HEADER VIRAL PROTEIN 06-MAR-25 7I2S TITLE GROUP DEPOSITION FOR CRYSTALLOGRAPHIC FRAGMENT SCREENING OF THE NS5 TITLE 2 RNA-DEPENDENT RNA POLYMERASE FROM DENGUE VIRUS SEROTYPE 2 -- CRYSTAL TITLE 3 STRUCTURE OF THE NS5 RNA-DEPENDENT RNA POLYMERASE FROM DENGUE VIRUS TITLE 4 SEROTYPE 2 IN COMPLEX WITH Z31721798 (DNV2_NS5A-X0771) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS5 RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 2; SOURCE 3 ORGANISM_TAXID: 11060; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIAMOND LIGHT SOURCE, I04-1, READDI, DENGUE VIRUS, CRYSTALLOGRAPHIC KEYWDS 2 FRAGMENT SCREENING, PANDDA, XCHEMEXPLORER, CLUSTER4X, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.C.ASCHENBRENNER,M.SAINI,A.CHOPRA,P.G.MARPLES,B.H.BALCOMB, AUTHOR 2 R.M.LITHGO,D.FEARON,F.VON DELFT,F.X.RUIZ,E.ARNOLD REVDAT 1 02-APR-25 7I2S 0 JRNL AUTH J.C.ASCHENBRENNER,M.SAINI,A.CHOPRA,P.G.MARPLES,B.H.BALCOMB, JRNL AUTH 2 R.M.LITHGO,D.FEARON,F.VON DELFT,F.X.RUIZ,E.ARNOLD JRNL TITL GROUP DEPOSITION FOR CRYSTALLOGRAPHIC FRAGMENT SCREENING OF JRNL TITL 2 THE NS5 RNA-DEPENDENT RNA POLYMERASE FROM DENGUE VIRUS JRNL TITL 3 SEROTYPE 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 96204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5160 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.4330 REMARK 3 BIN FREE R VALUE SET COUNT : 364 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 419 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : 1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.353 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9503 ; 0.008 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 7163 ; 0.001 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10322 ; 1.434 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16583 ; 1.271 ; 1.602 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 977 ; 6.226 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 436 ;28.860 ;20.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1418 ;15.909 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 80 ;17.806 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 938 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8915 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1921 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4591 ; 2.659 ; 4.968 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4493 ; 2.681 ; 4.968 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4691 ; 4.664 ; 7.060 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4692 ; 4.663 ; 7.060 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4910 ; 3.034 ; 5.672 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4910 ; 3.034 ; 5.672 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5628 ; 5.042 ; 7.974 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7902 ;11.187 ;44.531 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7788 ;11.158 ;44.208 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7I2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1001408243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.92124 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 49.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 3.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 350 MM MAGNESIUM CHLORIDE, 10% PEG REMARK 280 4000, 100 MM MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.21950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.33350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.40700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.21950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.33350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.40700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.21950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.33350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.40700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.21950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.33350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.40700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1234 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1248 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1429 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1485 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 264 REMARK 465 PRO A 265 REMARK 465 GLY A 266 REMARK 465 ILE A 267 REMARK 465 GLU A 268 REMARK 465 SER A 269 REMARK 465 GLU A 270 REMARK 465 THR A 271 REMARK 465 PRO A 272 REMARK 465 GLY A 315 REMARK 465 SER A 316 REMARK 465 ASP A 345 REMARK 465 THR A 346 REMARK 465 THR A 347 REMARK 465 PRO A 348 REMARK 465 PHE A 349 REMARK 465 GLY A 350 REMARK 465 GLN A 351 REMARK 465 GLN A 352 REMARK 465 ARG A 353 REMARK 465 VAL A 354 REMARK 465 PHE A 355 REMARK 465 PHE A 413 REMARK 465 THR A 414 REMARK 465 ASP A 415 REMARK 465 GLU A 416 REMARK 465 ASN A 417 REMARK 465 LYS A 418 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 ARG A 458 REMARK 465 GLU A 459 REMARK 465 LYS A 460 REMARK 465 LYS A 461 REMARK 465 LEU A 462 REMARK 465 GLY A 463 REMARK 465 GLU A 464 REMARK 465 PHE A 465 REMARK 465 GLY A 466 REMARK 465 LYS A 467 REMARK 465 ALA A 468 REMARK 465 LYS A 469 REMARK 465 GLY A 470 REMARK 465 SER A 471 REMARK 465 ARG A 472 REMARK 465 PRO A 585 REMARK 465 ARG A 586 REMARK 465 GLY A 587 REMARK 465 TRP A 795 REMARK 465 SER A 796 REMARK 465 ILE A 797 REMARK 465 HIS A 798 REMARK 465 GLU A 892 REMARK 465 GLU A 893 REMARK 465 GLU A 894 REMARK 465 GLU A 895 REMARK 465 ALA A 896 REMARK 465 GLY A 897 REMARK 465 VAL A 898 REMARK 465 LEU A 899 REMARK 465 TRP A 900 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 344 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 664 O4 PO4 A 1008 1.90 REMARK 500 OD1 ASP A 534 O4 PO4 A 1008 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1162 O HOH A 1162 2445 1.56 REMARK 500 O HOH A 1292 O HOH A 1415 2545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 293 128.23 -171.65 REMARK 500 ASP A 297 42.81 -96.80 REMARK 500 LYS A 312 97.86 -162.85 REMARK 500 GLN A 313 -178.53 -175.01 REMARK 500 ASN A 406 103.76 53.22 REMARK 500 LYS A 420 -82.63 -65.27 REMARK 500 LEU A 504 -39.08 69.64 REMARK 500 ASN A 575 86.37 -154.06 REMARK 500 GLN A 598 157.05 79.49 REMARK 500 HIS A 801 71.38 -102.69 REMARK 500 HIS A 801 69.30 -101.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1518 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1519 DISTANCE = 6.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 438 OE1 REMARK 620 2 HIS A 442 NE2 96.1 REMARK 620 3 CYS A 447 SG 122.0 118.2 REMARK 620 4 CYS A 450 SG 93.3 112.6 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 712 NE2 REMARK 620 2 HIS A 714 NE2 102.8 REMARK 620 3 CYS A 728 SG 104.2 109.2 REMARK 620 4 CYS A 847 SG 105.7 114.2 118.9 REMARK 620 N 1 2 3 DBREF 7I2S A 266 900 UNP Q91H74 Q91H74_9FLAV 2757 3391 SEQADV 7I2S GLY A 264 UNP Q91H74 EXPRESSION TAG SEQADV 7I2S PRO A 265 UNP Q91H74 EXPRESSION TAG SEQRES 1 A 637 GLY PRO GLY ILE GLU SER GLU THR PRO ASN LEU ASP ILE SEQRES 2 A 637 ILE GLY LYS ARG ILE GLU LYS ILE LYS GLN GLU HIS GLU SEQRES 3 A 637 THR SER TRP HIS TYR ASP GLN ASP HIS PRO TYR LYS THR SEQRES 4 A 637 TRP ALA TYR HIS GLY SER TYR GLU THR LYS GLN THR GLY SEQRES 5 A 637 SER ALA SER SER MET VAL ASN GLY VAL VAL ARG LEU LEU SEQRES 6 A 637 THR LYS PRO TRP ASP ILE ILE PRO MET VAL THR GLN MET SEQRES 7 A 637 ALA MET THR ASP THR THR PRO PHE GLY GLN GLN ARG VAL SEQRES 8 A 637 PHE LYS GLU LYS VAL ASP THR ARG THR GLN GLU PRO LYS SEQRES 9 A 637 GLU GLY THR LYS LYS LEU MET LYS ILE THR ALA GLU TRP SEQRES 10 A 637 LEU TRP LYS GLU LEU GLY LYS LYS LYS THR PRO ARG MET SEQRES 11 A 637 CYS THR ARG GLU GLU PHE THR ARG LYS VAL ARG SER ASN SEQRES 12 A 637 ALA ALA LEU GLY ALA ILE PHE THR ASP GLU ASN LYS TRP SEQRES 13 A 637 LYS SER ALA ARG GLU ALA VAL GLU ASP SER GLY PHE TRP SEQRES 14 A 637 GLU LEU VAL ASP LYS GLU ARG ASN LEU HIS LEU GLU GLY SEQRES 15 A 637 LYS CYS GLU THR CYS VAL TYR ASN MET MET GLY LYS ARG SEQRES 16 A 637 GLU LYS LYS LEU GLY GLU PHE GLY LYS ALA LYS GLY SER SEQRES 17 A 637 ARG ALA ILE TRP TYR MET TRP LEU GLY ALA ARG PHE LEU SEQRES 18 A 637 GLU PHE GLU ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP SEQRES 19 A 637 PHE SER ARG GLU ASN SER LEU SER GLY VAL GLU GLY GLU SEQRES 20 A 637 GLY LEU HIS LYS LEU GLY TYR ILE LEU ARG ASP VAL SER SEQRES 21 A 637 LYS LYS GLU GLY GLY ALA MET TYR ALA ASP ASP THR ALA SEQRES 22 A 637 GLY TRP ASP THR ARG ILE THR LEU GLU ASP LEU LYS ASN SEQRES 23 A 637 GLU GLU MET VAL THR ASN HIS MET GLU GLY GLU HIS LYS SEQRES 24 A 637 LYS LEU ALA GLU ALA ILE PHE LYS LEU THR TYR GLN ASN SEQRES 25 A 637 LYS VAL VAL ARG VAL GLN ARG PRO THR PRO ARG GLY THR SEQRES 26 A 637 VAL MET ASP ILE ILE SER ARG ARG ASP GLN ARG GLY SER SEQRES 27 A 637 GLY GLN VAL VAL THR TYR GLY LEU ASN THR PHE THR ASN SEQRES 28 A 637 MET GLU ALA GLN LEU ILE ARG GLN MET GLU GLY GLU GLY SEQRES 29 A 637 VAL PHE LYS SER ILE GLN HIS LEU THR VAL THR GLU GLU SEQRES 30 A 637 ILE ALA VAL LYS ASN TRP LEU VAL ARG VAL GLY ARG GLU SEQRES 31 A 637 ARG LEU SER ARG MET ALA ILE SER GLY ASP ASP CYS VAL SEQRES 32 A 637 VAL LYS PRO LEU ASP ASP ARG PHE ALA SER ALA LEU THR SEQRES 33 A 637 ALA LEU ASN ASP MET GLY LYS VAL ARG LYS ASP ILE GLN SEQRES 34 A 637 GLN TRP GLU PRO SER ARG GLY TRP ASN ASP TRP THR GLN SEQRES 35 A 637 VAL PRO PHE CYS SER HIS HIS PHE HIS GLU LEU ILE MET SEQRES 36 A 637 LYS ASP GLY ARG VAL LEU VAL VAL PRO CYS ARG ASN GLN SEQRES 37 A 637 ASP GLU LEU ILE GLY ARG ALA ARG ILE SER GLN GLY ALA SEQRES 38 A 637 GLY TRP SER LEU ARG GLU THR ALA CYS LEU GLY LYS SER SEQRES 39 A 637 TYR ALA GLN MET TRP SER LEU MET TYR PHE HIS ARG ARG SEQRES 40 A 637 ASP LEU ARG LEU ALA ALA ASN ALA ILE CYS SER ALA VAL SEQRES 41 A 637 PRO SER HIS TRP VAL PRO THR SER ARG THR THR TRP SER SEQRES 42 A 637 ILE HIS ALA THR HIS GLU TRP MET THR THR GLU ASP MET SEQRES 43 A 637 LEU THR VAL TRP ASN ARG VAL TRP ILE GLN GLU ASN PRO SEQRES 44 A 637 TRP MET GLU ASP LYS THR PRO VAL GLU SER TRP GLU GLU SEQRES 45 A 637 ILE PRO TYR LEU GLY LYS ARG GLU ASP GLN TRP CYS GLY SEQRES 46 A 637 SER LEU ILE GLY LEU THR SER ARG ALA THR TRP ALA LYS SEQRES 47 A 637 ASN ILE GLN THR ALA ILE ASN GLN VAL ARG SER LEU ILE SEQRES 48 A 637 GLY ASN GLU GLU TYR THR ASP TYR MET PRO SER MET LYS SEQRES 49 A 637 ARG PHE ARG ARG GLU GLU GLU GLU ALA GLY VAL LEU TRP HET ZN A1001 1 HET ZN A1002 1 HET MES A1003 24 HET DMS A1004 4 HET DMS A1005 4 HET DMS A1006 4 HET PEG A1007 7 HET PO4 A1008 5 HET PO4 A1009 5 HET PEG A1010 7 HET NW4 A1011 16 HET CL A1012 1 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PO4 PHOSPHATE ION HETNAM NW4 3-CYCLOHEXYL-1-(MORPHOLIN-4-YL)PROPAN-1-ONE HETNAM CL CHLORIDE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 MES C6 H13 N O4 S FORMUL 5 DMS 3(C2 H6 O S) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 9 PO4 2(O4 P 3-) FORMUL 12 NW4 C13 H23 N O2 FORMUL 13 CL CL 1- FORMUL 14 HOH *419(H2 O) HELIX 1 AA1 ASN A 273 HIS A 288 1 16 HELIX 2 AA2 ASN A 322 LEU A 328 1 7 HELIX 3 AA3 THR A 329 ILE A 334 5 6 HELIX 4 AA4 ILE A 335 GLN A 340 1 6 HELIX 5 AA5 MET A 341 MET A 343 5 3 HELIX 6 AA6 LYS A 367 LYS A 387 1 21 HELIX 7 AA7 THR A 395 ARG A 404 1 10 HELIX 8 AA8 SER A 421 ASP A 428 1 8 HELIX 9 AA9 ASP A 428 GLU A 444 1 17 HELIX 10 AB1 TRP A 478 GLY A 490 1 13 HELIX 11 AB2 GLY A 490 ASP A 495 1 6 HELIX 12 AB3 SER A 499 LEU A 504 1 6 HELIX 13 AB4 GLY A 511 LYS A 524 1 14 HELIX 14 AB5 GLY A 537 ILE A 542 5 6 HELIX 15 AB6 THR A 543 MET A 552 1 10 HELIX 16 AB7 VAL A 553 MET A 557 5 5 HELIX 17 AB8 GLU A 558 TYR A 573 1 16 HELIX 18 AB9 GLY A 602 GLU A 626 1 25 HELIX 19 AC1 THR A 636 ARG A 657 1 22 HELIX 20 AC2 ASP A 671 ALA A 677 5 7 HELIX 21 AC3 LEU A 678 MET A 684 1 7 HELIX 22 AC4 ASP A 702 VAL A 706 5 5 HELIX 23 AC5 ASN A 730 ARG A 739 1 10 HELIX 24 AC6 SER A 747 TYR A 766 1 20 HELIX 25 AC7 ARG A 769 VAL A 783 1 15 HELIX 26 AC8 ASP A 808 ILE A 818 1 11 HELIX 27 AC9 SER A 832 ILE A 836 5 5 HELIX 28 AD1 GLY A 840 CYS A 847 1 8 HELIX 29 AD2 LEU A 853 ASN A 862 1 10 HELIX 30 AD3 ASN A 862 GLY A 875 1 14 HELIX 31 AD4 TYR A 882 ARG A 890 5 9 SHEET 1 AA1 4 ALA A 304 GLU A 310 0 SHEET 2 AA1 4 VAL A 589 ARG A 595 -1 O MET A 590 N TYR A 309 SHEET 3 AA1 4 LYS A 576 ARG A 582 -1 N VAL A 578 O ILE A 593 SHEET 4 AA1 4 TYR A 452 ASN A 453 1 N TYR A 452 O VAL A 577 SHEET 1 AA2 2 MET A 320 VAL A 321 0 SHEET 2 AA2 2 ILE A 740 SER A 741 -1 O SER A 741 N MET A 320 SHEET 1 AA3 2 MET A 658 SER A 661 0 SHEET 2 AA3 2 ASP A 664 VAL A 667 -1 O ASP A 664 N SER A 661 SHEET 1 AA4 2 HIS A 712 ILE A 717 0 SHEET 2 AA4 2 VAL A 723 CYS A 728 -1 O LEU A 724 N LEU A 716 LINK OE1 GLU A 438 ZN ZN A1002 1555 1555 2.15 LINK NE2 HIS A 442 ZN ZN A1002 1555 1555 2.13 LINK SG CYS A 447 ZN ZN A1002 1555 1555 2.19 LINK SG CYS A 450 ZN ZN A1002 1555 1555 2.19 LINK NE2 HIS A 712 ZN ZN A1001 1555 1555 2.11 LINK NE2 HIS A 714 ZN ZN A1001 1555 1555 2.06 LINK SG CYS A 728 ZN ZN A1001 1555 1555 2.32 LINK SG CYS A 847 ZN ZN A1001 1555 1555 2.30 CRYST1 82.439 116.667 148.814 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012130 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006720 0.00000