data_7IBH # _entry.id 7IBH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7IBH pdb_00007ibh 10.2210/pdb7ibh/pdb WWPDB D_1001408556 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-10-22 ? 2 'Structure model' 1 1 2025-12-10 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'Residues LEU A 46 and LYS A 47 that are next to each other in the sample sequence are not properly linked in conformers C and D.' 2 'Residues LYS A 47 and ASP A 48 that are next to each other in the sample sequence are not properly linked in conformers C and D.' # _pdbx_database_status.entry_id 7IBH _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2025-05-27 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 2 _pdbx_contact_author.name_last Weiss _pdbx_contact_author.name_first Manfred _pdbx_contact_author.name_mi S. _pdbx_contact_author.email manfred.weiss@helmholtz-berlin.de _pdbx_contact_author.identifier_ORCID 0000-0002-2362-7047 _pdbx_contact_author.role 'principal investigator/group leader' # loop_ _audit_author.pdbx_ordinal _audit_author.name _audit_author.identifier_ORCID 1 'Lennartz, F.' 0000-0001-5617-5502 2 'Weiss, M.S.' 0000-0002-2362-7047 # _citation.id primary _citation.title ;Crystallographic fragment screening against SARS-CoV-2 nonstructural protein 1 using the F2X-Entry Screen and a newly developed fragment library. ; _citation.journal_abbrev 'Acta Crystallogr D Struct Biol' _citation.journal_volume 81 _citation.page_first 630 _citation.page_last 645 _citation.year 2025 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN 2059-7983 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 41081353 _citation.pdbx_database_id_DOI 10.1107/S2059798325008563 # loop_ _citation_author.ordinal _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID 1 primary 'Lennartz, F.' ? 2 primary 'Wollenhaupt, J.' 0000-0002-3418-5213 3 primary 'Oelker, M.' 0000-0001-7301-8445 4 primary 'Froling, P.' ? 5 primary 'Mueller, U.' 0000-0002-7139-0718 6 primary 'Deckers, A.' ? 7 primary 'Grathwol, C.' ? 8 primary 'Brase, S.' ? 9 primary 'Jung, N.' 0000-0001-9513-2468 10 primary 'Weiss, M.S.' 0000-0002-2362-7047 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Host translation inhibitor nsp1' 12863.854 1 ? ? ? ? 2 non-polymer syn '(4-bromanyl-5-methyl-thiophen-2-yl)-oxidanyl-oxidanylidene-boron' 219.872 1 ? ? ? ? 3 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Leader protein,Non-structural protein 1,nsp1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELV AELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRK ; _entity_poly.pdbx_seq_one_letter_code_can ;EKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELV AELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4-bromanyl-5-methyl-thiophen-2-yl)-oxidanyl-oxidanylidene-boron' A1CS4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LYS n 1 3 THR n 1 4 HIS n 1 5 VAL n 1 6 GLN n 1 7 LEU n 1 8 SER n 1 9 LEU n 1 10 PRO n 1 11 VAL n 1 12 LEU n 1 13 GLN n 1 14 VAL n 1 15 ARG n 1 16 ASP n 1 17 VAL n 1 18 LEU n 1 19 VAL n 1 20 ARG n 1 21 GLY n 1 22 PHE n 1 23 GLY n 1 24 ASP n 1 25 SER n 1 26 VAL n 1 27 GLU n 1 28 GLU n 1 29 VAL n 1 30 LEU n 1 31 SER n 1 32 GLU n 1 33 ALA n 1 34 ARG n 1 35 GLN n 1 36 HIS n 1 37 LEU n 1 38 LYS n 1 39 ASP n 1 40 GLY n 1 41 THR n 1 42 CYS n 1 43 GLY n 1 44 LEU n 1 45 VAL n 1 46 GLU n 1 47 VAL n 1 48 GLU n 1 49 LYS n 1 50 GLY n 1 51 VAL n 1 52 LEU n 1 53 PRO n 1 54 GLN n 1 55 LEU n 1 56 GLU n 1 57 GLN n 1 58 PRO n 1 59 TYR n 1 60 VAL n 1 61 PHE n 1 62 ILE n 1 63 LYS n 1 64 ARG n 1 65 SER n 1 66 ASP n 1 67 ALA n 1 68 ARG n 1 69 THR n 1 70 ALA n 1 71 PRO n 1 72 HIS n 1 73 GLY n 1 74 HIS n 1 75 VAL n 1 76 MET n 1 77 VAL n 1 78 GLU n 1 79 LEU n 1 80 VAL n 1 81 ALA n 1 82 GLU n 1 83 LEU n 1 84 GLU n 1 85 GLY n 1 86 ILE n 1 87 GLN n 1 88 TYR n 1 89 GLY n 1 90 ARG n 1 91 SER n 1 92 GLY n 1 93 GLU n 1 94 THR n 1 95 LEU n 1 96 GLY n 1 97 VAL n 1 98 LEU n 1 99 VAL n 1 100 PRO n 1 101 HIS n 1 102 VAL n 1 103 GLY n 1 104 GLU n 1 105 ILE n 1 106 PRO n 1 107 VAL n 1 108 ALA n 1 109 TYR n 1 110 ARG n 1 111 LYS n 1 112 VAL n 1 113 LEU n 1 114 LEU n 1 115 ARG n 1 116 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 116 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1CS4 non-polymer . '(4-bromanyl-5-methyl-thiophen-2-yl)-oxidanyl-oxidanylidene-boron' ? 'C5 H5 B Br O2 S' 219.872 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 10 ? ? ? A . n A 1 2 LYS 2 11 11 LYS LYS A . n A 1 3 THR 3 12 12 THR THR A . n A 1 4 HIS 4 13 13 HIS HIS A . n A 1 5 VAL 5 14 14 VAL VAL A . n A 1 6 GLN 6 15 15 GLN GLN A . n A 1 7 LEU 7 16 16 LEU LEU A . n A 1 8 SER 8 17 17 SER SER A . n A 1 9 LEU 9 18 18 LEU LEU A . n A 1 10 PRO 10 19 19 PRO PRO A . n A 1 11 VAL 11 20 20 VAL VAL A . n A 1 12 LEU 12 21 21 LEU LEU A . n A 1 13 GLN 13 22 22 GLN GLN A . n A 1 14 VAL 14 23 23 VAL VAL A . n A 1 15 ARG 15 24 24 ARG ARG A . n A 1 16 ASP 16 25 25 ASP ASP A . n A 1 17 VAL 17 26 26 VAL VAL A . n A 1 18 LEU 18 27 27 LEU LEU A . n A 1 19 VAL 19 28 28 VAL VAL A . n A 1 20 ARG 20 29 29 ARG ARG A . n A 1 21 GLY 21 30 30 GLY GLY A . n A 1 22 PHE 22 31 31 PHE PHE A . n A 1 23 GLY 23 32 32 GLY GLY A . n A 1 24 ASP 24 33 33 ASP ASP A . n A 1 25 SER 25 34 34 SER SER A . n A 1 26 VAL 26 35 35 VAL VAL A . n A 1 27 GLU 27 36 36 GLU GLU A . n A 1 28 GLU 28 37 37 GLU GLU A . n A 1 29 VAL 29 38 38 VAL VAL A . n A 1 30 LEU 30 39 39 LEU LEU A . n A 1 31 SER 31 40 40 SER SER A . n A 1 32 GLU 32 41 41 GLU GLU A . n A 1 33 ALA 33 42 42 ALA ALA A . n A 1 34 ARG 34 43 43 ARG ARG A . n A 1 35 GLN 35 44 44 GLN GLN A . n A 1 36 HIS 36 45 45 HIS HIS A . n A 1 37 LEU 37 46 46 LEU LEU A . n A 1 38 LYS 38 47 47 LYS LYS A . n A 1 39 ASP 39 48 48 ASP ASP A . n A 1 40 GLY 40 49 49 GLY GLY A . n A 1 41 THR 41 50 50 THR THR A . n A 1 42 CYS 42 51 51 CYS CYS A . n A 1 43 GLY 43 52 52 GLY GLY A . n A 1 44 LEU 44 53 53 LEU LEU A . n A 1 45 VAL 45 54 54 VAL VAL A . n A 1 46 GLU 46 55 55 GLU GLU A . n A 1 47 VAL 47 56 56 VAL VAL A . n A 1 48 GLU 48 57 57 GLU GLU A . n A 1 49 LYS 49 58 58 LYS LYS A . n A 1 50 GLY 50 59 59 GLY GLY A . n A 1 51 VAL 51 60 60 VAL VAL A . n A 1 52 LEU 52 61 61 LEU LEU A . n A 1 53 PRO 53 62 62 PRO PRO A . n A 1 54 GLN 54 63 63 GLN GLN A . n A 1 55 LEU 55 64 64 LEU LEU A . n A 1 56 GLU 56 65 65 GLU GLU A . n A 1 57 GLN 57 66 66 GLN GLN A . n A 1 58 PRO 58 67 67 PRO PRO A . n A 1 59 TYR 59 68 68 TYR TYR A . n A 1 60 VAL 60 69 69 VAL VAL A . n A 1 61 PHE 61 70 70 PHE PHE A . n A 1 62 ILE 62 71 71 ILE ILE A . n A 1 63 LYS 63 72 72 LYS LYS A . n A 1 64 ARG 64 73 73 ARG ARG A . n A 1 65 SER 65 74 74 SER SER A . n A 1 66 ASP 66 75 75 ASP ASP A . n A 1 67 ALA 67 76 76 ALA ALA A . n A 1 68 ARG 68 77 ? ? ? A . n A 1 69 THR 69 78 ? ? ? A . n A 1 70 ALA 70 79 79 ALA ALA A . n A 1 71 PRO 71 80 80 PRO PRO A . n A 1 72 HIS 72 81 81 HIS HIS A . n A 1 73 GLY 73 82 82 GLY GLY A . n A 1 74 HIS 74 83 83 HIS HIS A . n A 1 75 VAL 75 84 84 VAL VAL A . n A 1 76 MET 76 85 85 MET MET A . n A 1 77 VAL 77 86 86 VAL VAL A . n A 1 78 GLU 78 87 87 GLU GLU A . n A 1 79 LEU 79 88 88 LEU LEU A . n A 1 80 VAL 80 89 89 VAL VAL A . n A 1 81 ALA 81 90 90 ALA ALA A . n A 1 82 GLU 82 91 91 GLU GLU A . n A 1 83 LEU 83 92 92 LEU LEU A . n A 1 84 GLU 84 93 93 GLU GLU A . n A 1 85 GLY 85 94 94 GLY GLY A . n A 1 86 ILE 86 95 95 ILE ILE A . n A 1 87 GLN 87 96 96 GLN GLN A . n A 1 88 TYR 88 97 97 TYR TYR A . n A 1 89 GLY 89 98 98 GLY GLY A . n A 1 90 ARG 90 99 99 ARG ARG A . n A 1 91 SER 91 100 100 SER SER A . n A 1 92 GLY 92 101 101 GLY GLY A . n A 1 93 GLU 93 102 102 GLU GLU A . n A 1 94 THR 94 103 103 THR THR A . n A 1 95 LEU 95 104 104 LEU LEU A . n A 1 96 GLY 96 105 105 GLY GLY A . n A 1 97 VAL 97 106 106 VAL VAL A . n A 1 98 LEU 98 107 107 LEU LEU A . n A 1 99 VAL 99 108 108 VAL VAL A . n A 1 100 PRO 100 109 109 PRO PRO A . n A 1 101 HIS 101 110 110 HIS HIS A . n A 1 102 VAL 102 111 111 VAL VAL A . n A 1 103 GLY 103 112 112 GLY GLY A . n A 1 104 GLU 104 113 113 GLU GLU A . n A 1 105 ILE 105 114 114 ILE ILE A . n A 1 106 PRO 106 115 115 PRO PRO A . n A 1 107 VAL 107 116 116 VAL VAL A . n A 1 108 ALA 108 117 117 ALA ALA A . n A 1 109 TYR 109 118 118 TYR TYR A . n A 1 110 ARG 110 119 119 ARG ARG A . n A 1 111 LYS 111 120 120 LYS LYS A . n A 1 112 VAL 112 121 121 VAL VAL A . n A 1 113 LEU 113 122 122 LEU LEU A . n A 1 114 LEU 114 123 123 LEU LEU A . n A 1 115 ARG 115 124 124 ARG ARG A . n A 1 116 LYS 116 125 125 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1CS4 1 201 210 A1CS4 LIG A . C 3 HOH 1 301 26 HOH HOH A . C 3 HOH 2 302 28 HOH HOH A . C 3 HOH 3 303 68 HOH HOH A . C 3 HOH 4 304 21 HOH HOH A . C 3 HOH 5 305 14 HOH HOH A . C 3 HOH 6 306 19 HOH HOH A . C 3 HOH 7 307 23 HOH HOH A . C 3 HOH 8 308 71 HOH HOH A . C 3 HOH 9 309 80 HOH HOH A . C 3 HOH 10 310 44 HOH HOH A . C 3 HOH 11 311 42 HOH HOH A . C 3 HOH 12 312 37 HOH HOH A . C 3 HOH 13 313 81 HOH HOH A . C 3 HOH 14 314 72 HOH HOH A . C 3 HOH 15 315 74 HOH HOH A . C 3 HOH 16 316 73 HOH HOH A . C 3 HOH 17 317 43 HOH HOH A . C 3 HOH 18 318 64 HOH HOH A . C 3 HOH 19 319 9 HOH HOH A . C 3 HOH 20 320 40 HOH HOH A . C 3 HOH 21 321 77 HOH HOH A . C 3 HOH 22 322 12 HOH HOH A . C 3 HOH 23 323 16 HOH HOH A . C 3 HOH 24 324 2 HOH HOH A . C 3 HOH 25 325 46 HOH HOH A . C 3 HOH 26 326 79 HOH HOH A . C 3 HOH 27 327 7 HOH HOH A . C 3 HOH 28 328 66 HOH HOH A . C 3 HOH 29 329 8 HOH HOH A . C 3 HOH 30 330 3 HOH HOH A . C 3 HOH 31 331 35 HOH HOH A . C 3 HOH 32 332 22 HOH HOH A . C 3 HOH 33 333 45 HOH HOH A . C 3 HOH 34 334 15 HOH HOH A . C 3 HOH 35 335 6 HOH HOH A . C 3 HOH 36 336 36 HOH HOH A . C 3 HOH 37 337 4 HOH HOH A . C 3 HOH 38 338 39 HOH HOH A . C 3 HOH 39 339 78 HOH HOH A . C 3 HOH 40 340 25 HOH HOH A . C 3 HOH 41 341 69 HOH HOH A . C 3 HOH 42 342 17 HOH HOH A . C 3 HOH 43 343 27 HOH HOH A . C 3 HOH 44 344 58 HOH HOH A . C 3 HOH 45 345 51 HOH HOH A . C 3 HOH 46 346 24 HOH HOH A . C 3 HOH 47 347 60 HOH HOH A . C 3 HOH 48 348 13 HOH HOH A . C 3 HOH 49 349 10 HOH HOH A . C 3 HOH 50 350 49 HOH HOH A . C 3 HOH 51 351 20 HOH HOH A . C 3 HOH 52 352 55 HOH HOH A . C 3 HOH 53 353 30 HOH HOH A . C 3 HOH 54 354 48 HOH HOH A . C 3 HOH 55 355 18 HOH HOH A . C 3 HOH 56 356 1 HOH HOH A . C 3 HOH 57 357 29 HOH HOH A . C 3 HOH 58 358 31 HOH HOH A . C 3 HOH 59 359 63 HOH HOH A . C 3 HOH 60 360 56 HOH HOH A . C 3 HOH 61 361 50 HOH HOH A . C 3 HOH 62 362 47 HOH HOH A . C 3 HOH 63 363 41 HOH HOH A . C 3 HOH 64 364 34 HOH HOH A . C 3 HOH 65 365 5 HOH HOH A . C 3 HOH 66 366 57 HOH HOH A . C 3 HOH 67 367 61 HOH HOH A . C 3 HOH 68 368 11 HOH HOH A . C 3 HOH 69 369 33 HOH HOH A . C 3 HOH 70 370 32 HOH HOH A . C 3 HOH 71 371 38 HOH HOH A . C 3 HOH 72 372 76 HOH HOH A . C 3 HOH 73 373 62 HOH HOH A . C 3 HOH 74 374 54 HOH HOH A . C 3 HOH 75 375 52 HOH HOH A . C 3 HOH 76 376 53 HOH HOH A . C 3 HOH 77 377 65 HOH HOH A . C 3 HOH 78 378 59 HOH HOH A . C 3 HOH 79 379 70 HOH HOH A . C 3 HOH 80 380 67 HOH HOH A . C 3 HOH 81 381 75 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 125 ? CG ? A LYS 116 CG 2 1 Y 1 A LYS 125 ? CD ? A LYS 116 CD 3 1 Y 1 A LYS 125 ? CE ? A LYS 116 CE 4 1 Y 1 A LYS 125 ? NZ ? A LYS 116 NZ # loop_ _software.classification _software.name _software.version _software.citation_id _software.pdbx_ordinal refinement REFMAC 5.8.0267 ? 1 phasing PHASER . ? 2 'data scaling' XDS . ? 3 'data reduction' XDS . ? 4 # _cell.entry_id 7IBH _cell.length_a 36.420 _cell.length_b 36.420 _cell.length_c 140.880 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7IBH _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 7IBH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.82 _exptl_crystal.density_percent_sol 32.41 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_details '0.1 M HEPES pH 7.5 and 25% (w/v) PEG 3350. Reproducibility was improved by seeding.' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.pdbx_collection_date 2023-05-02 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.pdbx_wavelength_list 0.9184 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7IBH _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.d_resolution_low 35.26 _reflns.d_resolution_high 2.03 _reflns.number_obs 6699 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.134 _reflns.pdbx_netI_over_sigmaI 12.17 _reflns.pdbx_Rrim_I_all 0.14 _reflns.pdbx_CC_half 0.9990000000000001 _reflns.pdbx_number_measured_all 81543 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_CC_half _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy 1 1 2.03 2.15 13379 1042 2.556 100.0 0.96 2.661 0.415 ? ? ? ? 1 2 2.15 2.3 12231 973 1.4169999999999998 99.9 1.77 1.476 0.679 ? ? ? ? 1 3 2.30 2.48 10720 911 0.991 99.9 2.48 1.036 0.8079999999999999 ? ? ? ? 1 4 2.48 2.72 11287 863 0.5820000000000001 100.0 4.47 0.606 0.948 ? ? ? ? 1 5 2.72 3.04 10026 797 0.322 100.0 7.93 0.336 0.983 ? ? ? ? 1 6 3.04 3.51 7798 689 0.138 100.0 16.32 0.145 0.996 ? ? ? ? 1 7 3.51 4.28 7473 614 0.067 99.8 32.61 0.07 0.9990000000000001 ? ? ? ? 1 8 4.28 6.01 5589 494 0.048 100.0 40.73 0.05 0.9990000000000001 ? ? ? ? 1 9 6.01 ? 3029 315 0.038 99.7 47.48 0.04 1.0 ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 7IBH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6364 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.26 _refine.ls_d_res_high 2.03 _refine.ls_percent_reflns_obs 99.94 _refine.ls_R_factor_obs 0.20923 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20479 _refine.ls_R_factor_R_free 0.29404 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 335 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.B_iso_mean 50.496 _refine.aniso_B[1][1] 0.51 _refine.aniso_B[2][2] 0.51 _refine.aniso_B[3][3] -1.02 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.502 _refine.pdbx_overall_ESU_R_Free 0.280 _refine.overall_SU_ML 0.229 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.953 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 873 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 964 _refine_hist.d_res_high 2.03 _refine_hist.d_res_low 35.26 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.014 ? 1558 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.017 ? 1282 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.398 1.651 ? 1764 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.168 1.603 ? 2952 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.496 5.000 ? 170 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 26.904 20.580 ? 69 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.652 15.000 ? 232 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.350 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.060 0.200 ? 156 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1507 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 293 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.525 4.974 ? 785 'X-RAY DIFFRACTION' ? r_mcbond_other 3.534 4.992 ? 781 'X-RAY DIFFRACTION' ? r_mcangle_it 5.455 7.404 ? 832 'X-RAY DIFFRACTION' ? r_mcangle_other 5.452 7.398 ? 833 'X-RAY DIFFRACTION' ? r_scbond_it 3.749 5.475 ? 773 'X-RAY DIFFRACTION' ? r_scbond_other 3.746 5.470 ? 774 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 6.409 7.989 ? 933 'X-RAY DIFFRACTION' ? r_long_range_B_refined 11.211 57.745 ? 1346 'X-RAY DIFFRACTION' ? r_long_range_B_other 11.207 57.714 ? 1347 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.031 _refine_ls_shell.d_res_low 2.083 _refine_ls_shell.number_reflns_R_work 440 _refine_ls_shell.R_factor_R_work 0.340 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 7IBH _struct.title 'PanDDA analysis group deposition -- SARS-CoV-2 Nsp1 in complex with fragment X6553 (well G10) from the KIT library' _struct.pdbx_CASP_flag N _struct.pdbx_model_details ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7IBH _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'SARS-CoV-2, fragment screen, Nsp1, KIT library, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELV AELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRK ; _struct_ref.pdbx_align_begin 10 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7IBH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0DTD1 _struct_ref_seq.db_align_beg 10 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 10 _struct_ref_seq.pdbx_auth_seq_align_end 125 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6390 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 13 ? VAL A 17 ? GLN A 22 VAL A 26 5 ? 5 HELX_P HELX_P2 AA2 SER A 25 ? GLY A 40 ? SER A 34 GLY A 49 1 ? 16 HELX_P HELX_P3 AA3 VAL A 51 ? LEU A 55 ? VAL A 60 LEU A 64 5 ? 5 HELX_P HELX_P4 AA4 ALA A 70 ? HIS A 74 ? ALA A 79 HIS A 83 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 57 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 66 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 58 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 67 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -8.33 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 86 ? TYR A 88 ? ILE A 95 TYR A 97 AA1 2 VAL A 75 ? LEU A 83 ? VAL A 84 LEU A 92 AA1 3 ALA A 108 ? ARG A 115 ? ALA A 117 ARG A 124 AA1 4 HIS A 4 ? VAL A 11 ? HIS A 13 VAL A 20 AA1 5 CYS A 42 ? VAL A 45 ? CYS A 51 VAL A 54 AA1 6 THR A 94 ? PRO A 100 ? THR A 103 PRO A 109 AA1 7 TYR A 59 ? ARG A 64 ? TYR A 68 ARG A 73 AA1 8 VAL A 75 ? LEU A 83 ? VAL A 84 LEU A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 88 ? O TYR A 97 N ALA A 81 ? N ALA A 90 AA1 2 3 N VAL A 77 ? N VAL A 86 O LEU A 113 ? O LEU A 122 AA1 3 4 O ALA A 108 ? O ALA A 117 N VAL A 11 ? N VAL A 20 AA1 4 5 N PRO A 10 ? N PRO A 19 O LEU A 44 ? O LEU A 53 AA1 5 6 N GLY A 43 ? N GLY A 52 O VAL A 99 ? O VAL A 108 AA1 6 7 O LEU A 98 ? O LEU A 107 N VAL A 60 ? N VAL A 69 AA1 7 8 N PHE A 61 ? N PHE A 70 O VAL A 80 ? O VAL A 89 # _pdbx_entry_details.entry_id 7IBH _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 117 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -170.05 _pdbx_validate_torsion.psi -179.21 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A LEU 46 ? C N A LYS 47 ? C 2.10 2 1 C A LEU 46 ? D N A LYS 47 ? D 2.11 3 1 C A LYS 47 ? C N A ASP 48 ? C 1.91 4 1 C A LYS 47 ? D N A ASP 48 ? D 1.91 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 310 ? C HOH . 2 1 A HOH 311 ? C HOH . 3 1 A HOH 380 ? C HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 10 ? A GLU 1 2 1 Y 1 A ARG 77 ? A ARG 68 3 1 Y 1 A THR 78 ? A THR 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1CS4 O01 O N N 1 A1CS4 B02 B N N 2 A1CS4 C03 C Y N 3 A1CS4 C04 C Y N 4 A1CS4 C05 C Y N 5 A1CS4 C06 C Y N 6 A1CS4 S07 S Y N 7 A1CS4 C08 C N N 8 A1CS4 BR9 BR N N 9 A1CS4 O10 O N N 10 A1CS4 H1 H N N 11 A1CS4 H2 H N N 12 A1CS4 H3 H N N 13 A1CS4 H4 H N N 14 A1CS4 H5 H N N 15 ALA N N N N 16 ALA CA C N S 17 ALA C C N N 18 ALA O O N N 19 ALA CB C N N 20 ALA OXT O N N 21 ALA H H N N 22 ALA H2 H N N 23 ALA HA H N N 24 ALA HB1 H N N 25 ALA HB2 H N N 26 ALA HB3 H N N 27 ALA HXT H N N 28 ARG N N N N 29 ARG CA C N S 30 ARG C C N N 31 ARG O O N N 32 ARG CB C N N 33 ARG CG C N N 34 ARG CD C N N 35 ARG NE N N N 36 ARG CZ C N N 37 ARG NH1 N N N 38 ARG NH2 N N N 39 ARG OXT O N N 40 ARG H H N N 41 ARG H2 H N N 42 ARG HA H N N 43 ARG HB2 H N N 44 ARG HB3 H N N 45 ARG HG2 H N N 46 ARG HG3 H N N 47 ARG HD2 H N N 48 ARG HD3 H N N 49 ARG HE H N N 50 ARG HH11 H N N 51 ARG HH12 H N N 52 ARG HH21 H N N 53 ARG HH22 H N N 54 ARG HXT H N N 55 ASP N N N N 56 ASP CA C N S 57 ASP C C N N 58 ASP O O N N 59 ASP CB C N N 60 ASP CG C N N 61 ASP OD1 O N N 62 ASP OD2 O N N 63 ASP OXT O N N 64 ASP H H N N 65 ASP H2 H N N 66 ASP HA H N N 67 ASP HB2 H N N 68 ASP HB3 H N N 69 ASP HD2 H N N 70 ASP HXT H N N 71 CYS N N N N 72 CYS CA C N R 73 CYS C C N N 74 CYS O O N N 75 CYS CB C N N 76 CYS SG S N N 77 CYS OXT O N N 78 CYS H H N N 79 CYS H2 H N N 80 CYS HA H N N 81 CYS HB2 H N N 82 CYS HB3 H N N 83 CYS HG H N N 84 CYS HXT H N N 85 GLN N N N N 86 GLN CA C N S 87 GLN C C N N 88 GLN O O N N 89 GLN CB C N N 90 GLN CG C N N 91 GLN CD C N N 92 GLN OE1 O N N 93 GLN NE2 N N N 94 GLN OXT O N N 95 GLN H H N N 96 GLN H2 H N N 97 GLN HA H N N 98 GLN HB2 H N N 99 GLN HB3 H N N 100 GLN HG2 H N N 101 GLN HG3 H N N 102 GLN HE21 H N N 103 GLN HE22 H N N 104 GLN HXT H N N 105 GLU N N N N 106 GLU CA C N S 107 GLU C C N N 108 GLU O O N N 109 GLU CB C N N 110 GLU CG C N N 111 GLU CD C N N 112 GLU OE1 O N N 113 GLU OE2 O N N 114 GLU OXT O N N 115 GLU H H N N 116 GLU H2 H N N 117 GLU HA H N N 118 GLU HB2 H N N 119 GLU HB3 H N N 120 GLU HG2 H N N 121 GLU HG3 H N N 122 GLU HE2 H N N 123 GLU HXT H N N 124 GLY N N N N 125 GLY CA C N N 126 GLY C C N N 127 GLY O O N N 128 GLY OXT O N N 129 GLY H H N N 130 GLY H2 H N N 131 GLY HA2 H N N 132 GLY HA3 H N N 133 GLY HXT H N N 134 HIS N N N N 135 HIS CA C N S 136 HIS C C N N 137 HIS O O N N 138 HIS CB C N N 139 HIS CG C Y N 140 HIS ND1 N Y N 141 HIS CD2 C Y N 142 HIS CE1 C Y N 143 HIS NE2 N Y N 144 HIS OXT O N N 145 HIS H H N N 146 HIS H2 H N N 147 HIS HA H N N 148 HIS HB2 H N N 149 HIS HB3 H N N 150 HIS HD1 H N N 151 HIS HD2 H N N 152 HIS HE1 H N N 153 HIS HE2 H N N 154 HIS HXT H N N 155 HOH O O N N 156 HOH H1 H N N 157 HOH H2 H N N 158 ILE N N N N 159 ILE CA C N S 160 ILE C C N N 161 ILE O O N N 162 ILE CB C N S 163 ILE CG1 C N N 164 ILE CG2 C N N 165 ILE CD1 C N N 166 ILE OXT O N N 167 ILE H H N N 168 ILE H2 H N N 169 ILE HA H N N 170 ILE HB H N N 171 ILE HG12 H N N 172 ILE HG13 H N N 173 ILE HG21 H N N 174 ILE HG22 H N N 175 ILE HG23 H N N 176 ILE HD11 H N N 177 ILE HD12 H N N 178 ILE HD13 H N N 179 ILE HXT H N N 180 LEU N N N N 181 LEU CA C N S 182 LEU C C N N 183 LEU O O N N 184 LEU CB C N N 185 LEU CG C N N 186 LEU CD1 C N N 187 LEU CD2 C N N 188 LEU OXT O N N 189 LEU H H N N 190 LEU H2 H N N 191 LEU HA H N N 192 LEU HB2 H N N 193 LEU HB3 H N N 194 LEU HG H N N 195 LEU HD11 H N N 196 LEU HD12 H N N 197 LEU HD13 H N N 198 LEU HD21 H N N 199 LEU HD22 H N N 200 LEU HD23 H N N 201 LEU HXT H N N 202 LYS N N N N 203 LYS CA C N S 204 LYS C C N N 205 LYS O O N N 206 LYS CB C N N 207 LYS CG C N N 208 LYS CD C N N 209 LYS CE C N N 210 LYS NZ N N N 211 LYS OXT O N N 212 LYS H H N N 213 LYS H2 H N N 214 LYS HA H N N 215 LYS HB2 H N N 216 LYS HB3 H N N 217 LYS HG2 H N N 218 LYS HG3 H N N 219 LYS HD2 H N N 220 LYS HD3 H N N 221 LYS HE2 H N N 222 LYS HE3 H N N 223 LYS HZ1 H N N 224 LYS HZ2 H N N 225 LYS HZ3 H N N 226 LYS HXT H N N 227 MET N N N N 228 MET CA C N S 229 MET C C N N 230 MET O O N N 231 MET CB C N N 232 MET CG C N N 233 MET SD S N N 234 MET CE C N N 235 MET OXT O N N 236 MET H H N N 237 MET H2 H N N 238 MET HA H N N 239 MET HB2 H N N 240 MET HB3 H N N 241 MET HG2 H N N 242 MET HG3 H N N 243 MET HE1 H N N 244 MET HE2 H N N 245 MET HE3 H N N 246 MET HXT H N N 247 PHE N N N N 248 PHE CA C N S 249 PHE C C N N 250 PHE O O N N 251 PHE CB C N N 252 PHE CG C Y N 253 PHE CD1 C Y N 254 PHE CD2 C Y N 255 PHE CE1 C Y N 256 PHE CE2 C Y N 257 PHE CZ C Y N 258 PHE OXT O N N 259 PHE H H N N 260 PHE H2 H N N 261 PHE HA H N N 262 PHE HB2 H N N 263 PHE HB3 H N N 264 PHE HD1 H N N 265 PHE HD2 H N N 266 PHE HE1 H N N 267 PHE HE2 H N N 268 PHE HZ H N N 269 PHE HXT H N N 270 PRO N N N N 271 PRO CA C N S 272 PRO C C N N 273 PRO O O N N 274 PRO CB C N N 275 PRO CG C N N 276 PRO CD C N N 277 PRO OXT O N N 278 PRO H H N N 279 PRO HA H N N 280 PRO HB2 H N N 281 PRO HB3 H N N 282 PRO HG2 H N N 283 PRO HG3 H N N 284 PRO HD2 H N N 285 PRO HD3 H N N 286 PRO HXT H N N 287 SER N N N N 288 SER CA C N S 289 SER C C N N 290 SER O O N N 291 SER CB C N N 292 SER OG O N N 293 SER OXT O N N 294 SER H H N N 295 SER H2 H N N 296 SER HA H N N 297 SER HB2 H N N 298 SER HB3 H N N 299 SER HG H N N 300 SER HXT H N N 301 THR N N N N 302 THR CA C N S 303 THR C C N N 304 THR O O N N 305 THR CB C N R 306 THR OG1 O N N 307 THR CG2 C N N 308 THR OXT O N N 309 THR H H N N 310 THR H2 H N N 311 THR HA H N N 312 THR HB H N N 313 THR HG1 H N N 314 THR HG21 H N N 315 THR HG22 H N N 316 THR HG23 H N N 317 THR HXT H N N 318 TYR N N N N 319 TYR CA C N S 320 TYR C C N N 321 TYR O O N N 322 TYR CB C N N 323 TYR CG C Y N 324 TYR CD1 C Y N 325 TYR CD2 C Y N 326 TYR CE1 C Y N 327 TYR CE2 C Y N 328 TYR CZ C Y N 329 TYR OH O N N 330 TYR OXT O N N 331 TYR H H N N 332 TYR H2 H N N 333 TYR HA H N N 334 TYR HB2 H N N 335 TYR HB3 H N N 336 TYR HD1 H N N 337 TYR HD2 H N N 338 TYR HE1 H N N 339 TYR HE2 H N N 340 TYR HH H N N 341 TYR HXT H N N 342 VAL N N N N 343 VAL CA C N S 344 VAL C C N N 345 VAL O O N N 346 VAL CB C N N 347 VAL CG1 C N N 348 VAL CG2 C N N 349 VAL OXT O N N 350 VAL H H N N 351 VAL H2 H N N 352 VAL HA H N N 353 VAL HB H N N 354 VAL HG11 H N N 355 VAL HG12 H N N 356 VAL HG13 H N N 357 VAL HG21 H N N 358 VAL HG22 H N N 359 VAL HG23 H N N 360 VAL HXT H N N 361 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CS4 BR9 C05 sing N N 1 A1CS4 O01 B02 doub N N 2 A1CS4 C04 C05 sing Y N 3 A1CS4 C04 C03 doub Y N 4 A1CS4 B02 O10 sing N N 5 A1CS4 B02 C03 sing N N 6 A1CS4 C05 C06 doub Y N 7 A1CS4 C03 S07 sing Y N 8 A1CS4 C06 S07 sing Y N 9 A1CS4 C06 C08 sing N N 10 A1CS4 C04 H1 sing N N 11 A1CS4 C08 H2 sing N N 12 A1CS4 C08 H3 sing N N 13 A1CS4 C08 H4 sing N N 14 A1CS4 O10 H5 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 ARG N CA sing N N 28 ARG N H sing N N 29 ARG N H2 sing N N 30 ARG CA C sing N N 31 ARG CA CB sing N N 32 ARG CA HA sing N N 33 ARG C O doub N N 34 ARG C OXT sing N N 35 ARG CB CG sing N N 36 ARG CB HB2 sing N N 37 ARG CB HB3 sing N N 38 ARG CG CD sing N N 39 ARG CG HG2 sing N N 40 ARG CG HG3 sing N N 41 ARG CD NE sing N N 42 ARG CD HD2 sing N N 43 ARG CD HD3 sing N N 44 ARG NE CZ sing N N 45 ARG NE HE sing N N 46 ARG CZ NH1 sing N N 47 ARG CZ NH2 doub N N 48 ARG NH1 HH11 sing N N 49 ARG NH1 HH12 sing N N 50 ARG NH2 HH21 sing N N 51 ARG NH2 HH22 sing N N 52 ARG OXT HXT sing N N 53 ASP N CA sing N N 54 ASP N H sing N N 55 ASP N H2 sing N N 56 ASP CA C sing N N 57 ASP CA CB sing N N 58 ASP CA HA sing N N 59 ASP C O doub N N 60 ASP C OXT sing N N 61 ASP CB CG sing N N 62 ASP CB HB2 sing N N 63 ASP CB HB3 sing N N 64 ASP CG OD1 doub N N 65 ASP CG OD2 sing N N 66 ASP OD2 HD2 sing N N 67 ASP OXT HXT sing N N 68 CYS N CA sing N N 69 CYS N H sing N N 70 CYS N H2 sing N N 71 CYS CA C sing N N 72 CYS CA CB sing N N 73 CYS CA HA sing N N 74 CYS C O doub N N 75 CYS C OXT sing N N 76 CYS CB SG sing N N 77 CYS CB HB2 sing N N 78 CYS CB HB3 sing N N 79 CYS SG HG sing N N 80 CYS OXT HXT sing N N 81 GLN N CA sing N N 82 GLN N H sing N N 83 GLN N H2 sing N N 84 GLN CA C sing N N 85 GLN CA CB sing N N 86 GLN CA HA sing N N 87 GLN C O doub N N 88 GLN C OXT sing N N 89 GLN CB CG sing N N 90 GLN CB HB2 sing N N 91 GLN CB HB3 sing N N 92 GLN CG CD sing N N 93 GLN CG HG2 sing N N 94 GLN CG HG3 sing N N 95 GLN CD OE1 doub N N 96 GLN CD NE2 sing N N 97 GLN NE2 HE21 sing N N 98 GLN NE2 HE22 sing N N 99 GLN OXT HXT sing N N 100 GLU N CA sing N N 101 GLU N H sing N N 102 GLU N H2 sing N N 103 GLU CA C sing N N 104 GLU CA CB sing N N 105 GLU CA HA sing N N 106 GLU C O doub N N 107 GLU C OXT sing N N 108 GLU CB CG sing N N 109 GLU CB HB2 sing N N 110 GLU CB HB3 sing N N 111 GLU CG CD sing N N 112 GLU CG HG2 sing N N 113 GLU CG HG3 sing N N 114 GLU CD OE1 doub N N 115 GLU CD OE2 sing N N 116 GLU OE2 HE2 sing N N 117 GLU OXT HXT sing N N 118 GLY N CA sing N N 119 GLY N H sing N N 120 GLY N H2 sing N N 121 GLY CA C sing N N 122 GLY CA HA2 sing N N 123 GLY CA HA3 sing N N 124 GLY C O doub N N 125 GLY C OXT sing N N 126 GLY OXT HXT sing N N 127 HIS N CA sing N N 128 HIS N H sing N N 129 HIS N H2 sing N N 130 HIS CA C sing N N 131 HIS CA CB sing N N 132 HIS CA HA sing N N 133 HIS C O doub N N 134 HIS C OXT sing N N 135 HIS CB CG sing N N 136 HIS CB HB2 sing N N 137 HIS CB HB3 sing N N 138 HIS CG ND1 sing Y N 139 HIS CG CD2 doub Y N 140 HIS ND1 CE1 doub Y N 141 HIS ND1 HD1 sing N N 142 HIS CD2 NE2 sing Y N 143 HIS CD2 HD2 sing N N 144 HIS CE1 NE2 sing Y N 145 HIS CE1 HE1 sing N N 146 HIS NE2 HE2 sing N N 147 HIS OXT HXT sing N N 148 HOH O H1 sing N N 149 HOH O H2 sing N N 150 ILE N CA sing N N 151 ILE N H sing N N 152 ILE N H2 sing N N 153 ILE CA C sing N N 154 ILE CA CB sing N N 155 ILE CA HA sing N N 156 ILE C O doub N N 157 ILE C OXT sing N N 158 ILE CB CG1 sing N N 159 ILE CB CG2 sing N N 160 ILE CB HB sing N N 161 ILE CG1 CD1 sing N N 162 ILE CG1 HG12 sing N N 163 ILE CG1 HG13 sing N N 164 ILE CG2 HG21 sing N N 165 ILE CG2 HG22 sing N N 166 ILE CG2 HG23 sing N N 167 ILE CD1 HD11 sing N N 168 ILE CD1 HD12 sing N N 169 ILE CD1 HD13 sing N N 170 ILE OXT HXT sing N N 171 LEU N CA sing N N 172 LEU N H sing N N 173 LEU N H2 sing N N 174 LEU CA C sing N N 175 LEU CA CB sing N N 176 LEU CA HA sing N N 177 LEU C O doub N N 178 LEU C OXT sing N N 179 LEU CB CG sing N N 180 LEU CB HB2 sing N N 181 LEU CB HB3 sing N N 182 LEU CG CD1 sing N N 183 LEU CG CD2 sing N N 184 LEU CG HG sing N N 185 LEU CD1 HD11 sing N N 186 LEU CD1 HD12 sing N N 187 LEU CD1 HD13 sing N N 188 LEU CD2 HD21 sing N N 189 LEU CD2 HD22 sing N N 190 LEU CD2 HD23 sing N N 191 LEU OXT HXT sing N N 192 LYS N CA sing N N 193 LYS N H sing N N 194 LYS N H2 sing N N 195 LYS CA C sing N N 196 LYS CA CB sing N N 197 LYS CA HA sing N N 198 LYS C O doub N N 199 LYS C OXT sing N N 200 LYS CB CG sing N N 201 LYS CB HB2 sing N N 202 LYS CB HB3 sing N N 203 LYS CG CD sing N N 204 LYS CG HG2 sing N N 205 LYS CG HG3 sing N N 206 LYS CD CE sing N N 207 LYS CD HD2 sing N N 208 LYS CD HD3 sing N N 209 LYS CE NZ sing N N 210 LYS CE HE2 sing N N 211 LYS CE HE3 sing N N 212 LYS NZ HZ1 sing N N 213 LYS NZ HZ2 sing N N 214 LYS NZ HZ3 sing N N 215 LYS OXT HXT sing N N 216 MET N CA sing N N 217 MET N H sing N N 218 MET N H2 sing N N 219 MET CA C sing N N 220 MET CA CB sing N N 221 MET CA HA sing N N 222 MET C O doub N N 223 MET C OXT sing N N 224 MET CB CG sing N N 225 MET CB HB2 sing N N 226 MET CB HB3 sing N N 227 MET CG SD sing N N 228 MET CG HG2 sing N N 229 MET CG HG3 sing N N 230 MET SD CE sing N N 231 MET CE HE1 sing N N 232 MET CE HE2 sing N N 233 MET CE HE3 sing N N 234 MET OXT HXT sing N N 235 PHE N CA sing N N 236 PHE N H sing N N 237 PHE N H2 sing N N 238 PHE CA C sing N N 239 PHE CA CB sing N N 240 PHE CA HA sing N N 241 PHE C O doub N N 242 PHE C OXT sing N N 243 PHE CB CG sing N N 244 PHE CB HB2 sing N N 245 PHE CB HB3 sing N N 246 PHE CG CD1 doub Y N 247 PHE CG CD2 sing Y N 248 PHE CD1 CE1 sing Y N 249 PHE CD1 HD1 sing N N 250 PHE CD2 CE2 doub Y N 251 PHE CD2 HD2 sing N N 252 PHE CE1 CZ doub Y N 253 PHE CE1 HE1 sing N N 254 PHE CE2 CZ sing Y N 255 PHE CE2 HE2 sing N N 256 PHE CZ HZ sing N N 257 PHE OXT HXT sing N N 258 PRO N CA sing N N 259 PRO N CD sing N N 260 PRO N H sing N N 261 PRO CA C sing N N 262 PRO CA CB sing N N 263 PRO CA HA sing N N 264 PRO C O doub N N 265 PRO C OXT sing N N 266 PRO CB CG sing N N 267 PRO CB HB2 sing N N 268 PRO CB HB3 sing N N 269 PRO CG CD sing N N 270 PRO CG HG2 sing N N 271 PRO CG HG3 sing N N 272 PRO CD HD2 sing N N 273 PRO CD HD3 sing N N 274 PRO OXT HXT sing N N 275 SER N CA sing N N 276 SER N H sing N N 277 SER N H2 sing N N 278 SER CA C sing N N 279 SER CA CB sing N N 280 SER CA HA sing N N 281 SER C O doub N N 282 SER C OXT sing N N 283 SER CB OG sing N N 284 SER CB HB2 sing N N 285 SER CB HB3 sing N N 286 SER OG HG sing N N 287 SER OXT HXT sing N N 288 THR N CA sing N N 289 THR N H sing N N 290 THR N H2 sing N N 291 THR CA C sing N N 292 THR CA CB sing N N 293 THR CA HA sing N N 294 THR C O doub N N 295 THR C OXT sing N N 296 THR CB OG1 sing N N 297 THR CB CG2 sing N N 298 THR CB HB sing N N 299 THR OG1 HG1 sing N N 300 THR CG2 HG21 sing N N 301 THR CG2 HG22 sing N N 302 THR CG2 HG23 sing N N 303 THR OXT HXT sing N N 304 TYR N CA sing N N 305 TYR N H sing N N 306 TYR N H2 sing N N 307 TYR CA C sing N N 308 TYR CA CB sing N N 309 TYR CA HA sing N N 310 TYR C O doub N N 311 TYR C OXT sing N N 312 TYR CB CG sing N N 313 TYR CB HB2 sing N N 314 TYR CB HB3 sing N N 315 TYR CG CD1 doub Y N 316 TYR CG CD2 sing Y N 317 TYR CD1 CE1 sing Y N 318 TYR CD1 HD1 sing N N 319 TYR CD2 CE2 doub Y N 320 TYR CD2 HD2 sing N N 321 TYR CE1 CZ doub Y N 322 TYR CE1 HE1 sing N N 323 TYR CE2 CZ sing Y N 324 TYR CE2 HE2 sing N N 325 TYR CZ OH sing N N 326 TYR OH HH sing N N 327 TYR OXT HXT sing N N 328 VAL N CA sing N N 329 VAL N H sing N N 330 VAL N H2 sing N N 331 VAL CA C sing N N 332 VAL CA CB sing N N 333 VAL CA HA sing N N 334 VAL C O doub N N 335 VAL C OXT sing N N 336 VAL CB CG1 sing N N 337 VAL CB CG2 sing N N 338 VAL CB HB sing N N 339 VAL CG1 HG11 sing N N 340 VAL CG1 HG12 sing N N 341 VAL CG1 HG13 sing N N 342 VAL CG2 HG21 sing N N 343 VAL CG2 HG22 sing N N 344 VAL CG2 HG23 sing N N 345 VAL OXT HXT sing N N 346 # _pdbx_audit_support.ordinal 1 _pdbx_audit_support.funding_organization 'Helmholtz Association' _pdbx_audit_support.country Germany # _pdbx_deposit_group.group_id G_1002337 _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of SARS-CoV-2 Nsp1 soaked with fragments from the KIT library' _pdbx_deposit_group.group_description ;SARS-CoV-2 Nsp1 soaked with Fragments from the KIT library. Includes refined models for hit compounds with ligands placed into the PanDDA event-map, which is the primary evidence for ligand placement. The event-, average and Z-maps and the 2Fo-Fc and Fo-Fc maps are included in the mmcif file. 2Fo-Fc and Fo-Fc maps are not useful to consider as evidence for ligand placement. ; _pdbx_deposit_group.group_type 'changed state' # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.accession_code 7EQ4 _pdbx_initial_refinement_model.source_name PDB # _atom_sites.entry_id 7IBH _atom_sites.fract_transf_matrix[1][1] 0.027457 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027457 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007098 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol B BR C N O S # loop_ #