data_7IBI # _entry.id 7IBI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7IBI pdb_00007ibi 10.2210/pdb7ibi/pdb WWPDB D_1001408557 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-10-22 ? 2 'Structure model' 1 1 2025-12-10 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'Residues LEU A 46 and LYS A 47 that are next to each other in the sample sequence are not properly linked in conformers C and D.' 2 'Residues LYS A 47 and ASP A 48 that are next to each other in the sample sequence are not properly linked in conformers C and D.' # _pdbx_database_status.entry_id 7IBI _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2025-05-27 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 2 _pdbx_contact_author.name_last Weiss _pdbx_contact_author.name_first Manfred _pdbx_contact_author.name_mi S. _pdbx_contact_author.email manfred.weiss@helmholtz-berlin.de _pdbx_contact_author.identifier_ORCID 0000-0002-2362-7047 _pdbx_contact_author.role 'principal investigator/group leader' # loop_ _audit_author.pdbx_ordinal _audit_author.name _audit_author.identifier_ORCID 1 'Lennartz, F.' 0000-0001-5617-5502 2 'Weiss, M.S.' 0000-0002-2362-7047 # _citation.id primary _citation.title ;Crystallographic fragment screening against SARS-CoV-2 nonstructural protein 1 using the F2X-Entry Screen and a newly developed fragment library. ; _citation.journal_abbrev 'Acta Crystallogr D Struct Biol' _citation.journal_volume 81 _citation.page_first 630 _citation.page_last 645 _citation.year 2025 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN 2059-7983 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 41081353 _citation.pdbx_database_id_DOI 10.1107/S2059798325008563 # loop_ _citation_author.ordinal _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID 1 primary 'Lennartz, F.' ? 2 primary 'Wollenhaupt, J.' 0000-0002-3418-5213 3 primary 'Oelker, M.' 0000-0001-7301-8445 4 primary 'Froling, P.' ? 5 primary 'Mueller, U.' 0000-0002-7139-0718 6 primary 'Deckers, A.' ? 7 primary 'Grathwol, C.' ? 8 primary 'Brase, S.' ? 9 primary 'Jung, N.' 0000-0001-9513-2468 10 primary 'Weiss, M.S.' 0000-0002-2362-7047 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Host translation inhibitor nsp1' 12863.854 1 ? ? ? ? 2 non-polymer syn "N,N'-(pyridine-2,6-diyl)diacetamide" 193.203 1 ? ? ? ? 3 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Leader protein,Non-structural protein 1,nsp1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELV AELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRK ; _entity_poly.pdbx_seq_one_letter_code_can ;EKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELV AELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "N,N'-(pyridine-2,6-diyl)diacetamide" A1CS5 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LYS n 1 3 THR n 1 4 HIS n 1 5 VAL n 1 6 GLN n 1 7 LEU n 1 8 SER n 1 9 LEU n 1 10 PRO n 1 11 VAL n 1 12 LEU n 1 13 GLN n 1 14 VAL n 1 15 ARG n 1 16 ASP n 1 17 VAL n 1 18 LEU n 1 19 VAL n 1 20 ARG n 1 21 GLY n 1 22 PHE n 1 23 GLY n 1 24 ASP n 1 25 SER n 1 26 VAL n 1 27 GLU n 1 28 GLU n 1 29 VAL n 1 30 LEU n 1 31 SER n 1 32 GLU n 1 33 ALA n 1 34 ARG n 1 35 GLN n 1 36 HIS n 1 37 LEU n 1 38 LYS n 1 39 ASP n 1 40 GLY n 1 41 THR n 1 42 CYS n 1 43 GLY n 1 44 LEU n 1 45 VAL n 1 46 GLU n 1 47 VAL n 1 48 GLU n 1 49 LYS n 1 50 GLY n 1 51 VAL n 1 52 LEU n 1 53 PRO n 1 54 GLN n 1 55 LEU n 1 56 GLU n 1 57 GLN n 1 58 PRO n 1 59 TYR n 1 60 VAL n 1 61 PHE n 1 62 ILE n 1 63 LYS n 1 64 ARG n 1 65 SER n 1 66 ASP n 1 67 ALA n 1 68 ARG n 1 69 THR n 1 70 ALA n 1 71 PRO n 1 72 HIS n 1 73 GLY n 1 74 HIS n 1 75 VAL n 1 76 MET n 1 77 VAL n 1 78 GLU n 1 79 LEU n 1 80 VAL n 1 81 ALA n 1 82 GLU n 1 83 LEU n 1 84 GLU n 1 85 GLY n 1 86 ILE n 1 87 GLN n 1 88 TYR n 1 89 GLY n 1 90 ARG n 1 91 SER n 1 92 GLY n 1 93 GLU n 1 94 THR n 1 95 LEU n 1 96 GLY n 1 97 VAL n 1 98 LEU n 1 99 VAL n 1 100 PRO n 1 101 HIS n 1 102 VAL n 1 103 GLY n 1 104 GLU n 1 105 ILE n 1 106 PRO n 1 107 VAL n 1 108 ALA n 1 109 TYR n 1 110 ARG n 1 111 LYS n 1 112 VAL n 1 113 LEU n 1 114 LEU n 1 115 ARG n 1 116 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 116 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1CS5 non-polymer . "N,N'-(pyridine-2,6-diyl)diacetamide" ? 'C9 H11 N3 O2' 193.203 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 10 ? ? ? A . n A 1 2 LYS 2 11 11 LYS LYS A . n A 1 3 THR 3 12 12 THR THR A . n A 1 4 HIS 4 13 13 HIS HIS A . n A 1 5 VAL 5 14 14 VAL VAL A . n A 1 6 GLN 6 15 15 GLN GLN A . n A 1 7 LEU 7 16 16 LEU LEU A . n A 1 8 SER 8 17 17 SER SER A . n A 1 9 LEU 9 18 18 LEU LEU A . n A 1 10 PRO 10 19 19 PRO PRO A . n A 1 11 VAL 11 20 20 VAL VAL A . n A 1 12 LEU 12 21 21 LEU LEU A . n A 1 13 GLN 13 22 22 GLN GLN A . n A 1 14 VAL 14 23 23 VAL VAL A . n A 1 15 ARG 15 24 24 ARG ARG A . n A 1 16 ASP 16 25 25 ASP ASP A . n A 1 17 VAL 17 26 26 VAL VAL A . n A 1 18 LEU 18 27 27 LEU LEU A . n A 1 19 VAL 19 28 28 VAL VAL A . n A 1 20 ARG 20 29 29 ARG ARG A . n A 1 21 GLY 21 30 30 GLY GLY A . n A 1 22 PHE 22 31 31 PHE PHE A . n A 1 23 GLY 23 32 32 GLY GLY A . n A 1 24 ASP 24 33 33 ASP ASP A . n A 1 25 SER 25 34 34 SER SER A . n A 1 26 VAL 26 35 35 VAL VAL A . n A 1 27 GLU 27 36 36 GLU GLU A . n A 1 28 GLU 28 37 37 GLU GLU A . n A 1 29 VAL 29 38 38 VAL VAL A . n A 1 30 LEU 30 39 39 LEU LEU A . n A 1 31 SER 31 40 40 SER SER A . n A 1 32 GLU 32 41 41 GLU GLU A . n A 1 33 ALA 33 42 42 ALA ALA A . n A 1 34 ARG 34 43 43 ARG ARG A . n A 1 35 GLN 35 44 44 GLN GLN A . n A 1 36 HIS 36 45 45 HIS HIS A . n A 1 37 LEU 37 46 46 LEU LEU A . n A 1 38 LYS 38 47 47 LYS LYS A . n A 1 39 ASP 39 48 48 ASP ASP A . n A 1 40 GLY 40 49 49 GLY GLY A . n A 1 41 THR 41 50 50 THR THR A . n A 1 42 CYS 42 51 51 CYS CYS A . n A 1 43 GLY 43 52 52 GLY GLY A . n A 1 44 LEU 44 53 53 LEU LEU A . n A 1 45 VAL 45 54 54 VAL VAL A . n A 1 46 GLU 46 55 55 GLU GLU A . n A 1 47 VAL 47 56 56 VAL VAL A . n A 1 48 GLU 48 57 57 GLU GLU A . n A 1 49 LYS 49 58 58 LYS LYS A . n A 1 50 GLY 50 59 59 GLY GLY A . n A 1 51 VAL 51 60 60 VAL VAL A . n A 1 52 LEU 52 61 61 LEU LEU A . n A 1 53 PRO 53 62 62 PRO PRO A . n A 1 54 GLN 54 63 63 GLN GLN A . n A 1 55 LEU 55 64 64 LEU LEU A . n A 1 56 GLU 56 65 65 GLU GLU A . n A 1 57 GLN 57 66 66 GLN GLN A . n A 1 58 PRO 58 67 67 PRO PRO A . n A 1 59 TYR 59 68 68 TYR TYR A . n A 1 60 VAL 60 69 69 VAL VAL A . n A 1 61 PHE 61 70 70 PHE PHE A . n A 1 62 ILE 62 71 71 ILE ILE A . n A 1 63 LYS 63 72 72 LYS LYS A . n A 1 64 ARG 64 73 73 ARG ARG A . n A 1 65 SER 65 74 74 SER SER A . n A 1 66 ASP 66 75 75 ASP ASP A . n A 1 67 ALA 67 76 76 ALA ALA A . n A 1 68 ARG 68 77 ? ? ? A . n A 1 69 THR 69 78 ? ? ? A . n A 1 70 ALA 70 79 79 ALA ALA A . n A 1 71 PRO 71 80 80 PRO PRO A . n A 1 72 HIS 72 81 81 HIS HIS A . n A 1 73 GLY 73 82 82 GLY GLY A . n A 1 74 HIS 74 83 83 HIS HIS A . n A 1 75 VAL 75 84 84 VAL VAL A . n A 1 76 MET 76 85 85 MET MET A . n A 1 77 VAL 77 86 86 VAL VAL A . n A 1 78 GLU 78 87 87 GLU GLU A . n A 1 79 LEU 79 88 88 LEU LEU A . n A 1 80 VAL 80 89 89 VAL VAL A . n A 1 81 ALA 81 90 90 ALA ALA A . n A 1 82 GLU 82 91 91 GLU GLU A . n A 1 83 LEU 83 92 92 LEU LEU A . n A 1 84 GLU 84 93 93 GLU GLU A . n A 1 85 GLY 85 94 94 GLY GLY A . n A 1 86 ILE 86 95 95 ILE ILE A . n A 1 87 GLN 87 96 96 GLN GLN A . n A 1 88 TYR 88 97 97 TYR TYR A . n A 1 89 GLY 89 98 98 GLY GLY A . n A 1 90 ARG 90 99 99 ARG ARG A . n A 1 91 SER 91 100 100 SER SER A . n A 1 92 GLY 92 101 101 GLY GLY A . n A 1 93 GLU 93 102 102 GLU GLU A . n A 1 94 THR 94 103 103 THR THR A . n A 1 95 LEU 95 104 104 LEU LEU A . n A 1 96 GLY 96 105 105 GLY GLY A . n A 1 97 VAL 97 106 106 VAL VAL A . n A 1 98 LEU 98 107 107 LEU LEU A . n A 1 99 VAL 99 108 108 VAL VAL A . n A 1 100 PRO 100 109 109 PRO PRO A . n A 1 101 HIS 101 110 110 HIS HIS A . n A 1 102 VAL 102 111 111 VAL VAL A . n A 1 103 GLY 103 112 112 GLY GLY A . n A 1 104 GLU 104 113 113 GLU GLU A . n A 1 105 ILE 105 114 114 ILE ILE A . n A 1 106 PRO 106 115 115 PRO PRO A . n A 1 107 VAL 107 116 116 VAL VAL A . n A 1 108 ALA 108 117 117 ALA ALA A . n A 1 109 TYR 109 118 118 TYR TYR A . n A 1 110 ARG 110 119 119 ARG ARG A . n A 1 111 LYS 111 120 120 LYS LYS A . n A 1 112 VAL 112 121 121 VAL VAL A . n A 1 113 LEU 113 122 122 LEU LEU A . n A 1 114 LEU 114 123 123 LEU LEU A . n A 1 115 ARG 115 124 124 ARG ARG A . n A 1 116 LYS 116 125 125 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1CS5 1 201 210 A1CS5 LIG A . C 3 HOH 1 301 80 HOH HOH A . C 3 HOH 2 302 42 HOH HOH A . C 3 HOH 3 303 26 HOH HOH A . C 3 HOH 4 304 44 HOH HOH A . C 3 HOH 5 305 66 HOH HOH A . C 3 HOH 6 306 40 HOH HOH A . C 3 HOH 7 307 35 HOH HOH A . C 3 HOH 8 308 72 HOH HOH A . C 3 HOH 9 309 56 HOH HOH A . C 3 HOH 10 310 68 HOH HOH A . C 3 HOH 11 311 37 HOH HOH A . C 3 HOH 12 312 19 HOH HOH A . C 3 HOH 13 313 46 HOH HOH A . C 3 HOH 14 314 36 HOH HOH A . C 3 HOH 15 315 22 HOH HOH A . C 3 HOH 16 316 6 HOH HOH A . C 3 HOH 17 317 21 HOH HOH A . C 3 HOH 18 318 71 HOH HOH A . C 3 HOH 19 319 28 HOH HOH A . C 3 HOH 20 320 2 HOH HOH A . C 3 HOH 21 321 30 HOH HOH A . C 3 HOH 22 322 64 HOH HOH A . C 3 HOH 23 323 69 HOH HOH A . C 3 HOH 24 324 4 HOH HOH A . C 3 HOH 25 325 25 HOH HOH A . C 3 HOH 26 326 43 HOH HOH A . C 3 HOH 27 327 12 HOH HOH A . C 3 HOH 28 328 48 HOH HOH A . C 3 HOH 29 329 20 HOH HOH A . C 3 HOH 30 330 76 HOH HOH A . C 3 HOH 31 331 15 HOH HOH A . C 3 HOH 32 332 51 HOH HOH A . C 3 HOH 33 333 10 HOH HOH A . C 3 HOH 34 334 24 HOH HOH A . C 3 HOH 35 335 74 HOH HOH A . C 3 HOH 36 336 3 HOH HOH A . C 3 HOH 37 337 55 HOH HOH A . C 3 HOH 38 338 23 HOH HOH A . C 3 HOH 39 339 8 HOH HOH A . C 3 HOH 40 340 9 HOH HOH A . C 3 HOH 41 341 14 HOH HOH A . C 3 HOH 42 342 18 HOH HOH A . C 3 HOH 43 343 38 HOH HOH A . C 3 HOH 44 344 60 HOH HOH A . C 3 HOH 45 345 39 HOH HOH A . C 3 HOH 46 346 7 HOH HOH A . C 3 HOH 47 347 81 HOH HOH A . C 3 HOH 48 348 16 HOH HOH A . C 3 HOH 49 349 77 HOH HOH A . C 3 HOH 50 350 67 HOH HOH A . C 3 HOH 51 351 50 HOH HOH A . C 3 HOH 52 352 17 HOH HOH A . C 3 HOH 53 353 45 HOH HOH A . C 3 HOH 54 354 11 HOH HOH A . C 3 HOH 55 355 27 HOH HOH A . C 3 HOH 56 356 65 HOH HOH A . C 3 HOH 57 357 13 HOH HOH A . C 3 HOH 58 358 52 HOH HOH A . C 3 HOH 59 359 29 HOH HOH A . C 3 HOH 60 360 34 HOH HOH A . C 3 HOH 61 361 57 HOH HOH A . C 3 HOH 62 362 49 HOH HOH A . C 3 HOH 63 363 1 HOH HOH A . C 3 HOH 64 364 31 HOH HOH A . C 3 HOH 65 365 5 HOH HOH A . C 3 HOH 66 366 73 HOH HOH A . C 3 HOH 67 367 32 HOH HOH A . C 3 HOH 68 368 33 HOH HOH A . C 3 HOH 69 369 62 HOH HOH A . C 3 HOH 70 370 61 HOH HOH A . C 3 HOH 71 371 78 HOH HOH A . C 3 HOH 72 372 41 HOH HOH A . C 3 HOH 73 373 79 HOH HOH A . C 3 HOH 74 374 58 HOH HOH A . C 3 HOH 75 375 47 HOH HOH A . C 3 HOH 76 376 53 HOH HOH A . C 3 HOH 77 377 54 HOH HOH A . C 3 HOH 78 378 63 HOH HOH A . C 3 HOH 79 379 59 HOH HOH A . C 3 HOH 80 380 70 HOH HOH A . C 3 HOH 81 381 75 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 125 ? CG ? A LYS 116 CG 2 1 Y 1 A LYS 125 ? CD ? A LYS 116 CD 3 1 Y 1 A LYS 125 ? CE ? A LYS 116 CE 4 1 Y 1 A LYS 125 ? NZ ? A LYS 116 NZ # loop_ _software.classification _software.name _software.version _software.citation_id _software.pdbx_ordinal refinement REFMAC 5.8.0267 ? 1 phasing PHASER . ? 2 'data scaling' XDS . ? 3 'data reduction' XDS . ? 4 # _cell.entry_id 7IBI _cell.length_a 36.650 _cell.length_b 36.650 _cell.length_c 142.370 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7IBI _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 7IBI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_percent_sol 33.95 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_details '0.1 M HEPES pH 7.5 and 25% (w/v) PEG 3350. Reproducibility was improved by seeding.' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.pdbx_collection_date 2023-05-02 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.pdbx_wavelength_list 0.9184 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7IBI _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.d_resolution_low 35.49 _reflns.d_resolution_high 1.79 _reflns.number_obs 9866 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_netI_over_sigmaI 19.18 _reflns.pdbx_Rrim_I_all 0.083 _reflns.pdbx_CC_half 1.0 _reflns.pdbx_number_measured_all 119990 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_CC_half _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy 1 1 1.79 1.9 18153 1544 2.311 100.0 0.99 2.416 0.419 ? ? ? ? 1 2 1.90 2.03 18861 1455 1.138 100.0 2.22 1.185 0.769 ? ? ? ? 1 3 2.03 2.19 17438 1362 0.596 100.0 4.37 0.621 0.9059999999999999 ? ? ? ? 1 4 2.19 2.4 14909 1254 0.359 100.0 7.02 0.376 0.97 ? ? ? ? 1 5 2.40 2.68 14601 1146 0.217 100.0 12.03 0.226 0.992 ? ? ? ? 1 6 2.68 3.09 13140 1044 0.11599999999999999 100.0 21.66 0.121 0.998 ? ? ? ? 1 7 3.09 3.78 9899 887 0.049 100.0 46.93 0.052000000000000005 0.9990000000000001 ? ? ? ? 1 8 3.78 5.32 8497 723 0.027999999999999997 100.0 78.29 0.028999999999999998 1.0 ? ? ? ? 1 9 5.32 ? 4492 451 0.021 99.8 77.93 0.022000000000000002 1.0 ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 7IBI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9372 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.49 _refine.ls_d_res_high 1.79 _refine.ls_percent_reflns_obs 99.99 _refine.ls_R_factor_obs 0.20800 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20566 _refine.ls_R_factor_R_free 0.25419 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 494 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.B_iso_mean 38.819 _refine.aniso_B[1][1] 0.33 _refine.aniso_B[2][2] 0.33 _refine.aniso_B[3][3] -0.67 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.284 _refine.pdbx_overall_ESU_R_Free 0.193 _refine.overall_SU_ML 0.164 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.527 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 873 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 968 _refine_hist.d_res_high 1.79 _refine_hist.d_res_low 35.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.015 ? 2037 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.017 ? 1560 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.417 1.630 ? 2168 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.247 1.591 ? 3589 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.892 5.000 ? 212 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.887 22.821 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.247 15.000 ? 271 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.842 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.067 0.200 ? 189 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1878 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 340 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.455 3.751 ? 1044 'X-RAY DIFFRACTION' ? r_mcbond_other 2.459 3.759 ? 1040 'X-RAY DIFFRACTION' ? r_mcangle_it 3.918 5.593 ? 1030 'X-RAY DIFFRACTION' ? r_mcangle_other 3.916 5.590 ? 1031 'X-RAY DIFFRACTION' ? r_scbond_it 3.327 4.129 ? 993 'X-RAY DIFFRACTION' ? r_scbond_other 3.326 4.127 ? 994 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 5.511 6.082 ? 1139 'X-RAY DIFFRACTION' ? r_long_range_B_refined 8.553 44.549 ? 1641 'X-RAY DIFFRACTION' ? r_long_range_B_other 8.550 44.537 ? 1642 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.791 _refine_ls_shell.d_res_low 1.837 _refine_ls_shell.number_reflns_R_work 683 _refine_ls_shell.R_factor_R_work 0.347 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.338 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 7IBI _struct.title 'PanDDA analysis group deposition -- SARS-CoV-2 Nsp1 in complex with fragment X7214 (well H02) from the KIT library' _struct.pdbx_CASP_flag N _struct.pdbx_model_details ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7IBI _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'SARS-CoV-2, fragment screen, Nsp1, KIT library, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELV AELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRK ; _struct_ref.pdbx_align_begin 10 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7IBI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0DTD1 _struct_ref_seq.db_align_beg 10 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 10 _struct_ref_seq.pdbx_auth_seq_align_end 125 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 380 ? 1 MORE -3 ? 1 'SSA (A^2)' 6440 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 13 ? VAL A 17 ? GLN A 22 VAL A 26 5 ? 5 HELX_P HELX_P2 AA2 SER A 25 ? GLY A 40 ? SER A 34 GLY A 49 1 ? 16 HELX_P HELX_P3 AA3 VAL A 51 ? LEU A 55 ? VAL A 60 LEU A 64 5 ? 5 HELX_P HELX_P4 AA4 ALA A 70 ? HIS A 74 ? ALA A 79 HIS A 83 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 57 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 66 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 58 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 67 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.36 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 86 ? TYR A 88 ? ILE A 95 TYR A 97 AA1 2 VAL A 75 ? LEU A 83 ? VAL A 84 LEU A 92 AA1 3 ALA A 108 ? ARG A 115 ? ALA A 117 ARG A 124 AA1 4 HIS A 4 ? VAL A 11 ? HIS A 13 VAL A 20 AA1 5 CYS A 42 ? VAL A 45 ? CYS A 51 VAL A 54 AA1 6 THR A 94 ? PRO A 100 ? THR A 103 PRO A 109 AA1 7 TYR A 59 ? ARG A 64 ? TYR A 68 ARG A 73 AA1 8 VAL A 75 ? LEU A 83 ? VAL A 84 LEU A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 88 ? O TYR A 97 N ALA A 81 ? N ALA A 90 AA1 2 3 N VAL A 75 ? N VAL A 84 O LEU A 113 ? O LEU A 122 AA1 3 4 O ALA A 108 ? O ALA A 117 N VAL A 11 ? N VAL A 20 AA1 4 5 N PRO A 10 ? N PRO A 19 O LEU A 44 ? O LEU A 53 AA1 5 6 N GLY A 43 ? N GLY A 52 O VAL A 99 ? O VAL A 108 AA1 6 7 O LEU A 98 ? O LEU A 107 N VAL A 60 ? N VAL A 69 AA1 7 8 N PHE A 61 ? N PHE A 70 O VAL A 80 ? O VAL A 89 # _pdbx_entry_details.entry_id 7IBI _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 367 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 369 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.04 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 328 ? ? 1_555 O A HOH 358 ? ? 7_645 1.97 2 1 O A HOH 350 ? ? 1_555 O A HOH 350 ? ? 7_555 2.14 3 1 O A HOH 330 ? ? 1_555 O A HOH 378 ? ? 7_645 2.18 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 58 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -39.70 _pdbx_validate_torsion.psi 121.05 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A LEU 46 ? C N A LYS 47 ? C 1.96 2 1 C A LEU 46 ? D N A LYS 47 ? D 1.96 3 1 C A LYS 47 ? C N A ASP 48 ? C 1.79 4 1 C A LYS 47 ? D N A ASP 48 ? D 1.80 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 302 ? C HOH . 2 1 A HOH 304 ? C HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 10 ? A GLU 1 2 1 Y 1 A ARG 77 ? A ARG 68 3 1 Y 1 A THR 78 ? A THR 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1CS5 C01 C N N 1 A1CS5 C02 C N N 2 A1CS5 O03 O N N 3 A1CS5 N04 N N N 4 A1CS5 C05 C Y N 5 A1CS5 C06 C Y N 6 A1CS5 C07 C Y N 7 A1CS5 C08 C Y N 8 A1CS5 C09 C Y N 9 A1CS5 N10 N Y N 10 A1CS5 N11 N N N 11 A1CS5 C12 C N N 12 A1CS5 O13 O N N 13 A1CS5 C14 C N N 14 A1CS5 H1 H N N 15 A1CS5 H2 H N N 16 A1CS5 H3 H N N 17 A1CS5 H4 H N N 18 A1CS5 H5 H N N 19 A1CS5 H6 H N N 20 A1CS5 H7 H N N 21 A1CS5 H8 H N N 22 A1CS5 H9 H N N 23 A1CS5 H10 H N N 24 A1CS5 H11 H N N 25 ALA N N N N 26 ALA CA C N S 27 ALA C C N N 28 ALA O O N N 29 ALA CB C N N 30 ALA OXT O N N 31 ALA H H N N 32 ALA H2 H N N 33 ALA HA H N N 34 ALA HB1 H N N 35 ALA HB2 H N N 36 ALA HB3 H N N 37 ALA HXT H N N 38 ARG N N N N 39 ARG CA C N S 40 ARG C C N N 41 ARG O O N N 42 ARG CB C N N 43 ARG CG C N N 44 ARG CD C N N 45 ARG NE N N N 46 ARG CZ C N N 47 ARG NH1 N N N 48 ARG NH2 N N N 49 ARG OXT O N N 50 ARG H H N N 51 ARG H2 H N N 52 ARG HA H N N 53 ARG HB2 H N N 54 ARG HB3 H N N 55 ARG HG2 H N N 56 ARG HG3 H N N 57 ARG HD2 H N N 58 ARG HD3 H N N 59 ARG HE H N N 60 ARG HH11 H N N 61 ARG HH12 H N N 62 ARG HH21 H N N 63 ARG HH22 H N N 64 ARG HXT H N N 65 ASP N N N N 66 ASP CA C N S 67 ASP C C N N 68 ASP O O N N 69 ASP CB C N N 70 ASP CG C N N 71 ASP OD1 O N N 72 ASP OD2 O N N 73 ASP OXT O N N 74 ASP H H N N 75 ASP H2 H N N 76 ASP HA H N N 77 ASP HB2 H N N 78 ASP HB3 H N N 79 ASP HD2 H N N 80 ASP HXT H N N 81 CYS N N N N 82 CYS CA C N R 83 CYS C C N N 84 CYS O O N N 85 CYS CB C N N 86 CYS SG S N N 87 CYS OXT O N N 88 CYS H H N N 89 CYS H2 H N N 90 CYS HA H N N 91 CYS HB2 H N N 92 CYS HB3 H N N 93 CYS HG H N N 94 CYS HXT H N N 95 GLN N N N N 96 GLN CA C N S 97 GLN C C N N 98 GLN O O N N 99 GLN CB C N N 100 GLN CG C N N 101 GLN CD C N N 102 GLN OE1 O N N 103 GLN NE2 N N N 104 GLN OXT O N N 105 GLN H H N N 106 GLN H2 H N N 107 GLN HA H N N 108 GLN HB2 H N N 109 GLN HB3 H N N 110 GLN HG2 H N N 111 GLN HG3 H N N 112 GLN HE21 H N N 113 GLN HE22 H N N 114 GLN HXT H N N 115 GLU N N N N 116 GLU CA C N S 117 GLU C C N N 118 GLU O O N N 119 GLU CB C N N 120 GLU CG C N N 121 GLU CD C N N 122 GLU OE1 O N N 123 GLU OE2 O N N 124 GLU OXT O N N 125 GLU H H N N 126 GLU H2 H N N 127 GLU HA H N N 128 GLU HB2 H N N 129 GLU HB3 H N N 130 GLU HG2 H N N 131 GLU HG3 H N N 132 GLU HE2 H N N 133 GLU HXT H N N 134 GLY N N N N 135 GLY CA C N N 136 GLY C C N N 137 GLY O O N N 138 GLY OXT O N N 139 GLY H H N N 140 GLY H2 H N N 141 GLY HA2 H N N 142 GLY HA3 H N N 143 GLY HXT H N N 144 HIS N N N N 145 HIS CA C N S 146 HIS C C N N 147 HIS O O N N 148 HIS CB C N N 149 HIS CG C Y N 150 HIS ND1 N Y N 151 HIS CD2 C Y N 152 HIS CE1 C Y N 153 HIS NE2 N Y N 154 HIS OXT O N N 155 HIS H H N N 156 HIS H2 H N N 157 HIS HA H N N 158 HIS HB2 H N N 159 HIS HB3 H N N 160 HIS HD1 H N N 161 HIS HD2 H N N 162 HIS HE1 H N N 163 HIS HE2 H N N 164 HIS HXT H N N 165 HOH O O N N 166 HOH H1 H N N 167 HOH H2 H N N 168 ILE N N N N 169 ILE CA C N S 170 ILE C C N N 171 ILE O O N N 172 ILE CB C N S 173 ILE CG1 C N N 174 ILE CG2 C N N 175 ILE CD1 C N N 176 ILE OXT O N N 177 ILE H H N N 178 ILE H2 H N N 179 ILE HA H N N 180 ILE HB H N N 181 ILE HG12 H N N 182 ILE HG13 H N N 183 ILE HG21 H N N 184 ILE HG22 H N N 185 ILE HG23 H N N 186 ILE HD11 H N N 187 ILE HD12 H N N 188 ILE HD13 H N N 189 ILE HXT H N N 190 LEU N N N N 191 LEU CA C N S 192 LEU C C N N 193 LEU O O N N 194 LEU CB C N N 195 LEU CG C N N 196 LEU CD1 C N N 197 LEU CD2 C N N 198 LEU OXT O N N 199 LEU H H N N 200 LEU H2 H N N 201 LEU HA H N N 202 LEU HB2 H N N 203 LEU HB3 H N N 204 LEU HG H N N 205 LEU HD11 H N N 206 LEU HD12 H N N 207 LEU HD13 H N N 208 LEU HD21 H N N 209 LEU HD22 H N N 210 LEU HD23 H N N 211 LEU HXT H N N 212 LYS N N N N 213 LYS CA C N S 214 LYS C C N N 215 LYS O O N N 216 LYS CB C N N 217 LYS CG C N N 218 LYS CD C N N 219 LYS CE C N N 220 LYS NZ N N N 221 LYS OXT O N N 222 LYS H H N N 223 LYS H2 H N N 224 LYS HA H N N 225 LYS HB2 H N N 226 LYS HB3 H N N 227 LYS HG2 H N N 228 LYS HG3 H N N 229 LYS HD2 H N N 230 LYS HD3 H N N 231 LYS HE2 H N N 232 LYS HE3 H N N 233 LYS HZ1 H N N 234 LYS HZ2 H N N 235 LYS HZ3 H N N 236 LYS HXT H N N 237 MET N N N N 238 MET CA C N S 239 MET C C N N 240 MET O O N N 241 MET CB C N N 242 MET CG C N N 243 MET SD S N N 244 MET CE C N N 245 MET OXT O N N 246 MET H H N N 247 MET H2 H N N 248 MET HA H N N 249 MET HB2 H N N 250 MET HB3 H N N 251 MET HG2 H N N 252 MET HG3 H N N 253 MET HE1 H N N 254 MET HE2 H N N 255 MET HE3 H N N 256 MET HXT H N N 257 PHE N N N N 258 PHE CA C N S 259 PHE C C N N 260 PHE O O N N 261 PHE CB C N N 262 PHE CG C Y N 263 PHE CD1 C Y N 264 PHE CD2 C Y N 265 PHE CE1 C Y N 266 PHE CE2 C Y N 267 PHE CZ C Y N 268 PHE OXT O N N 269 PHE H H N N 270 PHE H2 H N N 271 PHE HA H N N 272 PHE HB2 H N N 273 PHE HB3 H N N 274 PHE HD1 H N N 275 PHE HD2 H N N 276 PHE HE1 H N N 277 PHE HE2 H N N 278 PHE HZ H N N 279 PHE HXT H N N 280 PRO N N N N 281 PRO CA C N S 282 PRO C C N N 283 PRO O O N N 284 PRO CB C N N 285 PRO CG C N N 286 PRO CD C N N 287 PRO OXT O N N 288 PRO H H N N 289 PRO HA H N N 290 PRO HB2 H N N 291 PRO HB3 H N N 292 PRO HG2 H N N 293 PRO HG3 H N N 294 PRO HD2 H N N 295 PRO HD3 H N N 296 PRO HXT H N N 297 SER N N N N 298 SER CA C N S 299 SER C C N N 300 SER O O N N 301 SER CB C N N 302 SER OG O N N 303 SER OXT O N N 304 SER H H N N 305 SER H2 H N N 306 SER HA H N N 307 SER HB2 H N N 308 SER HB3 H N N 309 SER HG H N N 310 SER HXT H N N 311 THR N N N N 312 THR CA C N S 313 THR C C N N 314 THR O O N N 315 THR CB C N R 316 THR OG1 O N N 317 THR CG2 C N N 318 THR OXT O N N 319 THR H H N N 320 THR H2 H N N 321 THR HA H N N 322 THR HB H N N 323 THR HG1 H N N 324 THR HG21 H N N 325 THR HG22 H N N 326 THR HG23 H N N 327 THR HXT H N N 328 TYR N N N N 329 TYR CA C N S 330 TYR C C N N 331 TYR O O N N 332 TYR CB C N N 333 TYR CG C Y N 334 TYR CD1 C Y N 335 TYR CD2 C Y N 336 TYR CE1 C Y N 337 TYR CE2 C Y N 338 TYR CZ C Y N 339 TYR OH O N N 340 TYR OXT O N N 341 TYR H H N N 342 TYR H2 H N N 343 TYR HA H N N 344 TYR HB2 H N N 345 TYR HB3 H N N 346 TYR HD1 H N N 347 TYR HD2 H N N 348 TYR HE1 H N N 349 TYR HE2 H N N 350 TYR HH H N N 351 TYR HXT H N N 352 VAL N N N N 353 VAL CA C N S 354 VAL C C N N 355 VAL O O N N 356 VAL CB C N N 357 VAL CG1 C N N 358 VAL CG2 C N N 359 VAL OXT O N N 360 VAL H H N N 361 VAL H2 H N N 362 VAL HA H N N 363 VAL HB H N N 364 VAL HG11 H N N 365 VAL HG12 H N N 366 VAL HG13 H N N 367 VAL HG21 H N N 368 VAL HG22 H N N 369 VAL HG23 H N N 370 VAL HXT H N N 371 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CS5 C14 C12 sing N N 1 A1CS5 C12 O13 doub N N 2 A1CS5 C12 N11 sing N N 3 A1CS5 N11 C09 sing N N 4 A1CS5 C09 C08 doub Y N 5 A1CS5 C09 N10 sing Y N 6 A1CS5 C08 C07 sing Y N 7 A1CS5 N10 C05 doub Y N 8 A1CS5 C07 C06 doub Y N 9 A1CS5 C05 C06 sing Y N 10 A1CS5 C05 N04 sing N N 11 A1CS5 N04 C02 sing N N 12 A1CS5 C02 O03 doub N N 13 A1CS5 C02 C01 sing N N 14 A1CS5 C01 H1 sing N N 15 A1CS5 C01 H2 sing N N 16 A1CS5 C01 H3 sing N N 17 A1CS5 N04 H4 sing N N 18 A1CS5 C06 H5 sing N N 19 A1CS5 C07 H6 sing N N 20 A1CS5 C08 H7 sing N N 21 A1CS5 N11 H8 sing N N 22 A1CS5 C14 H9 sing N N 23 A1CS5 C14 H10 sing N N 24 A1CS5 C14 H11 sing N N 25 ALA N CA sing N N 26 ALA N H sing N N 27 ALA N H2 sing N N 28 ALA CA C sing N N 29 ALA CA CB sing N N 30 ALA CA HA sing N N 31 ALA C O doub N N 32 ALA C OXT sing N N 33 ALA CB HB1 sing N N 34 ALA CB HB2 sing N N 35 ALA CB HB3 sing N N 36 ALA OXT HXT sing N N 37 ARG N CA sing N N 38 ARG N H sing N N 39 ARG N H2 sing N N 40 ARG CA C sing N N 41 ARG CA CB sing N N 42 ARG CA HA sing N N 43 ARG C O doub N N 44 ARG C OXT sing N N 45 ARG CB CG sing N N 46 ARG CB HB2 sing N N 47 ARG CB HB3 sing N N 48 ARG CG CD sing N N 49 ARG CG HG2 sing N N 50 ARG CG HG3 sing N N 51 ARG CD NE sing N N 52 ARG CD HD2 sing N N 53 ARG CD HD3 sing N N 54 ARG NE CZ sing N N 55 ARG NE HE sing N N 56 ARG CZ NH1 sing N N 57 ARG CZ NH2 doub N N 58 ARG NH1 HH11 sing N N 59 ARG NH1 HH12 sing N N 60 ARG NH2 HH21 sing N N 61 ARG NH2 HH22 sing N N 62 ARG OXT HXT sing N N 63 ASP N CA sing N N 64 ASP N H sing N N 65 ASP N H2 sing N N 66 ASP CA C sing N N 67 ASP CA CB sing N N 68 ASP CA HA sing N N 69 ASP C O doub N N 70 ASP C OXT sing N N 71 ASP CB CG sing N N 72 ASP CB HB2 sing N N 73 ASP CB HB3 sing N N 74 ASP CG OD1 doub N N 75 ASP CG OD2 sing N N 76 ASP OD2 HD2 sing N N 77 ASP OXT HXT sing N N 78 CYS N CA sing N N 79 CYS N H sing N N 80 CYS N H2 sing N N 81 CYS CA C sing N N 82 CYS CA CB sing N N 83 CYS CA HA sing N N 84 CYS C O doub N N 85 CYS C OXT sing N N 86 CYS CB SG sing N N 87 CYS CB HB2 sing N N 88 CYS CB HB3 sing N N 89 CYS SG HG sing N N 90 CYS OXT HXT sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 THR N CA sing N N 299 THR N H sing N N 300 THR N H2 sing N N 301 THR CA C sing N N 302 THR CA CB sing N N 303 THR CA HA sing N N 304 THR C O doub N N 305 THR C OXT sing N N 306 THR CB OG1 sing N N 307 THR CB CG2 sing N N 308 THR CB HB sing N N 309 THR OG1 HG1 sing N N 310 THR CG2 HG21 sing N N 311 THR CG2 HG22 sing N N 312 THR CG2 HG23 sing N N 313 THR OXT HXT sing N N 314 TYR N CA sing N N 315 TYR N H sing N N 316 TYR N H2 sing N N 317 TYR CA C sing N N 318 TYR CA CB sing N N 319 TYR CA HA sing N N 320 TYR C O doub N N 321 TYR C OXT sing N N 322 TYR CB CG sing N N 323 TYR CB HB2 sing N N 324 TYR CB HB3 sing N N 325 TYR CG CD1 doub Y N 326 TYR CG CD2 sing Y N 327 TYR CD1 CE1 sing Y N 328 TYR CD1 HD1 sing N N 329 TYR CD2 CE2 doub Y N 330 TYR CD2 HD2 sing N N 331 TYR CE1 CZ doub Y N 332 TYR CE1 HE1 sing N N 333 TYR CE2 CZ sing Y N 334 TYR CE2 HE2 sing N N 335 TYR CZ OH sing N N 336 TYR OH HH sing N N 337 TYR OXT HXT sing N N 338 VAL N CA sing N N 339 VAL N H sing N N 340 VAL N H2 sing N N 341 VAL CA C sing N N 342 VAL CA CB sing N N 343 VAL CA HA sing N N 344 VAL C O doub N N 345 VAL C OXT sing N N 346 VAL CB CG1 sing N N 347 VAL CB CG2 sing N N 348 VAL CB HB sing N N 349 VAL CG1 HG11 sing N N 350 VAL CG1 HG12 sing N N 351 VAL CG1 HG13 sing N N 352 VAL CG2 HG21 sing N N 353 VAL CG2 HG22 sing N N 354 VAL CG2 HG23 sing N N 355 VAL OXT HXT sing N N 356 # _pdbx_audit_support.ordinal 1 _pdbx_audit_support.funding_organization 'Helmholtz Association' _pdbx_audit_support.country Germany # _pdbx_deposit_group.group_id G_1002337 _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of SARS-CoV-2 Nsp1 soaked with fragments from the KIT library' _pdbx_deposit_group.group_description ;SARS-CoV-2 Nsp1 soaked with Fragments from the KIT library. Includes refined models for hit compounds with ligands placed into the PanDDA event-map, which is the primary evidence for ligand placement. The event-, average and Z-maps and the 2Fo-Fc and Fo-Fc maps are included in the mmcif file. 2Fo-Fc and Fo-Fc maps are not useful to consider as evidence for ligand placement. ; _pdbx_deposit_group.group_type 'changed state' # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.accession_code 7EQ4 _pdbx_initial_refinement_model.source_name PDB # _atom_sites.entry_id 7IBI _atom_sites.fract_transf_matrix[1][1] 0.027285 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027285 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007024 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ #