA C C N N 70 ALA O O N N 71 ALA CB C N N 72 ALA OXT O N N 73 ALA H H N N 74 ALA H2 H N N 75 ALA HA H N N 76 ALA HB1 H N N 77 ALA HB2 H N N 78 ALA HB3 H N N 79 ALA HXT H N N 80 ARG N N N N 81 ARG CA C N S 82 ARG C C N N 83 ARG O O N N 84 ARG CB C N N 85 ARG CG C N N 86 ARG CD C N N 87 ARG NE N N N 88 ARG CZ C N N 89 ARG NH1 N N N 90 ARG NH2 N N N 91 ARG OXT O N N 92 ARG H H N N 93 ARG H2 H N N 94 ARG HA H N N 95 ARG HB2 H N N 96 ARG HB3 H N N 97 ARG HG2 H N N 98 ARG HG3 H N N 99 ARG HD2 H N N 100 ARG HD3 H N N 101 ARG HE H N N 102 ARG HH11 H N N 103 ARG HH12 H N N 104 ARG HH21 H N N 105 ARG HH22 H N N 106 ARG HXT H N N 107 ASN N N N N 108 ASN CA C N S 109 ASN C C N N 110 ASN O O N N 111 ASN CB C N N 112 ASN CG C N N 113 ASN OD1 O N N 114 ASN ND2 N N N 115 ASN OXT O N N 116 ASN H H N N 117 ASN H2 H N N 118 ASN HA H N N 119 ASN HB2 H N N 120 ASN HB3 H N N 121 ASN HD21 H N N 122 ASN HD22 H N N 123 ASN HXT H N N 124 ASP N N N N 125 ASP CA C N S 126 ASP C C N N 127 ASP O O N N 128 ASP CB C N N 129 ASP CG C N N 130 ASP OD1 O N N 131 ASP OD2 O N N 132 ASP OXT O N N 133 ASP H H N N 134 ASP H2 H N N 135 ASP HA H N N 136 ASP HB2 H N N 137 ASP HB3 H N N 138 ASP HD2 H N N 139 ASP HXT H N N 140 CYS N N N N 141 CYS CA C N R 142 CYS C C N N 143 CYS O O N N 144 CYS CB C N N 145 CYS SG S N N 146 CYS OXT O N N 147 CYS H H N N 148 CYS H2 H N N 149 CYS HA H N N 150 CYS HB2 H N N 151 CYS HB3 H N N 152 CYS HG H N N 153 CYS HXT H N N 154 GLN N N N N 155 GLN CA C N S 156 GLN C C N N 157 GLN O O N N 158 GLN CB C N N 159 GLN CG C N N 160 GLN CD C N N 161 GLN OE1 O N N 162 GLN NE2 N N N 163 GLN OXT O N N 164 GLN H H N N 165 GLN H2 H N N 166 GLN HA H N N 167 GLN HB2 H N N 168 GLN HB3 H N N 169 GLN HG2 H N N 170 GLN HG3 H N N 171 GLN HE21 H N N 172 GLN HE22 H N N 173 GLN HXT H N N 174 GLU N N N N 175 GLU CA C N S 176 GLU C C N N 177 GLU O O N N 178 GLU CB C N N 179 GLU CG C N N 180 GLU CD C N N 181 GLU OE1 O N N 182 GLU OE2 O N N 183 GLU OXT O N N 184 GLU H H N N 185 GLU H2 H N N 186 GLU HA H N N 187 GLU HB2 H N N 188 GLU HB3 H N N 189 GLU HG2 H N N 190 GLU HG3 H N N 191 GLU HE2 H N N 192 GLU HXT H N N 193 GLY N N N N 194 GLY CA C N N 195 GLY C C N N 196 GLY O O N N 197 GLY OXT O N N 198 GLY H H N N 199 GLY H2 H N N 200 GLY HA2 H N N 201 GLY HA3 H N N 202 GLY HXT H N N 203 HIS N N N N 204 HIS CA C N S 205 HIS C C N N 206 HIS O O N N 207 HIS CB C N N 208 HIS CG C Y N 209 HIS ND1 N Y N 210 HIS CD2 C Y N 211 HIS CE1 C Y N 212 HIS NE2 N Y N 213 HIS OXT O N N 214 HIS H H N N 215 HIS H2 H N N 216 HIS HA H N N 217 HIS HB2 H N N 218 HIS HB3 H N N 219 HIS HD1 H N N 220 HIS HD2 H N N 221 HIS HE1 H N N 222 HIS HE2 H N N 223 HIS HXT H N N 224 HOH O O N N 225 HOH H1 H N N 226 HOH H2 H N N 227 ILE N N N N 228 ILE CA C N S 229 ILE C C N N 230 ILE O O N N 231 ILE CB C N S 232 ILE CG1 C N N 233 ILE CG2 C N N 234 ILE CD1 C N N 235 ILE OXT O N N 236 ILE H H N N 237 ILE H2 H N N 238 ILE HA H N N 239 ILE HB H N N 240 ILE HG12 H N N 241 ILE HG13 H N N 242 ILE HG21 H N N 243 ILE HG22 H N N 244 ILE HG23 H N N 245 ILE HD11 H N N 246 ILE HD12 H N N 247 ILE HD13 H N N 248 ILE HXT H N N 249 LEU N N N N 250 LEU CA C N S 251 LEU C C N N 252 LEU O O N N 253 LEU CB C N N 254 LEU CG C N N 255 LEU CD1 C N N 256 LEU CD2 C N N 257 LEU OXT O N N 258 LEU H H N N 259 LEU H2 H N N 260 LEU HA H N N 261 LEU HB2 H N N 262 LEU HB3 H N N 263 LEU HG H N N 264 LEU HD11 H N N 265 LEU HD12 H N N 266 LEU HD13 H N N 267 LEU HD21 H N N 268 LEU HD22 H N N 269 LEU HD23 H N N 270 LEU HXT H N N 271 LYS N N N N 272 LYS CA C N S 273 LYS C C N N 274 LYS O O N N 275 LYS CB C N N 276 LYS CG C N N 277 LYS CD C N N 278 LYS CE C N N 279 LYS NZ N N N 280 LYS OXT O N N 281 LYS H H N N 282 LYS H2 H N N 283 LYS HA H N N 284 LYS HB2 H N N 285 LYS HB3 H N N 286 LYS HG2 H N N 287 LYS HG3 H N N 288 LYS HD2 H N N 289 LYS HD3 H N N 290 LYS HE2 H N N 291 LYS HE3 H N N 292 LYS HZ1 H N N 293 LYS HZ2 H N N 294 LYS HZ3 H N N 295 LYS HXT H N N 296 MET N N N N 297 MET CA C N S 298 MET C C N N 299 MET O O N N 300 MET CB C N N 301 MET CG C N N 302 MET SD S N N 303 MET CE C N N 304 MET OXT O N N 305 MET H H N N 306 MET H2 H N N 307 MET HA H N N 308 MET HB2 H N N 309 MET HB3 H N N 310 MET HG2 H N N 311 MET HG3 H N N 312 MET HE1 H N N 313 MET HE2 H N N 314 MET HE3 H N N 315 MET HXT H N N 316 PHE N N N N 317 PHE CA C N S 318 PHE C C N N 319 PHE O O N N 320 PHE CB C N N 321 PHE CG C Y N 322 PHE CD1 C Y N 323 PHE CD2 C Y N 324 PHE CE1 C Y N 325 PHE CE2 C Y N 326 PHE CZ C Y N 327 PHE OXT O N N 328 PHE H H N N 329 PHE H2 H N N 330 PHE HA H N N 331 PHE HB2 H N N 332 PHE HB3 H N N 333 PHE HD1 H N N 334 PHE HD2 H N N 335 PHE HE1 H N N 336 PHE HE2 H N N 337 PHE HZ H N N 338 PHE HXT H N N 339 PRO N N N N 340 PRO CA C N S 341 PRO C C N N 342 PRO O O N N 343 PRO CB C N N 344 PRO CG C N N 345 PRO CD C N N 346 PRO OXT O N N 347 PRO H H N N 348 PRO HA H N N 349 PRO HB2 H N N 350 PRO HB3 H N N 351 PRO HG2 H N N 352 PRO HG3 H N N 353 PRO HD2 H N N 354 PRO HD3 H N N 355 PRO HXT H N N 356 SER N N N N 357 SER CA C N S 358 SER C C N N 359 SER O O N N 360 SER CB C N N 361 SER OG O N N 362 SER OXT O N N 363 SER H H N N 364 SER H2 H N N 365 SER HA H N N 366 SER HB2 H N N 367 SER HB3 H N N 368 SER HG H N N 369 SER HXT H N N 370 THR N N N N 371 THR CA C N S 372 THR C C N N 373 THR O O N N 374 THR CB C N R 375 THR OG1 O N N 376 THR CG2 C N N 377 THR OXT O N N 378 THR H H N N 379 THR H2 H N N 380 THR HA H N N 381 THR HB H N N 382 THR HG1 H N N 383 THR HG21 H N N 384 THR HG22 H N N 385 THR HG23 H N N 386 THR HXT H N N 387 TYR N N N N 388 TYR CA C N S 389 TYR C C N N 390 TYR O O N N 391 TYR CB C N N 392 TYR CG C Y N 393 TYR CD1 C Y N 394 TYR CD2 C Y N 395 TYR CE1 C Y N 396 TYR CE2 C Y N 397 TYR CZ C Y N 398 TYR OH O N N 399 TYR OXT O N N 400 TYR H H N N 401 TYR H2 H N N 402 TYR HA H N N 403 TYR HB2 H N N 404 TYR HB3 H N N 405 TYR HD1 H N N 406 TYR HD2 H N N 407 TYR HE1 H N N 408 TYR HE2 H N N 409 TYR HH H N N 410 TYR HXT H N N 411 VAL N N N N 412 VAL CA C N S 413 VAL C C N N 414 VAL O O N N 415 VAL CB C N N 416 VAL CG1 C N N 417 VAL CG2 C N N 418 VAL OXT O N N 419 VAL H H N N 420 VAL H2 H N N 421 VAL HA H N N 422 VAL HB H N N 423 VAL HG11 H N N 424 VAL HG12 H N N 425 VAL HG13 H N N 426 VAL HG21 H N N 427 VAL HG22 H N N 428 VAL HG23 H N N 429 VAL HXT H N N 430 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AK3 C C1 sing N N 1 A1AK3 C2 C1 sing N N 2 A1AK3 C1 C3 sing N N 3 A1AK3 C4 C3 sing N N 4 A1AK3 C4 C5 doub Y N 5 A1AK3 C5 C6 sing Y N 6 A1AK3 C6 S sing N N 7 A1AK3 S C7 sing N N 8 A1AK3 C7 C8 sing N N 9 A1AK3 C8 C9 sing N N 10 A1AK3 O S doub N N 11 A1AK3 O1 S doub N N 12 A1AK3 C6 C10 doub Y N 13 A1AK3 C9 C10 sing N N 14 A1AK3 C10 C11 sing Y N 15 A1AK3 C11 C12 doub Y N 16 A1AK3 C12 C4 sing Y N 17 A1AK3 C3 N sing N N 18 A1AK3 N C13 sing N N 19 A1AK3 C13 N1 doub Y N 20 A1AK3 N1 C14 sing Y N 21 A1AK3 C14 N2 doub Y N 22 A1AK3 N2 C15 sing Y N 23 A1AK3 C15 C16 doub Y N 24 A1AK3 C13 C16 sing Y N 25 A1AK3 C16 C17 sing Y N 26 A1AK3 C17 C18 doub Y N 27 A1AK3 C18 C19 sing N N 28 A1AK3 N3 C19 sing N N 29 A1AK3 C20 N3 sing N N 30 A1AK3 C20 C21 sing N N 31 A1AK3 C21 N4 sing N N 32 A1AK3 C22 N4 sing N N 33 A1AK3 N4 C23 sing N N 34 A1AK3 C23 C24 sing N N 35 A1AK3 C24 C20 sing N N 36 A1AK3 C19 O2 doub N N 37 A1AK3 N5 C18 sing Y N 38 A1AK3 C15 N5 sing Y N 39 A1AK3 N3 H22 sing N N 40 A1AK3 C5 H10 sing N N 41 A1AK3 C7 H12 sing N N 42 A1AK3 C7 H11 sing N N 43 A1AK3 C8 H13 sing N N 44 A1AK3 C8 H14 sing N N 45 A1AK3 C17 H21 sing N N 46 A1AK3 C20 H1 sing N N 47 A1AK3 C21 H24 sing N N 48 A1AK3 C21 H23 sing N N 49 A1AK3 C22 H25 sing N N 50 A1AK3 C22 H26 sing N N 51 A1AK3 C22 H27 sing N N 52 A1AK3 C24 H31 sing N N 53 A1AK3 C24 H30 sing N N 54 A1AK3 C23 H29 sing N N 55 A1AK3 C23 H28 sing N N 56 A1AK3 N5 H2 sing N N 57 A1AK3 C14 H20 sing N N 58 A1AK3 N H19 sing N N 59 A1AK3 C3 H sing N N 60 A1AK3 C1 H6 sing N N 61 A1AK3 C2 H7 sing N N 62 A1AK3 C2 H9 sing N N 63 A1AK3 C2 H8 sing N N 64 A1AK3 C H3 sing N N 65 A1AK3 C H4 sing N N 66 A1AK3 C H5 sing N N 67 A1AK3 C12 H18 sing N N 68 A1AK3 C11 H17 sing N N 69 A1AK3 C9 H15 sing N N 70 A1AK3 C9 H16 sing N N 71 ALA N CA sing N N 72 ALA N H sing N N 73 ALA N H2 sing N N 74 ALA CA C sing N N 75 ALA CA CB sing N N 76 ALA CA HA sing N N 77 ALA C O doub N N 78 ALA C OXT sing N N 79 ALA CB HB1 sing N N 80 ALA CB HB2 sing N N 81 ALA CB HB3 sing N N 82 ALA OXT HXT sing N N 83 ARG N CA sing N N 84 ARG N H sing N N 85 ARG N H2 sing N N 86 ARG CA C sing N N 87 ARG CA CB sing N N 88 ARG CA HA sing N N 89 ARG C O doub N N 90 ARG C OXT sing N N 91 ARG CB CG sing N N 92 ARG CB HB2 sing N N 93 ARG CB HB3 sing N N 94 ARG CG CD sing N N 95 ARG CG HG2 sing N N 96 ARG CG HG3 sing N N 97 ARG CD NE sing N N 98 ARG CD HD2 sing N N 99 ARG CD HD3 sing N N 100 ARG NE CZ sing N N 101 ARG NE HE sing N N 102 ARG CZ NH1 sing N N 103 ARG CZ NH2 doub N N 104 ARG NH1 HH11 sing N N 105 ARG NH1 HH12 sing N N 106 ARG NH2 HH21 sing N N 107 ARG NH2 HH22 sing N N 108 ARG OXT HXT sing N N 109 ASN N CA sing N N 110 ASN N H sing N N 111 ASN N H2 sing N N 112 ASN CA C sing N N 113 ASN CA CB sing N N 114 ASN CA HA sing N N 115 ASN C O doub N N 116 ASN C OXT sing N N 117 ASN CB CG sing N N 118 ASN CB HB2 sing N N 119 ASN CB HB3 sing N N 120 ASN CG OD1 doub N N 121 ASN CG ND2 sing N N 122 ASN ND2 HD21 sing N N 123 ASN ND2 HD22 sing N N 124 ASN OXT HXT sing N N 125 ASP N CA sing N N 126 ASP N H sing N N 127 ASP N H2 sing N N 128 ASP CA C sing N N 129 ASP CA CB sing N N 130 ASP CA HA sing N N 131 ASP C O doub N N 132 ASP C OXT sing N N 133 ASP CB CG sing N N 134 ASP CB HB2 sing N N 135 ASP CB HB3 sing N N 136 ASP CG OD1 doub N N 137 ASP CG OD2 sing N N 138 ASP OD2 HD2 sing N N 139 ASP OXT HXT sing N N 140 CYS N CA sing N N 141 CYS N H sing N N 142 CYS N H2 sing N N 143 CYS CA C sing N N 144 CYS CA CB sing N N 145 CYS CA HA sing N N 146 CYS C O doub N N 147 CYS C OXT sing N N 148 CYS CB SG sing N N 149 CYS CB HB2 sing N N 150 CYS CB HB3 sing N N 151 CYS SG HG sing N N 152 CYS OXT HXT sing N N 153 GLN N CA sing N N 154 GLN N H sing N N 155 GLN N H2 sing N N 156 GLN CA C sing N N 157 GLN CA CB sing N N 158 GLN CA HA sing N N 159 GLN C O doub N N 160 GLN C OXT sing N N 161 GLN CB CG sing N N 162 GLN CB HB2 sing N N 163 GLN CB HB3 sing N N 164 GLN CG CD sing N N 165 GLN CG HG2 sing N N 166 GLN CG HG3 sing N N 167 GLN CD OE1 doub N N 168 GLN CD NE2 sing N N 169 GLN NE2 HE21 sing N N 170 GLN NE2 HE22 sing N N 171 GLN OXT HXT sing N N 172 GLU N CA sing N N 173 GLU N H sing N N 174 GLU N H2 sing N N 175 GLU CA C sing N N 176 GLU CA CB sing N N 177 GLU CA HA sing N N 178 GLU C O doub N N 179 GLU C OXT sing N N 180 GLU CB CG sing N N 181 GLU CB HB2 sing N N 182 GLU CB HB3 sing N N 183 GLU CG CD sing N N 184 GLU CG HG2 sing N N 185 GLU CG HG3 sing N N 186 GLU CD OE1 doub N N 187 GLU CD OE2 sing N N 188 GLU OE2 HE2 sing N N 189 GLU OXT HXT sing N N 190 GLY N CA sing N N 191 GLY N H sing N N 192 GLY N H2 sing N N 193 GLY CA C sing N N 194 GLY CA HA2 sing N N 195 GLY CA HA3 sing N N 196 GLY C O doub N N 197 GLY C OXT sing N N 198 GLY OXT HXT sing N N 199 HIS N CA sing N N 200 HIS N H sing N N 201 HIS N H2 sing N N 202 HIS CA C sing N N 203 HIS CA CB sing N N 204 HIS CA HA sing N N 205 HIS C O doub N N 206 HIS C OXT sing N N 207 HIS CB CG sing N N 208 HIS CB HB2 sing N N 209 HIS CB HB3 sing N N 210 HIS CG ND1 sing Y N 211 HIS CG CD2 doub Y N 212 HIS ND1 CE1 doub Y N 213 HIS ND1 HD1 sing N N 214 HIS CD2 NE2 sing Y N 215 HIS CD2 HD2 sing N N 216 HIS CE1 NE2 sing Y N 217 HIS CE1 HE1 sing N N 218 HIS NE2 HE2 sing N N 219 HIS OXT HXT sing N N 220 HOH O H1 sing N N 221 HOH O H2 sing N N 222 ILE N CA sing N N 223 ILE N H sing N N 224 ILE N H2 sing N N 225 ILE CA C sing N N 226 ILE CA CB sing N N 227 ILE CA HA sing N N 228 ILE C O doub N N 229 ILE C OXT sing N N 230 ILE CB CG1 sing N N 231 ILE CB CG2 sing N N 232 ILE CB HB sing N N 233 ILE CG1 CD1 sing N N 234 ILE CG1 HG12 sing N N 235 ILE CG1 HG13 sing N N 236 ILE CG2 HG21 sing N N 237 ILE CG2 HG22 sing N N 238 ILE CG2 HG23 sing N N 239 ILE CD1 HD11 sing N N 240 ILE CD1 HD12 sing N N 241 ILE CD1 HD13 sing N N 242 ILE OXT HXT sing N N 243 LEU N CA sing N N 244 LEU N H sing N N 245 LEU N H2 sing N N 246 LEU CA C sing N N 247 LEU CA CB sing N N 248 LEU CA HA sing N N 249 LEU C O doub N N 250 LEU C OXT sing N N 251 LEU CB CG sing N N 252 LEU CB HB2 sing N N 253 LEU CB HB3 sing N N 254 LEU CG CD1 sing N N 255 LEU CG CD2 sing N N 256 LEU CG HG sing N N 257 LEU CD1 HD11 sing N N 258 LEU CD1 HD12 sing N N 259 LEU CD1 HD13 sing N N 260 LEU CD2 HD21 sing N N 261 LEU CD2 HD22 sing N N 262 LEU CD2 HD23 sing N N 263 LEU OXT HXT sing N N 264 LYS N CA sing N N 265 LYS N H sing N N 266 LYS N H2 sing N N 267 LYS CA C sing N N 268 LYS CA CB sing N N 269 LYS CA HA sing N N 270 LYS C O doub N N 271 LYS C OXT sing N N 272 LYS CB CG sing N N 273 LYS CB HB2 sing N N 274 LYS CB HB3 sing N N 275 LYS CG CD sing N N 276 LYS CG HG2 sing N N 277 LYS CG HG3 sing N N 278 LYS CD CE sing N N 279 LYS CD HD2 sing N N 280 LYS CD HD3 sing N N 281 LYS CE NZ sing N N 282 LYS CE HE2 sing N N 283 LYS CE HE3 sing N N 284 LYS NZ HZ1 sing N N 285 LYS NZ HZ2 sing N N 286 LYS NZ HZ3 sing N N 287 LYS OXT HXT sing N N 288 MET N CA sing N N 289 MET N H sing N N 290 MET N H2 sing N N 291 MET CA C sing N N 292 MET CA CB sing N N 293 MET CA HA sing N N 294 MET C O doub N N 295 MET C OXT sing N N 296 MET CB CG sing N N 297 MET CB HB2 sing N N 298 MET CB HB3 sing N N 299 MET CG SD sing N N 300 MET CG HG2 sing N N 301 MET CG HG3 sing N N 302 MET SD CE sing N N 303 MET CE HE1 sing N N 304 MET CE HE2 sing N N 305 MET CE HE3 sing N N 306 MET OXT HXT sing N N 307 PHE N CA sing N N 308 PHE N H sing N N 309 PHE N H2 sing N N 310 PHE CA C sing N N 311 PHE CA CB sing N N 312 PHE CA HA sing N N 313 PHE C O doub N N 314 PHE C OXT sing N N 315 PHE CB CG sing N N 316 PHE CB HB2 sing N N 317 PHE CB HB3 sing N N 318 PHE CG CD1 doub Y N 319 PHE CG CD2 sing Y N 320 PHE CD1 CE1 sing Y N 321 PHE CD1 HD1 sing N N 322 PHE CD2 CE2 doub Y N 323 PHE CD2 HD2 sing N N 324 PHE CE1 CZ doub Y N 325 PHE CE1 HE1 sing N N 326 PHE CE2 CZ sing Y N 327 PHE CE2 HE2 sing N N 328 PHE CZ HZ sing N N 329 PHE OXT HXT sing N N 330 PRO N CA sing N N 331 PRO N CD sing N N 332 PRO N H sing N N 333 PRO CA C sing N N 334 PRO CA CB sing N N 335 PRO CA HA sing N N 336 PRO C O doub N N 337 PRO C OXT sing N N 338 PRO CB CG sing N N 339 PRO CB HB2 sing N N 340 PRO CB HB3 sing N N 341 PRO CG CD sing N N 342 PRO CG HG2 sing N N 343 PRO CG HG3 sing N N 344 PRO CD HD2 sing N N 345 PRO CD HD3 sing N N 346 PRO OXT HXT sing N N 347 SER N CA sing N N 348 SER N H sing N N 349 SER N H2 sing N N 350 SER CA C sing N N 351 SER CA CB sing N N 352 SER CA HA sing N N 353 SER C O doub N N 354 SER C OXT sing N N 355 SER CB OG sing N N 356 SER CB HB2 sing N N 357 SER CB HB3 sing N N 358 SER OG HG sing N N 359 SER OXT HXT sing N N 360 THR N CA sing N N 361 THR N H sing N N 362 THR N H2 sing N N 363 THR CA C sing N N 364 THR CA CB sing N N 365 THR CA HA sing N N 366 THR C O doub N N 367 THR C OXT sing N N 368 THR CB OG1 sing N N 369 THR CB CG2 sing N N 370 THR CB HB sing N N 371 THR OG1 HG1 sing N N 372 THR CG2 HG21 sing N N 373 THR CG2 HG22 sing N N 374 THR CG2 HG23 sing N N 375 THR OXT HXT sing N N 376 TYR N CA sing N N 377 TYR N H sing N N 378 TYR N H2 sing N N 379 TYR CA C sing N N 380 TYR CA CB sing N N 381 TYR CA HA sing N N 382 TYR C O doub N N 383 TYR C OXT sing N N 384 TYR CB CG sing N N 385 TYR CB HB2 sing N N 386 TYR CB HB3 sing N N 387 TYR CG CD1 doub Y N 388 TYR CG CD2 sing Y N 389 TYR CD1 CE1 sing Y N 390 TYR CD1 HD1 sing N N 391 TYR CD2 CE2 doub Y N 392 TYR CD2 HD2 sing N N 393 TYR CE1 CZ doub Y N 394 TYR CE1 HE1 sing N N 395 TYR CE2 CZ sing Y N 396 TYR CE2 HE2 sing N N 397 TYR CZ OH sing N N 398 TYR OH HH sing N N 399 TYR OXT HXT sing N N 400 VAL N CA sing N N 401 VAL N H sing N N 402 VAL N H2 sing N N 403 VAL CA C sing N N 404 VAL CA CB sing N N 405 VAL CA HA sing N N 406 VAL C O doub N N 407 VAL C OXT sing N N 408 VAL CB CG1 sing N N 409 VAL CB CG2 sing N N 410 VAL CB HB sing N N 411 VAL CG1 HG11 sing N N 412 VAL CG1 HG12 sing N N 413 VAL CG1 HG13 sing N N 414 VAL CG2 HG21 sing N N 415 VAL CG2 HG22 sing N N 416 VAL CG2 HG23 sing N N 417 VAL OXT HXT sing N N 418 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number U19AI171399 _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_id G_1002283 _pdbx_deposit_group.group_description None _pdbx_deposit_group.group_title 'Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre' _pdbx_deposit_group.group_type 'changed state' # _atom_sites.entry_id 7GZV _atom_sites.fract_transf_matrix[1][1] 0.026074 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005224 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030169 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015850 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_