data_7HJM # _entry.id 7HJM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7HJM pdb_00007hjm 10.2210/pdb7hjm/pdb WWPDB D_1001407556 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-08-20 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 7HJM _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2024-10-08 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.name_last Fraser _pdbx_contact_author.name_first James _pdbx_contact_author.name_mi S. _pdbx_contact_author.email jaimefraser@gmail.com _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5080-2859 # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Correy, G.J.' 1 'Fraser, J.S.' 2 # _citation.id primary _citation.title 'Fragment screen against ABLE' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Correy, G.J.' ? 1 primary 'Fraser, J.S.' ? 2 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'De novo designed ABLE protein' 13817.490 1 ? ? ? 'HIS6 purification tag (MHHHHHHENLYFQ) cleaved with TEV protease' 2 non-polymer syn 4,6-dimethylpyrimidin-2-amine 123.156 1 ? ? ? ? 3 water nat water 18.015 130 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRHEELLNRILEKARREGNKEAVTLMNEFTATFQ TGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIAKAL ; _entity_poly.pdbx_seq_one_letter_code_can ;SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRHEELLNRILEKARREGNKEAVTLMNEFTATFQ TGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIAKAL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 4,6-dimethylpyrimidin-2-amine 5ZE 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 VAL n 1 3 LYS n 1 4 SER n 1 5 GLU n 1 6 TYR n 1 7 ALA n 1 8 GLU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 VAL n 1 13 GLY n 1 14 GLN n 1 15 GLU n 1 16 ALA n 1 17 VAL n 1 18 ALA n 1 19 VAL n 1 20 PHE n 1 21 ASN n 1 22 THR n 1 23 MET n 1 24 LYS n 1 25 ALA n 1 26 ALA n 1 27 PHE n 1 28 GLN n 1 29 ASN n 1 30 GLY n 1 31 ASP n 1 32 LYS n 1 33 GLU n 1 34 ALA n 1 35 VAL n 1 36 ALA n 1 37 GLN n 1 38 TYR n 1 39 LEU n 1 40 ALA n 1 41 ARG n 1 42 LEU n 1 43 ALA n 1 44 SER n 1 45 LEU n 1 46 TYR n 1 47 THR n 1 48 ARG n 1 49 HIS n 1 50 GLU n 1 51 GLU n 1 52 LEU n 1 53 LEU n 1 54 ASN n 1 55 ARG n 1 56 ILE n 1 57 LEU n 1 58 GLU n 1 59 LYS n 1 60 ALA n 1 61 ARG n 1 62 ARG n 1 63 GLU n 1 64 GLY n 1 65 ASN n 1 66 LYS n 1 67 GLU n 1 68 ALA n 1 69 VAL n 1 70 THR n 1 71 LEU n 1 72 MET n 1 73 ASN n 1 74 GLU n 1 75 PHE n 1 76 THR n 1 77 ALA n 1 78 THR n 1 79 PHE n 1 80 GLN n 1 81 THR n 1 82 GLY n 1 83 LYS n 1 84 SER n 1 85 ILE n 1 86 PHE n 1 87 ASN n 1 88 ALA n 1 89 MET n 1 90 VAL n 1 91 ALA n 1 92 ALA n 1 93 PHE n 1 94 LYS n 1 95 ASN n 1 96 GLY n 1 97 ASP n 1 98 ASP n 1 99 ASP n 1 100 SER n 1 101 PHE n 1 102 GLU n 1 103 SER n 1 104 TYR n 1 105 LEU n 1 106 GLN n 1 107 ALA n 1 108 LEU n 1 109 GLU n 1 110 LYS n 1 111 VAL n 1 112 THR n 1 113 ALA n 1 114 LYS n 1 115 GLY n 1 116 GLU n 1 117 THR n 1 118 LEU n 1 119 ALA n 1 120 ASP n 1 121 GLN n 1 122 ILE n 1 123 ALA n 1 124 LYS n 1 125 ALA n 1 126 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 126 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5ZE non-polymer . 4,6-dimethylpyrimidin-2-amine ? 'C6 H9 N3' 123.156 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 LEU 126 126 126 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5ZE 1 201 201 5ZE LA1 A . C 3 HOH 1 301 17 HOH HOH A . C 3 HOH 2 302 162 HOH HOH A . C 3 HOH 3 303 64 HOH HOH A . C 3 HOH 4 304 102 HOH HOH A . C 3 HOH 5 305 107 HOH HOH A . C 3 HOH 6 306 116 HOH HOH A . C 3 HOH 7 307 70 HOH HOH A . C 3 HOH 8 308 29 HOH HOH A . C 3 HOH 9 309 303 HOH HOH A . C 3 HOH 10 310 266 HOH HOH A . C 3 HOH 11 311 91 HOH HOH A . C 3 HOH 12 312 100 HOH HOH A . C 3 HOH 13 313 15 HOH HOH A . C 3 HOH 14 314 10 HOH HOH A . C 3 HOH 15 315 2 HOH HOH A . C 3 HOH 16 316 83 HOH HOH A . C 3 HOH 17 317 66 HOH HOH A . C 3 HOH 18 318 308 HOH HOH A . C 3 HOH 19 319 21 HOH HOH A . C 3 HOH 20 320 159 HOH HOH A . C 3 HOH 21 321 114 HOH HOH A . C 3 HOH 22 322 84 HOH HOH A . C 3 HOH 23 323 24 HOH HOH A . C 3 HOH 24 324 12 HOH HOH A . C 3 HOH 25 325 44 HOH HOH A . C 3 HOH 26 326 27 HOH HOH A . C 3 HOH 27 327 5 HOH HOH A . C 3 HOH 28 328 31 HOH HOH A . C 3 HOH 29 329 16 HOH HOH A . C 3 HOH 30 330 123 HOH HOH A . C 3 HOH 31 331 134 HOH HOH A . C 3 HOH 32 332 41 HOH HOH A . C 3 HOH 33 333 306 HOH HOH A . C 3 HOH 34 334 130 HOH HOH A . C 3 HOH 35 335 7 HOH HOH A . C 3 HOH 36 336 11 HOH HOH A . C 3 HOH 37 337 67 HOH HOH A . C 3 HOH 38 338 51 HOH HOH A . C 3 HOH 39 339 183 HOH HOH A . C 3 HOH 40 340 111 HOH HOH A . C 3 HOH 41 341 227 HOH HOH A . C 3 HOH 42 342 128 HOH HOH A . C 3 HOH 43 343 8 HOH HOH A . C 3 HOH 44 344 37 HOH HOH A . C 3 HOH 45 345 32 HOH HOH A . C 3 HOH 46 346 309 HOH HOH A . C 3 HOH 47 347 69 HOH HOH A . C 3 HOH 48 348 92 HOH HOH A . C 3 HOH 49 349 80 HOH HOH A . C 3 HOH 50 350 96 HOH HOH A . C 3 HOH 51 351 30 HOH HOH A . C 3 HOH 52 352 171 HOH HOH A . C 3 HOH 53 353 239 HOH HOH A . C 3 HOH 54 354 75 HOH HOH A . C 3 HOH 55 355 304 HOH HOH A . C 3 HOH 56 356 49 HOH HOH A . C 3 HOH 57 357 59 HOH HOH A . C 3 HOH 58 358 28 HOH HOH A . C 3 HOH 59 359 18 HOH HOH A . C 3 HOH 60 360 1 HOH HOH A . C 3 HOH 61 361 33 HOH HOH A . C 3 HOH 62 362 6 HOH HOH A . C 3 HOH 63 363 19 HOH HOH A . C 3 HOH 64 364 22 HOH HOH A . C 3 HOH 65 365 1 HOH HOH A . C 3 HOH 66 366 117 HOH HOH A . C 3 HOH 67 367 39 HOH HOH A . C 3 HOH 68 368 54 HOH HOH A . C 3 HOH 69 369 94 HOH HOH A . C 3 HOH 70 370 110 HOH HOH A . C 3 HOH 71 371 43 HOH HOH A . C 3 HOH 72 372 9 HOH HOH A . C 3 HOH 73 373 307 HOH HOH A . C 3 HOH 74 374 104 HOH HOH A . C 3 HOH 75 375 40 HOH HOH A . C 3 HOH 76 376 3 HOH HOH A . C 3 HOH 77 377 61 HOH HOH A . C 3 HOH 78 378 282 HOH HOH A . C 3 HOH 79 379 13 HOH HOH A . C 3 HOH 80 380 125 HOH HOH A . C 3 HOH 81 381 63 HOH HOH A . C 3 HOH 82 382 20 HOH HOH A . C 3 HOH 83 383 23 HOH HOH A . C 3 HOH 84 384 71 HOH HOH A . C 3 HOH 85 385 176 HOH HOH A . C 3 HOH 86 386 263 HOH HOH A . C 3 HOH 87 387 120 HOH HOH A . C 3 HOH 88 388 34 HOH HOH A . C 3 HOH 89 389 221 HOH HOH A . C 3 HOH 90 390 224 HOH HOH A . C 3 HOH 91 391 180 HOH HOH A . C 3 HOH 92 392 182 HOH HOH A . C 3 HOH 93 393 73 HOH HOH A . C 3 HOH 94 394 82 HOH HOH A . C 3 HOH 95 395 56 HOH HOH A . C 3 HOH 96 396 58 HOH HOH A . C 3 HOH 97 397 72 HOH HOH A . C 3 HOH 98 398 65 HOH HOH A . C 3 HOH 99 399 163 HOH HOH A . C 3 HOH 100 400 262 HOH HOH A . C 3 HOH 101 401 135 HOH HOH A . C 3 HOH 102 402 172 HOH HOH A . C 3 HOH 103 403 275 HOH HOH A . C 3 HOH 104 404 52 HOH HOH A . C 3 HOH 105 405 87 HOH HOH A . C 3 HOH 106 406 196 HOH HOH A . C 3 HOH 107 407 305 HOH HOH A . C 3 HOH 108 408 14 HOH HOH A . C 3 HOH 109 409 79 HOH HOH A . C 3 HOH 110 410 295 HOH HOH A . C 3 HOH 111 411 98 HOH HOH A . C 3 HOH 112 412 140 HOH HOH A . C 3 HOH 113 413 139 HOH HOH A . C 3 HOH 114 414 46 HOH HOH A . C 3 HOH 115 415 189 HOH HOH A . C 3 HOH 116 416 113 HOH HOH A . C 3 HOH 117 417 119 HOH HOH A . C 3 HOH 118 418 48 HOH HOH A . C 3 HOH 119 419 35 HOH HOH A . C 3 HOH 120 420 47 HOH HOH A . C 3 HOH 121 421 126 HOH HOH A . C 3 HOH 122 422 45 HOH HOH A . C 3 HOH 123 423 97 HOH HOH A . C 3 HOH 124 424 136 HOH HOH A . C 3 HOH 125 425 283 HOH HOH A . C 3 HOH 126 426 101 HOH HOH A . C 3 HOH 127 427 81 HOH HOH A . C 3 HOH 128 428 197 HOH HOH A . C 3 HOH 129 429 129 HOH HOH A . C 3 HOH 130 430 106 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.20.1_4487 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 Aimless 0.8.2 14/06/24 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.28 'Apr. 15, 2021' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS 'Jun 30, 2023' 'Jun. 30, 2023' program 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de 'data reduction' http://xds.mpimf-heidelberg.mpg.de ? ? 5 PHASER 2.8.3 'May 17, 2020' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing https://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software ? ? # _cell.entry_id 7HJM _cell.length_a 26.012 _cell.length_b 47.046 _cell.length_c 46.449 _cell.angle_alpha 90.000 _cell.angle_beta 103.000 _cell.angle_gamma 90.000 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HJM _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 _exptl.entry_id 7HJM # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.31 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details '220 mM sodium malonate, 22% PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.pdbx_collection_date 2023-03-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11583 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list 1.11583 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7HJM _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 47.050 _reflns.d_resolution_high 1.550 _reflns.number_obs 15773 _reflns.number_all ? _reflns.percent_possible_obs 99.000 _reflns.pdbx_Rmerge_I_obs 0.023 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.400 _reflns.B_iso_Wilson_estimate 16.580 _reflns.pdbx_redundancy 3.200 _reflns.pdbx_Rrim_I_all 0.027 _reflns.pdbx_Rpim_I_all 0.015 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 50321 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.550 1.580 ? 1711 715 ? 0.134 ? ? ? 2.400 ? 5.800 ? ? ? ? ? ? 91.800 0.170 0.102 0.982 1 2 8.490 47.050 ? 348 107 ? 0.017 ? ? ? 3.300 ? 62.300 ? ? ? ? ? ? 96.800 0.021 0.011 1.000 # _refine.entry_id 7HJM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.5500 _refine.ls_d_res_low 32.6200 _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.7600 _refine.ls_number_reflns_obs 15747 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1782 _refine.ls_R_factor_R_work 0.1760 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2206 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0400 _refine.ls_number_reflns_R_free 794 _refine.ls_number_reflns_R_work 14953 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 21.9302 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 89.070 _refine.B_iso_min 5.130 _refine.pdbx_overall_phase_error 24.5300 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5500 _refine_hist.d_res_low 32.6200 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 1119 _refine_hist.pdbx_number_residues_total 126 _refine_hist.pdbx_B_iso_mean_ligand 22.97 _refine_hist.pdbx_B_iso_mean_solvent 27.75 _refine_hist.pdbx_number_atoms_protein 971 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 1.5500 1.6500 6 97.0000 2457 . 0.1939 0.2281 . 101 0.0000 2558 . 'X-RAY DIFFRACTION' 1.6500 1.7700 6 99.0000 2501 . 0.1815 0.2344 . 130 0.0000 2631 . 'X-RAY DIFFRACTION' 1.7800 1.9500 6 99.0000 2478 . 0.1837 0.2336 . 132 0.0000 2610 . 'X-RAY DIFFRACTION' 1.9500 2.2400 6 99.0000 2508 . 0.1774 0.2282 . 140 0.0000 2648 . 'X-RAY DIFFRACTION' 2.2400 2.8200 6 99.0000 2467 . 0.1691 0.2066 . 164 0.0000 2631 . 'X-RAY DIFFRACTION' 2.8200 32.6200 6 99.0000 2542 . 0.1741 0.2208 . 127 0.0000 2669 . 'X-RAY DIFFRACTION' # _struct.entry_id 7HJM _struct.title 'PanDDA analysis group deposition -- Crystal structure of ABLE in complex with ZINC000000163774' _struct.pdbx_CASP_flag ? _struct.pdbx_model_details ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7HJM _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'Protein design, four-helix bundle, apixaban, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7HJM _struct_ref.pdbx_db_accession 7HJM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7HJM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7HJM _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 126 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 126 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 7050 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 1 ? GLY A 30 ? SER A 1 GLY A 30 1 ? 30 HELX_P HELX_P2 AA2 ASP A 31 ? GLY A 64 ? ASP A 31 GLY A 64 1 ? 34 HELX_P HELX_P3 AA3 ASN A 65 ? GLY A 96 ? ASN A 65 GLY A 96 1 ? 32 HELX_P HELX_P4 AA4 ASP A 97 ? GLY A 115 ? ASP A 97 GLY A 115 1 ? 19 HELX_P HELX_P5 AA5 GLY A 115 ? LEU A 126 ? GLY A 115 LEU A 126 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 7HJM _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ1 A LYS 24 ? B O A HOH 305 ? ? 1.60 2 1 O A HOH 321 ? ? O A HOH 369 ? ? 2.13 # _phasing.method MR # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 430 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.00 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5ZE C1 C N N 1 5ZE C2 C Y N 2 5ZE C3 C Y N 3 5ZE C4 C Y N 4 5ZE C5 C N N 5 5ZE N6 N Y N 6 5ZE C7 C Y N 7 5ZE N8 N N N 8 5ZE N9 N Y N 9 5ZE H1 H N N 10 5ZE H2 H N N 11 5ZE H3 H N N 12 5ZE H4 H N N 13 5ZE H5 H N N 14 5ZE H6 H N N 15 5ZE H7 H N N 16 5ZE H8 H N N 17 5ZE H9 H N N 18 ALA N N N N 19 ALA CA C N S 20 ALA C C N N 21 ALA O O N N 22 ALA CB C N N 23 ALA OXT O N N 24 ALA H H N N 25 ALA H2 H N N 26 ALA HA H N N 27 ALA HB1 H N N 28 ALA HB2 H N N 29 ALA HB3 H N N 30 ALA HXT H N N 31 ARG N N N N 32 ARG CA C N S 33 ARG C C N N 34 ARG O O N N 35 ARG CB C N N 36 ARG CG C N N 37 ARG CD C N N 38 ARG NE N N N 39 ARG CZ C N N 40 ARG NH1 N N N 41 ARG NH2 N N N 42 ARG OXT O N N 43 ARG H H N N 44 ARG H2 H N N 45 ARG HA H N N 46 ARG HB2 H N N 47 ARG HB3 H N N 48 ARG HG2 H N N 49 ARG HG3 H N N 50 ARG HD2 H N N 51 ARG HD3 H N N 52 ARG HE H N N 53 ARG HH11 H N N 54 ARG HH12 H N N 55 ARG HH21 H N N 56 ARG HH22 H N N 57 ARG HXT H N N 58 ASN N N N N 59 ASN CA C N S 60 ASN C C N N 61 ASN O O N N 62 ASN CB C N N 63 ASN CG C N N 64 ASN OD1 O N N 65 ASN ND2 N N N 66 ASN OXT O N N 67 ASN H H N N 68 ASN H2 H N N 69 ASN HA H N N 70 ASN HB2 H N N 71 ASN HB3 H N N 72 ASN HD21 H N N 73 ASN HD22 H N N 74 ASN HXT H N N 75 ASP N N N N 76 ASP CA C N S 77 ASP C C N N 78 ASP O O N N 79 ASP CB C N N 80 ASP CG C N N 81 ASP OD1 O N N 82 ASP OD2 O N N 83 ASP OXT O N N 84 ASP H H N N 85 ASP H2 H N N 86 ASP HA H N N 87 ASP HB2 H N N 88 ASP HB3 H N N 89 ASP HD2 H N N 90 ASP HXT H N N 91 GLN N N N N 92 GLN CA C N S 93 GLN C C N N 94 GLN O O N N 95 GLN CB C N N 96 GLN CG C N N 97 GLN CD C N N 98 GLN OE1 O N N 99 GLN NE2 N N N 100 GLN OXT O N N 101 GLN H H N N 102 GLN H2 H N N 103 GLN HA H N N 104 GLN HB2 H N N 105 GLN HB3 H N N 106 GLN HG2 H N N 107 GLN HG3 H N N 108 GLN HE21 H N N 109 GLN HE22 H N N 110 GLN HXT H N N 111 GLU N N N N 112 GLU CA C N S 113 GLU C C N N 114 GLU O O N N 115 GLU CB C N N 116 GLU CG C N N 117 GLU CD C N N 118 GLU OE1 O N N 119 GLU OE2 O N N 120 GLU OXT O N N 121 GLU H H N N 122 GLU H2 H N N 123 GLU HA H N N 124 GLU HB2 H N N 125 GLU HB3 H N N 126 GLU HG2 H N N 127 GLU HG3 H N N 128 GLU HE2 H N N 129 GLU HXT H N N 130 GLY N N N N 131 GLY CA C N N 132 GLY C C N N 133 GLY O O N N 134 GLY OXT O N N 135 GLY H H N N 136 GLY H2 H N N 137 GLY HA2 H N N 138 GLY HA3 H N N 139 GLY HXT H N N 140 HIS N N N N 141 HIS CA C N S 142 HIS C C N N 143 HIS O O N N 144 HIS CB C N N 145 HIS CG C Y N 146 HIS ND1 N Y N 147 HIS CD2 C Y N 148 HIS CE1 C Y N 149 HIS NE2 N Y N 150 HIS OXT O N N 151 HIS H H N N 152 HIS H2 H N N 153 HIS HA H N N 154 HIS HB2 H N N 155 HIS HB3 H N N 156 HIS HD1 H N N 157 HIS HD2 H N N 158 HIS HE1 H N N 159 HIS HE2 H N N 160 HIS HXT H N N 161 HOH O O N N 162 HOH H1 H N N 163 HOH H2 H N N 164 ILE N N N N 165 ILE CA C N S 166 ILE C C N N 167 ILE O O N N 168 ILE CB C N S 169 ILE CG1 C N N 170 ILE CG2 C N N 171 ILE CD1 C N N 172 ILE OXT O N N 173 ILE H H N N 174 ILE H2 H N N 175 ILE HA H N N 176 ILE HB H N N 177 ILE HG12 H N N 178 ILE HG13 H N N 179 ILE HG21 H N N 180 ILE HG22 H N N 181 ILE HG23 H N N 182 ILE HD11 H N N 183 ILE HD12 H N N 184 ILE HD13 H N N 185 ILE HXT H N N 186 LEU N N N N 187 LEU CA C N S 188 LEU C C N N 189 LEU O O N N 190 LEU CB C N N 191 LEU CG C N N 192 LEU CD1 C N N 193 LEU CD2 C N N 194 LEU OXT O N N 195 LEU H H N N 196 LEU H2 H N N 197 LEU HA H N N 198 LEU HB2 H N N 199 LEU HB3 H N N 200 LEU HG H N N 201 LEU HD11 H N N 202 LEU HD12 H N N 203 LEU HD13 H N N 204 LEU HD21 H N N 205 LEU HD22 H N N 206 LEU HD23 H N N 207 LEU HXT H N N 208 LYS N N N N 209 LYS CA C N S 210 LYS C C N N 211 LYS O O N N 212 LYS CB C N N 213 LYS CG C N N 214 LYS CD C N N 215 LYS CE C N N 216 LYS NZ N N N 217 LYS OXT O N N 218 LYS H H N N 219 LYS H2 H N N 220 LYS HA H N N 221 LYS HB2 H N N 222 LYS HB3 H N N 223 LYS HG2 H N N 224 LYS HG3 H N N 225 LYS HD2 H N N 226 LYS HD3 H N N 227 LYS HE2 H N N 228 LYS HE3 H N N 229 LYS HZ1 H N N 230 LYS HZ2 H N N 231 LYS HZ3 H N N 232 LYS HXT H N N 233 MET N N N N 234 MET CA C N S 235 MET C C N N 236 MET O O N N 237 MET CB C N N 238 MET CG C N N 239 MET SD S N N 240 MET CE C N N 241 MET OXT O N N 242 MET H H N N 243 MET H2 H N N 244 MET HA H N N 245 MET HB2 H N N 246 MET HB3 H N N 247 MET HG2 H N N 248 MET HG3 H N N 249 MET HE1 H N N 250 MET HE2 H N N 251 MET HE3 H N N 252 MET HXT H N N 253 PHE N N N N 254 PHE CA C N S 255 PHE C C N N 256 PHE O O N N 257 PHE CB C N N 258 PHE CG C Y N 259 PHE CD1 C Y N 260 PHE CD2 C Y N 261 PHE CE1 C Y N 262 PHE CE2 C Y N 263 PHE CZ C Y N 264 PHE OXT O N N 265 PHE H H N N 266 PHE H2 H N N 267 PHE HA H N N 268 PHE HB2 H N N 269 PHE HB3 H N N 270 PHE HD1 H N N 271 PHE HD2 H N N 272 PHE HE1 H N N 273 PHE HE2 H N N 274 PHE HZ H N N 275 PHE HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TYR N N N N 308 TYR CA C N S 309 TYR C C N N 310 TYR O O N N 311 TYR CB C N N 312 TYR CG C Y N 313 TYR CD1 C Y N 314 TYR CD2 C Y N 315 TYR CE1 C Y N 316 TYR CE2 C Y N 317 TYR CZ C Y N 318 TYR OH O N N 319 TYR OXT O N N 320 TYR H H N N 321 TYR H2 H N N 322 TYR HA H N N 323 TYR HB2 H N N 324 TYR HB3 H N N 325 TYR HD1 H N N 326 TYR HD2 H N N 327 TYR HE1 H N N 328 TYR HE2 H N N 329 TYR HH H N N 330 TYR HXT H N N 331 VAL N N N N 332 VAL CA C N S 333 VAL C C N N 334 VAL O O N N 335 VAL CB C N N 336 VAL CG1 C N N 337 VAL CG2 C N N 338 VAL OXT O N N 339 VAL H H N N 340 VAL H2 H N N 341 VAL HA H N N 342 VAL HB H N N 343 VAL HG11 H N N 344 VAL HG12 H N N 345 VAL HG13 H N N 346 VAL HG21 H N N 347 VAL HG22 H N N 348 VAL HG23 H N N 349 VAL HXT H N N 350 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ZE C5 C4 sing N N 1 5ZE C4 C3 doub Y N 2 5ZE C4 N6 sing Y N 3 5ZE C3 C2 sing Y N 4 5ZE N6 C7 doub Y N 5 5ZE C2 C1 sing N N 6 5ZE C2 N9 doub Y N 7 5ZE C7 N9 sing Y N 8 5ZE C7 N8 sing N N 9 5ZE C1 H1 sing N N 10 5ZE C1 H2 sing N N 11 5ZE C1 H3 sing N N 12 5ZE C3 H4 sing N N 13 5ZE C5 H5 sing N N 14 5ZE C5 H6 sing N N 15 5ZE C5 H7 sing N N 16 5ZE N8 H8 sing N N 17 5ZE N8 H9 sing N N 18 ALA N CA sing N N 19 ALA N H sing N N 20 ALA N H2 sing N N 21 ALA CA C sing N N 22 ALA CA CB sing N N 23 ALA CA HA sing N N 24 ALA C O doub N N 25 ALA C OXT sing N N 26 ALA CB HB1 sing N N 27 ALA CB HB2 sing N N 28 ALA CB HB3 sing N N 29 ALA OXT HXT sing N N 30 ARG N CA sing N N 31 ARG N H sing N N 32 ARG N H2 sing N N 33 ARG CA C sing N N 34 ARG CA CB sing N N 35 ARG CA HA sing N N 36 ARG C O doub N N 37 ARG C OXT sing N N 38 ARG CB CG sing N N 39 ARG CB HB2 sing N N 40 ARG CB HB3 sing N N 41 ARG CG CD sing N N 42 ARG CG HG2 sing N N 43 ARG CG HG3 sing N N 44 ARG CD NE sing N N 45 ARG CD HD2 sing N N 46 ARG CD HD3 sing N N 47 ARG NE CZ sing N N 48 ARG NE HE sing N N 49 ARG CZ NH1 sing N N 50 ARG CZ NH2 doub N N 51 ARG NH1 HH11 sing N N 52 ARG NH1 HH12 sing N N 53 ARG NH2 HH21 sing N N 54 ARG NH2 HH22 sing N N 55 ARG OXT HXT sing N N 56 ASN N CA sing N N 57 ASN N H sing N N 58 ASN N H2 sing N N 59 ASN CA C sing N N 60 ASN CA CB sing N N 61 ASN CA HA sing N N 62 ASN C O doub N N 63 ASN C OXT sing N N 64 ASN CB CG sing N N 65 ASN CB HB2 sing N N 66 ASN CB HB3 sing N N 67 ASN CG OD1 doub N N 68 ASN CG ND2 sing N N 69 ASN ND2 HD21 sing N N 70 ASN ND2 HD22 sing N N 71 ASN OXT HXT sing N N 72 ASP N CA sing N N 73 ASP N H sing N N 74 ASP N H2 sing N N 75 ASP CA C sing N N 76 ASP CA CB sing N N 77 ASP CA HA sing N N 78 ASP C O doub N N 79 ASP C OXT sing N N 80 ASP CB CG sing N N 81 ASP CB HB2 sing N N 82 ASP CB HB3 sing N N 83 ASP CG OD1 doub N N 84 ASP CG OD2 sing N N 85 ASP OD2 HD2 sing N N 86 ASP OXT HXT sing N N 87 GLN N CA sing N N 88 GLN N H sing N N 89 GLN N H2 sing N N 90 GLN CA C sing N N 91 GLN CA CB sing N N 92 GLN CA HA sing N N 93 GLN C O doub N N 94 GLN C OXT sing N N 95 GLN CB CG sing N N 96 GLN CB HB2 sing N N 97 GLN CB HB3 sing N N 98 GLN CG CD sing N N 99 GLN CG HG2 sing N N 100 GLN CG HG3 sing N N 101 GLN CD OE1 doub N N 102 GLN CD NE2 sing N N 103 GLN NE2 HE21 sing N N 104 GLN NE2 HE22 sing N N 105 GLN OXT HXT sing N N 106 GLU N CA sing N N 107 GLU N H sing N N 108 GLU N H2 sing N N 109 GLU CA C sing N N 110 GLU CA CB sing N N 111 GLU CA HA sing N N 112 GLU C O doub N N 113 GLU C OXT sing N N 114 GLU CB CG sing N N 115 GLU CB HB2 sing N N 116 GLU CB HB3 sing N N 117 GLU CG CD sing N N 118 GLU CG HG2 sing N N 119 GLU CG HG3 sing N N 120 GLU CD OE1 doub N N 121 GLU CD OE2 sing N N 122 GLU OE2 HE2 sing N N 123 GLU OXT HXT sing N N 124 GLY N CA sing N N 125 GLY N H sing N N 126 GLY N H2 sing N N 127 GLY CA C sing N N 128 GLY CA HA2 sing N N 129 GLY CA HA3 sing N N 130 GLY C O doub N N 131 GLY C OXT sing N N 132 GLY OXT HXT sing N N 133 HIS N CA sing N N 134 HIS N H sing N N 135 HIS N H2 sing N N 136 HIS CA C sing N N 137 HIS CA CB sing N N 138 HIS CA HA sing N N 139 HIS C O doub N N 140 HIS C OXT sing N N 141 HIS CB CG sing N N 142 HIS CB HB2 sing N N 143 HIS CB HB3 sing N N 144 HIS CG ND1 sing Y N 145 HIS CG CD2 doub Y N 146 HIS ND1 CE1 doub Y N 147 HIS ND1 HD1 sing N N 148 HIS CD2 NE2 sing Y N 149 HIS CD2 HD2 sing N N 150 HIS CE1 NE2 sing Y N 151 HIS CE1 HE1 sing N N 152 HIS NE2 HE2 sing N N 153 HIS OXT HXT sing N N 154 HOH O H1 sing N N 155 HOH O H2 sing N N 156 ILE N CA sing N N 157 ILE N H sing N N 158 ILE N H2 sing N N 159 ILE CA C sing N N 160 ILE CA CB sing N N 161 ILE CA HA sing N N 162 ILE C O doub N N 163 ILE C OXT sing N N 164 ILE CB CG1 sing N N 165 ILE CB CG2 sing N N 166 ILE CB HB sing N N 167 ILE CG1 CD1 sing N N 168 ILE CG1 HG12 sing N N 169 ILE CG1 HG13 sing N N 170 ILE CG2 HG21 sing N N 171 ILE CG2 HG22 sing N N 172 ILE CG2 HG23 sing N N 173 ILE CD1 HD11 sing N N 174 ILE CD1 HD12 sing N N 175 ILE CD1 HD13 sing N N 176 ILE OXT HXT sing N N 177 LEU N CA sing N N 178 LEU N H sing N N 179 LEU N H2 sing N N 180 LEU CA C sing N N 181 LEU CA CB sing N N 182 LEU CA HA sing N N 183 LEU C O doub N N 184 LEU C OXT sing N N 185 LEU CB CG sing N N 186 LEU CB HB2 sing N N 187 LEU CB HB3 sing N N 188 LEU CG CD1 sing N N 189 LEU CG CD2 sing N N 190 LEU CG HG sing N N 191 LEU CD1 HD11 sing N N 192 LEU CD1 HD12 sing N N 193 LEU CD1 HD13 sing N N 194 LEU CD2 HD21 sing N N 195 LEU CD2 HD22 sing N N 196 LEU CD2 HD23 sing N N 197 LEU OXT HXT sing N N 198 LYS N CA sing N N 199 LYS N H sing N N 200 LYS N H2 sing N N 201 LYS CA C sing N N 202 LYS CA CB sing N N 203 LYS CA HA sing N N 204 LYS C O doub N N 205 LYS C OXT sing N N 206 LYS CB CG sing N N 207 LYS CB HB2 sing N N 208 LYS CB HB3 sing N N 209 LYS CG CD sing N N 210 LYS CG HG2 sing N N 211 LYS CG HG3 sing N N 212 LYS CD CE sing N N 213 LYS CD HD2 sing N N 214 LYS CD HD3 sing N N 215 LYS CE NZ sing N N 216 LYS CE HE2 sing N N 217 LYS CE HE3 sing N N 218 LYS NZ HZ1 sing N N 219 LYS NZ HZ2 sing N N 220 LYS NZ HZ3 sing N N 221 LYS OXT HXT sing N N 222 MET N CA sing N N 223 MET N H sing N N 224 MET N H2 sing N N 225 MET CA C sing N N 226 MET CA CB sing N N 227 MET CA HA sing N N 228 MET C O doub N N 229 MET C OXT sing N N 230 MET CB CG sing N N 231 MET CB HB2 sing N N 232 MET CB HB3 sing N N 233 MET CG SD sing N N 234 MET CG HG2 sing N N 235 MET CG HG3 sing N N 236 MET SD CE sing N N 237 MET CE HE1 sing N N 238 MET CE HE2 sing N N 239 MET CE HE3 sing N N 240 MET OXT HXT sing N N 241 PHE N CA sing N N 242 PHE N H sing N N 243 PHE N H2 sing N N 244 PHE CA C sing N N 245 PHE CA CB sing N N 246 PHE CA HA sing N N 247 PHE C O doub N N 248 PHE C OXT sing N N 249 PHE CB CG sing N N 250 PHE CB HB2 sing N N 251 PHE CB HB3 sing N N 252 PHE CG CD1 doub Y N 253 PHE CG CD2 sing Y N 254 PHE CD1 CE1 sing Y N 255 PHE CD1 HD1 sing N N 256 PHE CD2 CE2 doub Y N 257 PHE CD2 HD2 sing N N 258 PHE CE1 CZ doub Y N 259 PHE CE1 HE1 sing N N 260 PHE CE2 CZ sing Y N 261 PHE CE2 HE2 sing N N 262 PHE CZ HZ sing N N 263 PHE OXT HXT sing N N 264 SER N CA sing N N 265 SER N H sing N N 266 SER N H2 sing N N 267 SER CA C sing N N 268 SER CA CB sing N N 269 SER CA HA sing N N 270 SER C O doub N N 271 SER C OXT sing N N 272 SER CB OG sing N N 273 SER CB HB2 sing N N 274 SER CB HB3 sing N N 275 SER OG HG sing N N 276 SER OXT HXT sing N N 277 THR N CA sing N N 278 THR N H sing N N 279 THR N H2 sing N N 280 THR CA C sing N N 281 THR CA CB sing N N 282 THR CA HA sing N N 283 THR C O doub N N 284 THR C OXT sing N N 285 THR CB OG1 sing N N 286 THR CB CG2 sing N N 287 THR CB HB sing N N 288 THR OG1 HG1 sing N N 289 THR CG2 HG21 sing N N 290 THR CG2 HG22 sing N N 291 THR CG2 HG23 sing N N 292 THR OXT HXT sing N N 293 TYR N CA sing N N 294 TYR N H sing N N 295 TYR N H2 sing N N 296 TYR CA C sing N N 297 TYR CA CB sing N N 298 TYR CA HA sing N N 299 TYR C O doub N N 300 TYR C OXT sing N N 301 TYR CB CG sing N N 302 TYR CB HB2 sing N N 303 TYR CB HB3 sing N N 304 TYR CG CD1 doub Y N 305 TYR CG CD2 sing Y N 306 TYR CD1 CE1 sing Y N 307 TYR CD1 HD1 sing N N 308 TYR CD2 CE2 doub Y N 309 TYR CD2 HD2 sing N N 310 TYR CE1 CZ doub Y N 311 TYR CE1 HE1 sing N N 312 TYR CE2 CZ sing Y N 313 TYR CE2 HE2 sing N N 314 TYR CZ OH sing N N 315 TYR OH HH sing N N 316 TYR OXT HXT sing N N 317 VAL N CA sing N N 318 VAL N H sing N N 319 VAL N H2 sing N N 320 VAL CA C sing N N 321 VAL CA CB sing N N 322 VAL CA HA sing N N 323 VAL C O doub N N 324 VAL C OXT sing N N 325 VAL CB CG1 sing N N 326 VAL CB CG2 sing N N 327 VAL CB HB sing N N 328 VAL CG1 HG11 sing N N 329 VAL CG1 HG12 sing N N 330 VAL CG1 HG13 sing N N 331 VAL CG2 HG21 sing N N 332 VAL CG2 HG22 sing N N 333 VAL CG2 HG23 sing N N 334 VAL OXT HXT sing N N 335 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM145238 _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of ABLE fragment screen - Enamine Essential fragment library' _pdbx_deposit_group.group_description 'ABLE in complex with fragments identified by X-ray diffraction using ALS 8.3.1, SSRL 12-1 and SSRL 12-2' _pdbx_deposit_group.group_type 'changed state' _pdbx_deposit_group.group_id G_1002315 # _atom_sites.entry_id 7HJM _atom_sites.fract_transf_matrix[1][1] 0.038444 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008875 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021256 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022095 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ #