HEADER IMMUNE SYSTEM 03-AUG-20 7JMX TITLE CRYSTAL STRUCTURE OF A SARS-COV-2 CROSS-NEUTRALIZING ANTIBODY COVA1-16 TITLE 2 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: COVA1-16 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COVA1-16 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS SARS-COV-2, ANTIBODY, SPIKE, CORONAVIRUS, COVID-19, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.LIU,M.YUAN,X.ZHU,N.C.WU,I.A.WILSON REVDAT 5 18-OCT-23 7JMX 1 JRNL REVDAT 4 09-FEB-22 7JMX 1 JRNL REVDAT 3 30-DEC-20 7JMX 1 JRNL REVDAT 2 16-DEC-20 7JMX 1 JRNL REVDAT 1 14-OCT-20 7JMX 0 JRNL AUTH H.LIU,N.C.WU,M.YUAN,S.BANGARU,J.L.TORRES,T.G.CANIELS, JRNL AUTH 2 J.VAN SCHOOTEN,X.ZHU,C.D.LEE,P.J.M.BROUWER,M.J.VAN GILS, JRNL AUTH 3 R.W.SANDERS,A.B.WARD,I.A.WILSON JRNL TITL CROSS-NEUTRALIZATION OF A SARS-COV-2 ANTIBODY TO A JRNL TITL 2 FUNCTIONALLY CONSERVED SITE IS MEDIATED BY AVIDITY. JRNL REF IMMUNITY V. 53 1272 2020 JRNL REFN ISSN 1074-7613 JRNL PMID 33242394 JRNL DOI 10.1016/J.IMMUNI.2020.10.023 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.LIU,N.C.WU,M.YUAN,S.BANGARU,J.L.TORRES,T.G.CANIELS, REMARK 1 AUTH 2 J.VAN SCHOOTEN,X.ZHU,C.D.LEE,P.J.M.BROUWER,M.J.VAN GILS, REMARK 1 AUTH 3 R.W.SANDERS,A.B.WARD,I.A.WILSON REMARK 1 TITL CROSS-NEUTRALIZATION OF A SARS-COV-2 ANTIBODY TO A REMARK 1 TITL 2 FUNCTIONALLY CONSERVED SITE IS MEDIATED BY AVIDITY. REMARK 1 REF BIORXIV 2020 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 32793906 REMARK 1 DOI 10.1101/2020.08.02.233536 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.LIU,N.C.WU,M.YUAN,S.BANGARU,J.L.TORRES,T.G.CANIELS, REMARK 1 AUTH 2 J.VAN SCHOOTEN,X.ZHU,C.D.LEE,P.J.M.BROUWER,M.J.VAN GILS, REMARK 1 AUTH 3 R.W.SANDERS,A.B.WARD,I.A.WILSON REMARK 1 TITL CROSS-NEUTRALIZATION OF A SARS-COV-2 ANTIBODY TO A REMARK 1 TITL 2 FUNCTIONALLY CONSERVED SITE IS MEDIATED BY AVIDITY. REMARK 1 REF IMMUNITY V. 53 1272 2020 REMARK 1 REFN ISSN 1074-7613 REMARK 1 PMID 33242394 REMARK 1 DOI 10.1016/J.IMMUNI.2020.10.023 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 21874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6500 - 5.0600 0.97 2794 123 0.1942 0.2255 REMARK 3 2 5.0600 - 4.0200 1.00 2681 134 0.1669 0.1947 REMARK 3 3 4.0200 - 3.5100 1.00 2658 136 0.1935 0.2270 REMARK 3 4 3.5100 - 3.1900 1.00 2602 141 0.2242 0.2341 REMARK 3 5 3.1900 - 2.9600 1.00 2615 137 0.2394 0.2966 REMARK 3 6 2.9600 - 2.7900 1.00 2594 133 0.2615 0.2953 REMARK 3 7 2.7900 - 2.6500 1.00 2590 126 0.2770 0.3074 REMARK 3 8 2.6500 - 2.5300 0.88 2271 139 0.3059 0.3427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.337 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.667 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3312 REMARK 3 ANGLE : 1.009 4518 REMARK 3 CHIRALITY : 0.057 514 REMARK 3 PLANARITY : 0.006 580 REMARK 3 DIHEDRAL : 3.763 1957 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.1742 0.6580 -30.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1838 REMARK 3 T33: 0.1388 T12: -0.0411 REMARK 3 T13: -0.0277 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.2788 L22: 0.9807 REMARK 3 L33: 0.9131 L12: 0.2538 REMARK 3 L13: -0.5935 L23: -0.5923 REMARK 3 S TENSOR REMARK 3 S11: -0.0872 S12: 0.0630 S13: 0.0087 REMARK 3 S21: -0.0530 S22: 0.1578 S23: -0.0911 REMARK 3 S31: 0.1328 S32: -0.0799 S33: 0.0218 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22357 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.23600 REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4IMK,2Q20 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% GLYCEROL, 20% PEG-4000, 0.16 M NH4 REMARK 280 -SULFATE, 0.08 M ACETATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 78.14350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.14350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.14350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.14350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.14350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.14350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 78.14350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 78.14350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 78.14350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 78.14350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 78.14350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 78.14350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 78.14350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 78.14350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 78.14350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 78.14350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 78.14350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 78.14350 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 117.21525 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 39.07175 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.07175 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 117.21525 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 117.21525 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 117.21525 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 39.07175 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 39.07175 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 117.21525 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.07175 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 117.21525 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 39.07175 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 117.21525 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 39.07175 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 39.07175 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 39.07175 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 117.21525 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 39.07175 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 117.21525 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 117.21525 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 117.21525 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 39.07175 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 39.07175 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 117.21525 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 117.21525 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 39.07175 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 39.07175 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 39.07175 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 39.07175 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 117.21525 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 39.07175 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 117.21525 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 39.07175 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 117.21525 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 117.21525 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 117.21525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 H 303 LIES ON A SPECIAL POSITION. REMARK 375 O2 SO4 H 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR H 99A REMARK 465 ASP H 99B REMARK 465 ARG H 99C REMARK 465 SER H 99D REMARK 465 GLY H 99E REMARK 465 TYR H 99F REMARK 465 TYR H 99G REMARK 465 GLN H 99H REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 HIS H 217 REMARK 465 HIS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 LEU L 154 REMARK 465 GLN L 155 REMARK 465 SER L 156 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 LYS H 13 CG CD CE NZ REMARK 470 TYR H 99 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG H 100H CG CD NE CZ NH1 NH2 REMARK 470 LYS H 117 CG CD CE NZ REMARK 470 SER H 127 OG REMARK 470 LYS H 201 CG CD CE NZ REMARK 470 LYS H 206 CD CE NZ REMARK 470 ARG H 210 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 214 CG CD CE NZ REMARK 470 ARG L 39 CZ NH1 NH2 REMARK 470 LYS L 42 CE NZ REMARK 470 ASP L 122 CG OD1 OD2 REMARK 470 LYS L 126 CD CE NZ REMARK 470 LYS L 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU H 100J 73.16 -106.88 REMARK 500 ASP H 144 74.69 56.96 REMARK 500 SER L 30 -118.90 56.70 REMARK 500 ALA L 51 -43.78 68.42 REMARK 500 ALA L 84 175.54 179.81 REMARK 500 TYR L 91 26.98 -140.13 REMARK 500 ASN L 138 74.65 57.11 REMARK 500 PRO L 141 -164.75 -75.18 REMARK 500 LYS L 169 -77.93 -80.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 7JMX H 1 222 PDB 7JMX 7JMX 1 222 DBREF 7JMX L 1 214 PDB 7JMX 7JMX 1 214 SEQRES 1 H 238 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 238 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 238 TYR THR PHE THR SER TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 238 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ILE ILE ASN SEQRES 5 H 238 SER SER GLY GLY SER THR SER TYR ALA GLN LYS PHE GLN SEQRES 6 H 238 GLY ARG VAL THR MET THR ARG ASP THR SER THR SER THR SEQRES 7 H 238 VAL TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 238 ALA VAL TYR TYR CYS ALA ARG PRO PRO ARG ASN TYR TYR SEQRES 9 H 238 ASP ARG SER GLY TYR TYR GLN ARG ALA GLU TYR PHE GLN SEQRES 10 H 238 HIS TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 11 H 238 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 12 H 238 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 13 H 238 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 14 H 238 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 15 H 238 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 H 238 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 17 H 238 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 18 H 238 LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS HIS HIS SEQRES 19 H 238 HIS HIS HIS HIS SEQRES 1 L 214 ASP ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 L 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN ARG SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 214 ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASP ASN PRO PRO LEU THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HET ACT H 304 4 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *42(H2 O) HELIX 1 AA1 THR H 28 SER H 31 5 4 HELIX 2 AA2 GLN H 61 GLN H 64 5 4 HELIX 3 AA3 ARG H 83 THR H 87 5 5 HELIX 4 AA4 SER H 127 LYS H 129 5 3 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 GLN H 192 1 6 HELIX 7 AA7 GLN L 79 ILE L 83 5 5 HELIX 8 AA8 SER L 121 SER L 127 1 7 HELIX 9 AA9 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 ARG H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 ASN H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O SER H 58 N ILE H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 ARG H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 HIS H 102 TRP H 103 -1 O HIS H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 VAL H 211 -1 O VAL H 211 N TYR H 194 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N ASN L 34 O GLN L 89 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 3 LYS L 145 VAL L 150 0 SHEET 2 AB2 3 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 3 AB2 3 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.13 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -2.47 CISPEP 2 GLU H 148 PRO H 149 0 -0.90 CISPEP 3 SER L 7 PRO L 8 0 -7.97 CISPEP 4 PRO L 94 PRO L 95 0 -1.39 CISPEP 5 TYR L 140 PRO L 141 0 -2.39 CRYST1 156.287 156.287 156.287 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006398 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006398 0.00000