HEADER PROTEIN BINDING 17-JUL-20 7JFY TITLE GAS41 YEATS DOMAIN IN COMPLEX WITH 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEATS DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: B, A, C, D; COMPND 4 SYNONYM: GLIOMA-AMPLIFIED SEQUENCE 41,GAS41,NUMA-BINDING PROTEIN 1, COMPND 5 NUBI1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YEATS4, GAS41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-INHIBITOR COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.M.LINHARES,D.LISTUNOV,A.WINKLER,J.GREMBECKA,T.CIERPICKI REVDAT 2 18-OCT-23 7JFY 1 REMARK REVDAT 1 21-JUL-21 7JFY 0 JRNL AUTH B.M.LINHARES,D.LISTUNOV,A.WINKLER,J.GREMBECKA,T.CIERPICKI JRNL TITL GAS41 YEATS DOMAIN IN COMPLEX WITH 5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.372 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 41865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.995 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8400 - 5.1769 0.95 2600 161 0.2132 0.2367 REMARK 3 2 5.1769 - 4.1104 0.96 2635 123 0.1551 0.2315 REMARK 3 3 4.1104 - 3.5912 0.98 2640 139 0.1669 0.2128 REMARK 3 4 3.5912 - 3.2630 0.98 2626 150 0.1799 0.2426 REMARK 3 5 3.2630 - 3.0292 0.98 2653 136 0.2112 0.2792 REMARK 3 6 3.0292 - 2.8507 0.98 2653 137 0.2252 0.2642 REMARK 3 7 2.8507 - 2.7080 0.99 2653 143 0.2491 0.3146 REMARK 3 8 2.7080 - 2.5901 0.99 2708 126 0.2495 0.3571 REMARK 3 9 2.5901 - 2.4904 0.99 2645 154 0.2516 0.3074 REMARK 3 10 2.4904 - 2.4045 0.99 2632 164 0.2531 0.2979 REMARK 3 11 2.4045 - 2.3293 0.99 2671 133 0.2443 0.3036 REMARK 3 12 2.3293 - 2.2627 0.99 2688 111 0.2474 0.3041 REMARK 3 13 2.2627 - 2.2032 0.99 2686 130 0.2512 0.3084 REMARK 3 14 2.2032 - 2.1494 0.99 2683 135 0.2564 0.3172 REMARK 3 15 2.1494 - 2.1006 0.97 2601 149 0.2490 0.3176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.305 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.977 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4366 REMARK 3 ANGLE : 0.509 5938 REMARK 3 CHIRALITY : 0.048 625 REMARK 3 PLANARITY : 0.002 745 REMARK 3 DIHEDRAL : 15.057 2524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 1.11.1_2575 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42637 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.09119 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 7.3, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 2.2 M SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.63300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.25150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.63300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.25150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 339 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 499 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 383 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 472 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 454 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 447 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 MET B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 MET B 5 REMARK 465 ALA B 6 REMARK 465 GLU B 7 REMARK 465 PHE B 8 REMARK 465 GLY B 9 REMARK 465 PRO B 10 REMARK 465 ASP B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ARG B 15 REMARK 465 VAL B 16 REMARK 465 LYS B 17 REMARK 465 GLY B 18 REMARK 465 VAL B 19 REMARK 465 GLN B 145 REMARK 465 ASP B 146 REMARK 465 PRO B 147 REMARK 465 THR B 148 REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 MET A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 PHE A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 VAL A 16 REMARK 465 LYS A 17 REMARK 465 GLY C -4 REMARK 465 ALA C -3 REMARK 465 MET C -2 REMARK 465 ASP C -1 REMARK 465 PRO C 0 REMARK 465 MET C 1 REMARK 465 PHE C 2 REMARK 465 LYS C 3 REMARK 465 ARG C 4 REMARK 465 MET C 5 REMARK 465 ALA C 6 REMARK 465 GLU C 7 REMARK 465 PHE C 8 REMARK 465 GLY C 9 REMARK 465 PRO C 10 REMARK 465 ASP C 11 REMARK 465 SER C 12 REMARK 465 GLY C 13 REMARK 465 GLY C 14 REMARK 465 ARG C 15 REMARK 465 VAL C 16 REMARK 465 LYS C 17 REMARK 465 GLY C 18 REMARK 465 VAL C 19 REMARK 465 ASP C 146 REMARK 465 PRO C 147 REMARK 465 THR C 148 REMARK 465 GLY D -4 REMARK 465 ALA D -3 REMARK 465 MET D -2 REMARK 465 ASP D -1 REMARK 465 PRO D 0 REMARK 465 MET D 1 REMARK 465 PHE D 2 REMARK 465 LYS D 3 REMARK 465 ARG D 4 REMARK 465 MET D 5 REMARK 465 ALA D 6 REMARK 465 GLU D 7 REMARK 465 PHE D 8 REMARK 465 GLY D 9 REMARK 465 PRO D 10 REMARK 465 ASP D 11 REMARK 465 SER D 12 REMARK 465 GLY D 13 REMARK 465 GLY D 14 REMARK 465 ARG D 15 REMARK 465 VAL D 16 REMARK 465 LYS D 17 REMARK 465 GLY D 18 REMARK 465 VAL D 19 REMARK 465 ASP D 146 REMARK 465 PRO D 147 REMARK 465 THR D 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 21 CG1 CD1 REMARK 470 LYS B 36 CE NZ REMARK 470 GLU B 40 CD OE1 OE2 REMARK 470 LYS B 83 CE NZ REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 19 CG1 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 37 CD CE NZ REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 LYS A 64 CE NZ REMARK 470 ASN A 76 ND2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 THR A 148 OG1 CG2 REMARK 470 ARG C 32 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 37 CE NZ REMARK 470 GLU C 39 CG CD OE1 OE2 REMARK 470 GLU C 40 CG CD OE1 OE2 REMARK 470 LYS C 83 CD CE NZ REMARK 470 ARG C 110 CG CD NE CZ NH1 NH2 REMARK 470 SER C 123 OG REMARK 470 ASP C 124 CG OD1 OD2 REMARK 470 THR C 125 OG1 CG2 REMARK 470 ASN C 126 CG OD1 ND2 REMARK 470 MET C 128 CG SD CE REMARK 470 LYS C 131 CG CD CE NZ REMARK 470 LYS C 132 CG CD CE NZ REMARK 470 ILE D 21 CG1 CG2 CD1 REMARK 470 LYS D 36 CG CD CE NZ REMARK 470 GLU D 39 CG CD OE1 OE2 REMARK 470 GLU D 40 CG CD OE1 OE2 REMARK 470 GLU D 72 CG CD OE1 OE2 REMARK 470 LYS D 101 CD CE NZ REMARK 470 PRO D 107 CG CD REMARK 470 ASN D 108 CG OD1 ND2 REMARK 470 VAL D 112 CG1 REMARK 470 GLN D 122 CG CD OE1 NE2 REMARK 470 SER D 123 OG REMARK 470 ASP D 124 CG OD1 OD2 REMARK 470 THR D 125 OG1 CG2 REMARK 470 ASN D 126 CG OD1 ND2 REMARK 470 MET D 128 CG SD CE REMARK 470 LEU D 129 CG CD1 CD2 REMARK 470 LYS D 131 CG CD CE NZ REMARK 470 LYS D 132 CG CD CE NZ REMARK 470 ILE D 143 CG1 CG2 CD1 REMARK 470 GLN D 145 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 125 -81.09 -69.36 REMARK 500 LEU C 129 45.57 -80.15 REMARK 500 ASN D 76 71.38 54.39 REMARK 500 ALA D 127 20.23 -145.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 489 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 490 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 491 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 492 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B 493 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 494 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 495 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH B 496 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B 497 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH B 498 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B 499 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH B 500 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH B 501 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH B 503 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH B 504 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH B 505 DISTANCE = 8.50 ANGSTROMS REMARK 525 HOH B 506 DISTANCE = 8.79 ANGSTROMS REMARK 525 HOH B 507 DISTANCE = 9.06 ANGSTROMS REMARK 525 HOH B 508 DISTANCE = 9.09 ANGSTROMS REMARK 525 HOH B 509 DISTANCE = 9.72 ANGSTROMS REMARK 525 HOH A 473 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 474 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 475 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 479 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 480 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 481 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 482 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 483 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 484 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 485 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A 486 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 487 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 488 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A 489 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A 490 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH A 491 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH A 492 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A 493 DISTANCE = 9.54 ANGSTROMS REMARK 525 HOH C 461 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH C 462 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH C 463 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH C 464 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH C 465 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH C 466 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH C 467 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH C 468 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH D 452 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH D 453 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH D 454 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH D 455 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH D 456 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH D 457 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH D 458 DISTANCE = 9.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V91 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V91 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V91 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V91 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 202 DBREF 7JFY B 1 148 UNP O95619 YETS4_HUMAN 1 148 DBREF 7JFY A 1 148 UNP O95619 YETS4_HUMAN 1 148 DBREF 7JFY C 1 148 UNP O95619 YETS4_HUMAN 1 148 DBREF 7JFY D 1 148 UNP O95619 YETS4_HUMAN 1 148 SEQADV 7JFY GLY B -4 UNP O95619 EXPRESSION TAG SEQADV 7JFY ALA B -3 UNP O95619 EXPRESSION TAG SEQADV 7JFY MET B -2 UNP O95619 EXPRESSION TAG SEQADV 7JFY ASP B -1 UNP O95619 EXPRESSION TAG SEQADV 7JFY PRO B 0 UNP O95619 EXPRESSION TAG SEQADV 7JFY GLY A -4 UNP O95619 EXPRESSION TAG SEQADV 7JFY ALA A -3 UNP O95619 EXPRESSION TAG SEQADV 7JFY MET A -2 UNP O95619 EXPRESSION TAG SEQADV 7JFY ASP A -1 UNP O95619 EXPRESSION TAG SEQADV 7JFY PRO A 0 UNP O95619 EXPRESSION TAG SEQADV 7JFY GLY C -4 UNP O95619 EXPRESSION TAG SEQADV 7JFY ALA C -3 UNP O95619 EXPRESSION TAG SEQADV 7JFY MET C -2 UNP O95619 EXPRESSION TAG SEQADV 7JFY ASP C -1 UNP O95619 EXPRESSION TAG SEQADV 7JFY PRO C 0 UNP O95619 EXPRESSION TAG SEQADV 7JFY GLY D -4 UNP O95619 EXPRESSION TAG SEQADV 7JFY ALA D -3 UNP O95619 EXPRESSION TAG SEQADV 7JFY MET D -2 UNP O95619 EXPRESSION TAG SEQADV 7JFY ASP D -1 UNP O95619 EXPRESSION TAG SEQADV 7JFY PRO D 0 UNP O95619 EXPRESSION TAG SEQRES 1 B 153 GLY ALA MET ASP PRO MET PHE LYS ARG MET ALA GLU PHE SEQRES 2 B 153 GLY PRO ASP SER GLY GLY ARG VAL LYS GLY VAL THR ILE SEQRES 3 B 153 VAL LYS PRO ILE VAL TYR GLY ASN VAL ALA ARG TYR PHE SEQRES 4 B 153 GLY LYS LYS ARG GLU GLU ASP GLY HIS THR HIS GLN TRP SEQRES 5 B 153 THR VAL TYR VAL LYS PRO TYR ARG ASN GLU ASP MET SER SEQRES 6 B 153 ALA TYR VAL LYS LYS ILE GLN PHE LYS LEU HIS GLU SER SEQRES 7 B 153 TYR GLY ASN PRO LEU ARG VAL VAL THR LYS PRO PRO TYR SEQRES 8 B 153 GLU ILE THR GLU THR GLY TRP GLY GLU PHE GLU ILE ILE SEQRES 9 B 153 ILE LYS ILE PHE PHE ILE ASP PRO ASN GLU ARG PRO VAL SEQRES 10 B 153 THR LEU TYR HIS LEU LEU LYS LEU PHE GLN SER ASP THR SEQRES 11 B 153 ASN ALA MET LEU GLY LYS LYS THR VAL VAL SER GLU PHE SEQRES 12 B 153 TYR ASP GLU MET ILE PHE GLN ASP PRO THR SEQRES 1 A 153 GLY ALA MET ASP PRO MET PHE LYS ARG MET ALA GLU PHE SEQRES 2 A 153 GLY PRO ASP SER GLY GLY ARG VAL LYS GLY VAL THR ILE SEQRES 3 A 153 VAL LYS PRO ILE VAL TYR GLY ASN VAL ALA ARG TYR PHE SEQRES 4 A 153 GLY LYS LYS ARG GLU GLU ASP GLY HIS THR HIS GLN TRP SEQRES 5 A 153 THR VAL TYR VAL LYS PRO TYR ARG ASN GLU ASP MET SER SEQRES 6 A 153 ALA TYR VAL LYS LYS ILE GLN PHE LYS LEU HIS GLU SER SEQRES 7 A 153 TYR GLY ASN PRO LEU ARG VAL VAL THR LYS PRO PRO TYR SEQRES 8 A 153 GLU ILE THR GLU THR GLY TRP GLY GLU PHE GLU ILE ILE SEQRES 9 A 153 ILE LYS ILE PHE PHE ILE ASP PRO ASN GLU ARG PRO VAL SEQRES 10 A 153 THR LEU TYR HIS LEU LEU LYS LEU PHE GLN SER ASP THR SEQRES 11 A 153 ASN ALA MET LEU GLY LYS LYS THR VAL VAL SER GLU PHE SEQRES 12 A 153 TYR ASP GLU MET ILE PHE GLN ASP PRO THR SEQRES 1 C 153 GLY ALA MET ASP PRO MET PHE LYS ARG MET ALA GLU PHE SEQRES 2 C 153 GLY PRO ASP SER GLY GLY ARG VAL LYS GLY VAL THR ILE SEQRES 3 C 153 VAL LYS PRO ILE VAL TYR GLY ASN VAL ALA ARG TYR PHE SEQRES 4 C 153 GLY LYS LYS ARG GLU GLU ASP GLY HIS THR HIS GLN TRP SEQRES 5 C 153 THR VAL TYR VAL LYS PRO TYR ARG ASN GLU ASP MET SER SEQRES 6 C 153 ALA TYR VAL LYS LYS ILE GLN PHE LYS LEU HIS GLU SER SEQRES 7 C 153 TYR GLY ASN PRO LEU ARG VAL VAL THR LYS PRO PRO TYR SEQRES 8 C 153 GLU ILE THR GLU THR GLY TRP GLY GLU PHE GLU ILE ILE SEQRES 9 C 153 ILE LYS ILE PHE PHE ILE ASP PRO ASN GLU ARG PRO VAL SEQRES 10 C 153 THR LEU TYR HIS LEU LEU LYS LEU PHE GLN SER ASP THR SEQRES 11 C 153 ASN ALA MET LEU GLY LYS LYS THR VAL VAL SER GLU PHE SEQRES 12 C 153 TYR ASP GLU MET ILE PHE GLN ASP PRO THR SEQRES 1 D 153 GLY ALA MET ASP PRO MET PHE LYS ARG MET ALA GLU PHE SEQRES 2 D 153 GLY PRO ASP SER GLY GLY ARG VAL LYS GLY VAL THR ILE SEQRES 3 D 153 VAL LYS PRO ILE VAL TYR GLY ASN VAL ALA ARG TYR PHE SEQRES 4 D 153 GLY LYS LYS ARG GLU GLU ASP GLY HIS THR HIS GLN TRP SEQRES 5 D 153 THR VAL TYR VAL LYS PRO TYR ARG ASN GLU ASP MET SER SEQRES 6 D 153 ALA TYR VAL LYS LYS ILE GLN PHE LYS LEU HIS GLU SER SEQRES 7 D 153 TYR GLY ASN PRO LEU ARG VAL VAL THR LYS PRO PRO TYR SEQRES 8 D 153 GLU ILE THR GLU THR GLY TRP GLY GLU PHE GLU ILE ILE SEQRES 9 D 153 ILE LYS ILE PHE PHE ILE ASP PRO ASN GLU ARG PRO VAL SEQRES 10 D 153 THR LEU TYR HIS LEU LEU LYS LEU PHE GLN SER ASP THR SEQRES 11 D 153 ASN ALA MET LEU GLY LYS LYS THR VAL VAL SER GLU PHE SEQRES 12 D 153 TYR ASP GLU MET ILE PHE GLN ASP PRO THR HET V91 B 201 24 HET EDO B 202 4 HET DMS B 203 4 HET V91 A 201 24 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET V91 C 201 24 HET EDO C 202 4 HET V91 D 201 24 HET EDO D 202 4 HETNAM V91 N-(5-{3-[(2S)-1,3-THIAZOLIDIN-2-YL]AZETIDINE-1- HETNAM 2 V91 CARBONYL}THIOPHEN-2-YL)-L-PROLINAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 5 V91 4(C16 H18 N4 O2 S2) FORMUL 6 EDO 6(C2 H6 O2) FORMUL 7 DMS C2 H6 O S FORMUL 16 HOH *728(H2 O) HELIX 1 AA1 ASP B 58 ALA B 61 5 4 HELIX 2 AA2 SER B 123 LEU B 129 1 7 HELIX 3 AA3 ASP A 58 ALA A 61 5 4 HELIX 4 AA4 SER A 123 LEU A 129 1 7 HELIX 5 AA5 ASP C 58 ALA C 61 5 4 HELIX 6 AA6 ASP D 58 ALA D 61 5 4 SHEET 1 AA1 4 TYR B 86 GLY B 92 0 SHEET 2 AA1 4 HIS B 45 PRO B 53 -1 N TRP B 47 O GLU B 90 SHEET 3 AA1 4 ILE B 21 TYR B 33 -1 N VAL B 26 O LYS B 52 SHEET 4 AA1 4 VAL B 134 PHE B 144 -1 O PHE B 138 N TYR B 27 SHEET 1 AA2 4 LEU B 78 VAL B 81 0 SHEET 2 AA2 4 VAL B 63 LYS B 69 -1 N PHE B 68 O ARG B 79 SHEET 3 AA2 4 GLU B 97 PHE B 104 -1 O PHE B 103 N LYS B 65 SHEET 4 AA2 4 VAL B 112 LEU B 117 -1 O LEU B 114 N ILE B 100 SHEET 1 AA3 4 TYR A 86 GLY A 92 0 SHEET 2 AA3 4 HIS A 45 PRO A 53 -1 N TRP A 47 O GLU A 90 SHEET 3 AA3 4 VAL A 19 TYR A 33 -1 N VAL A 26 O LYS A 52 SHEET 4 AA3 4 VAL A 134 ASP A 146 -1 O PHE A 138 N TYR A 27 SHEET 1 AA4 4 LEU A 78 VAL A 81 0 SHEET 2 AA4 4 VAL A 63 LYS A 69 -1 N ILE A 66 O VAL A 81 SHEET 3 AA4 4 GLU A 97 PHE A 104 -1 O PHE A 103 N LYS A 65 SHEET 4 AA4 4 VAL A 112 LEU A 117 -1 O LEU A 114 N ILE A 100 SHEET 1 AA5 4 TYR C 86 GLY C 92 0 SHEET 2 AA5 4 HIS C 45 PRO C 53 -1 N TRP C 47 O GLU C 90 SHEET 3 AA5 4 ILE C 21 TYR C 33 -1 N VAL C 26 O LYS C 52 SHEET 4 AA5 4 VAL C 134 PHE C 144 -1 O MET C 142 N LYS C 23 SHEET 1 AA6 4 LEU C 78 VAL C 81 0 SHEET 2 AA6 4 VAL C 63 LYS C 69 -1 N ILE C 66 O VAL C 81 SHEET 3 AA6 4 GLU C 97 PHE C 104 -1 O PHE C 103 N LYS C 65 SHEET 4 AA6 4 VAL C 112 LEU C 117 -1 O LEU C 114 N ILE C 100 SHEET 1 AA7 4 TYR D 86 GLY D 92 0 SHEET 2 AA7 4 HIS D 45 PRO D 53 -1 N TRP D 47 O GLU D 90 SHEET 3 AA7 4 ILE D 21 TYR D 33 -1 N VAL D 26 O LYS D 52 SHEET 4 AA7 4 VAL D 134 PHE D 144 -1 O ASP D 140 N ILE D 25 SHEET 1 AA8 4 LEU D 78 VAL D 81 0 SHEET 2 AA8 4 VAL D 63 LYS D 69 -1 N PHE D 68 O ARG D 79 SHEET 3 AA8 4 GLU D 97 PHE D 104 -1 O PHE D 103 N LYS D 65 SHEET 4 AA8 4 VAL D 112 LEU D 117 -1 O LEU D 114 N ILE D 100 CISPEP 1 PRO B 84 PRO B 85 0 -0.15 CISPEP 2 PRO A 84 PRO A 85 0 -0.09 CISPEP 3 PRO C 84 PRO C 85 0 -0.26 CISPEP 4 PRO D 84 PRO D 85 0 0.12 SITE 1 AC1 11 HIS B 43 HIS B 71 SER B 73 TYR B 74 SITE 2 AC1 11 GLY B 92 TRP B 93 GLY B 94 GLU B 95 SITE 3 AC1 11 HOH B 339 HOH B 356 HOH B 363 SITE 1 AC2 4 VAL B 30 ARG B 32 GLN B 46 THR B 48 SITE 1 AC3 3 TYR B 50 LYS B 52 GLU B 87 SITE 1 AC4 13 HIS A 43 HIS A 71 SER A 73 TYR A 74 SITE 2 AC4 13 GLY A 92 TRP A 93 GLY A 94 GLU A 95 SITE 3 AC4 13 HOH A 347 HOH A 359 HOH A 371 HOH A 374 SITE 4 AC4 13 HOH A 383 SITE 1 AC5 4 ARG A 32 GLN A 46 TRP A 47 THR A 48 SITE 1 AC6 3 TYR A 33 GLN A 122 LYS A 132 SITE 1 AC7 6 PHE A 104 ARG A 110 ILE A 143 PHE A 144 SITE 2 AC7 6 HOH A 308 HOH A 318 SITE 1 AC8 14 HIS C 43 HIS C 71 SER C 73 TYR C 74 SITE 2 AC8 14 GLY C 92 TRP C 93 GLY C 94 GLU C 95 SITE 3 AC8 14 HOH C 327 HOH C 352 HOH C 392 HOH C 393 SITE 4 AC8 14 PHE D 121 HOH D 427 SITE 1 AC9 4 HOH B 313 HOH B 366 PRO C 84 PRO C 85 SITE 1 AD1 15 ASP C 41 GLY C 42 TRP C 93 HIS D 43 SITE 2 AD1 15 HIS D 71 SER D 73 TYR D 74 GLY D 92 SITE 3 AD1 15 TRP D 93 GLY D 94 GLU D 95 HOH D 337 SITE 4 AD1 15 HOH D 340 HOH D 346 HOH D 349 SITE 1 AD2 5 TYR A 139 LYS B 52 TYR D 54 ARG D 55 SITE 2 AD2 5 ASN D 56 CRYST1 117.266 112.503 63.222 90.00 116.74 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008528 0.000000 0.004297 0.00000 SCALE2 0.000000 0.008889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017712 0.00000