data_7JNH # _entry.id 7JNH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7JNH pdb_00007jnh 10.2210/pdb7jnh/pdb WWPDB D_1000251093 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-01-20 2 'Structure model' 1 1 2021-02-17 3 'Structure model' 1 2 2024-03-06 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7JNH _pdbx_database_status.recvd_initial_deposition_date 2020-08-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Torabi, S.F.' 1 0000-0003-1643-3583 'Vaidya, A.T.' 2 0000-0002-5812-5266 'Tycowski, K.T.' 3 0000-0002-4212-8585 'DeGregorio, S.J.' 4 ? 'Wang, J.' 5 0000-0002-4504-8038 'Shu, M.D.' 6 ? 'Steitz, T.A.' 7 0000-0002-3357-3505 'Steitz, J.A.' 8 0000-0002-0534-8722 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 371 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;RNA stabilization by a poly(A) tail 3'-end binding pocket and other modes of poly(A)-RNA interaction. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.abe6523 _citation.pdbx_database_id_PubMed 33414189 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Torabi, S.F.' 1 ? primary 'Vaidya, A.T.' 2 ? primary 'Tycowski, K.T.' 3 ? primary 'DeGregorio, S.J.' 4 ? primary 'Wang, J.' 5 ? primary 'Shu, M.D.' 6 ? primary 'Steitz, T.A.' 7 ? primary 'Steitz, J.A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '28-mer poly(A) RNA' 9172.806 1 ? ? ? ? 2 polymer syn 'Core double ENE RNA (Xtal construct) from Oryza sativa transposon,Core double ENE RNA (Xtal construct) from Oryza sativa transposon' 27541.082 1 ? ? ? 'The terminal C is modified in the structure,The terminal C is modified in the structure' 3 non-polymer syn 'STRONTIUM ION' 87.620 6 ? ? ? ? 4 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 12 ? ? ? ? 5 non-polymer syn SPERMIDINE 145.246 1 ? ? ? ? 6 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 7 water nat water 18.015 18 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no AAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAA A ? 2 polyribonucleotide no yes ;GGGCUGAGUUUUUACAUGACAAAGUUUUUAACGAGGCAGCGGCGAAAGUCGCUGUACUCUUUUCUUUGUCAUGGUUUUCU CAGCC(CCC) ; ;GGGCUGAGUUUUUACAUGACAAAGUUUUUAACGAGGCAGCGGCGAAAGUCGCUGUACUCUUUUCUUUGUCAUGGUUUUCU CAGCCC ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'STRONTIUM ION' SR 4 'COBALT HEXAMMINE(III)' NCO 5 SPERMIDINE SPD 6 'MAGNESIUM ION' MG 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 A n 1 3 A n 1 4 A n 1 5 A n 1 6 A n 1 7 A n 1 8 A n 1 9 A n 1 10 A n 1 11 A n 1 12 A n 1 13 A n 1 14 A n 1 15 A n 1 16 A n 1 17 A n 1 18 A n 1 19 A n 1 20 A n 1 21 A n 1 22 A n 1 23 A n 1 24 A n 1 25 A n 1 26 A n 1 27 A n 1 28 A n 2 1 G n 2 2 G n 2 3 G n 2 4 C n 2 5 U n 2 6 G n 2 7 A n 2 8 G n 2 9 U n 2 10 U n 2 11 U n 2 12 U n 2 13 U n 2 14 A n 2 15 C n 2 16 A n 2 17 U n 2 18 G n 2 19 A n 2 20 C n 2 21 A n 2 22 A n 2 23 A n 2 24 G n 2 25 U n 2 26 U n 2 27 U n 2 28 U n 2 29 U n 2 30 A n 2 31 A n 2 32 C n 2 33 G n 2 34 A n 2 35 G n 2 36 G n 2 37 C n 2 38 A n 2 39 G n 2 40 C n 2 41 G n 2 42 G n 2 43 C n 2 44 G n 2 45 A n 2 46 A n 2 47 A n 2 48 G n 2 49 U n 2 50 C n 2 51 G n 2 52 C n 2 53 U n 2 54 G n 2 55 U n 2 56 A n 2 57 C n 2 58 U n 2 59 C n 2 60 U n 2 61 U n 2 62 U n 2 63 U n 2 64 C n 2 65 U n 2 66 U n 2 67 U n 2 68 G n 2 69 U n 2 70 C n 2 71 A n 2 72 U n 2 73 G n 2 74 G n 2 75 U n 2 76 U n 2 77 U n 2 78 U n 2 79 C n 2 80 U n 2 81 C n 2 82 A n 2 83 G n 2 84 C n 2 85 C n 2 86 CCC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 28 'synthetic construct' ? 32630 ? 2 1 sample 1 50 'Oryza sativa' ? 4530 ? 2 2 sample 51 86 'Oryza sativa' ? 4530 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 SPD non-polymer . SPERMIDINE 'N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34)' 'C7 H19 N3' 145.246 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 A 12 12 12 A A A . n A 1 13 A 13 13 13 A A A . n A 1 14 A 14 14 14 A A A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 ? ? ? A . n A 1 18 A 18 18 ? ? ? A . n A 1 19 A 19 19 ? ? ? A . n A 1 20 A 20 20 20 A A A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 A 25 25 25 A A A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 C 4 4 4 C C B . n B 2 5 U 5 5 5 U U B . n B 2 6 G 6 6 6 G G B . n B 2 7 A 7 7 7 A A B . n B 2 8 G 8 8 8 G G B . n B 2 9 U 9 9 9 U U B . n B 2 10 U 10 10 10 U U B . n B 2 11 U 11 11 11 U U B . n B 2 12 U 12 12 12 U U B . n B 2 13 U 13 13 13 U U B . n B 2 14 A 14 14 14 A A B . n B 2 15 C 15 15 15 C C B . n B 2 16 A 16 16 16 A A B . n B 2 17 U 17 17 17 U U B . n B 2 18 G 18 18 18 G G B . n B 2 19 A 19 19 19 A A B . n B 2 20 C 20 20 20 C C B . n B 2 21 A 21 21 21 A A B . n B 2 22 A 22 22 22 A A B . n B 2 23 A 23 23 23 A A B . n B 2 24 G 24 24 24 G G B . n B 2 25 U 25 25 25 U U B . n B 2 26 U 26 26 26 U U B . n B 2 27 U 27 27 27 U U B . n B 2 28 U 28 28 28 U U B . n B 2 29 U 29 29 29 U U B . n B 2 30 A 30 30 30 A A B . n B 2 31 A 31 31 31 A A B . n B 2 32 C 32 32 32 C C B . n B 2 33 G 33 33 33 G G B . n B 2 34 A 34 34 34 A A B . n B 2 35 G 35 35 35 G G B . n B 2 36 G 36 36 36 G G B . n B 2 37 C 37 37 37 C C B . n B 2 38 A 38 38 38 A A B . n B 2 39 G 39 39 39 G G B . n B 2 40 C 40 40 40 C C B . n B 2 41 G 41 41 41 G G B . n B 2 42 G 42 42 42 G G B . n B 2 43 C 43 43 43 C C B . n B 2 44 G 44 44 44 G G B . n B 2 45 A 45 45 45 A A B . n B 2 46 A 46 46 46 A A B . n B 2 47 A 47 47 47 A A B . n B 2 48 G 48 48 48 G G B . n B 2 49 U 49 49 49 U U B . n B 2 50 C 50 50 50 C C B . n B 2 51 G 51 51 51 G G B . n B 2 52 C 52 52 52 C C B . n B 2 53 U 53 53 53 U U B . n B 2 54 G 54 54 54 G G B . n B 2 55 U 55 55 55 U U B . n B 2 56 A 56 56 56 A A B . n B 2 57 C 57 57 57 C C B . n B 2 58 U 58 58 58 U U B . n B 2 59 C 59 59 59 C C B . n B 2 60 U 60 60 60 U U B . n B 2 61 U 61 61 61 U U B . n B 2 62 U 62 62 62 U U B . n B 2 63 U 63 63 63 U U B . n B 2 64 C 64 64 64 C C B . n B 2 65 U 65 65 65 U U B . n B 2 66 U 66 66 66 U U B . n B 2 67 U 67 67 67 U U B . n B 2 68 G 68 68 68 G G B . n B 2 69 U 69 69 69 U U B . n B 2 70 C 70 70 70 C C B . n B 2 71 A 71 71 71 A A B . n B 2 72 U 72 72 72 U U B . n B 2 73 G 73 73 73 G G B . n B 2 74 G 74 74 74 G G B . n B 2 75 U 75 75 75 U U B . n B 2 76 U 76 76 76 U U B . n B 2 77 U 77 77 77 U U B . n B 2 78 U 78 78 78 U U B . n B 2 79 C 79 79 79 C C B . n B 2 80 U 80 80 80 U U B . n B 2 81 C 81 81 81 C C B . n B 2 82 A 82 82 82 A A B . n B 2 83 G 83 83 83 G G B . n B 2 84 C 84 84 84 C C B . n B 2 85 C 85 85 85 C C B . n B 2 86 CCC 86 86 86 CCC c23 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SR 1 101 1 SR SR A . D 3 SR 1 102 3 SR SR A . E 3 SR 1 103 5 SR SR A . F 4 NCO 1 104 12 NCO NCO A . G 3 SR 1 101 2 SR SR B . H 3 SR 1 102 4 SR SR B . I 3 SR 1 103 6 SR SR B . J 4 NCO 1 104 1 NCO NCO B . K 4 NCO 1 105 2 NCO NCO B . L 4 NCO 1 106 3 NCO NCO B . M 4 NCO 1 107 4 NCO NCO B . N 4 NCO 1 108 5 NCO NCO B . O 4 NCO 1 109 6 NCO NCO B . P 4 NCO 1 110 7 NCO NCO B . Q 4 NCO 1 111 8 NCO NCO B . R 4 NCO 1 112 9 NCO NCO B . S 4 NCO 1 113 10 NCO NCO B . T 4 NCO 1 114 11 NCO NCO B . U 5 SPD 1 115 1 SPD SPD B . V 6 MG 1 116 1 MG MO6 B . W 6 MG 1 117 2 MG MO6 B . X 6 MG 1 118 3 MG MO6 B . Y 7 HOH 1 201 3 HOH MO6 A . Y 7 HOH 2 202 1 HOH MO6 A . Y 7 HOH 3 203 3 HOH MO6 A . Y 7 HOH 4 204 3 HOH MO6 A . Y 7 HOH 5 205 1 HOH MO6 A . Z 7 HOH 1 201 1 HOH MO6 B . Z 7 HOH 2 202 2 HOH MO6 B . Z 7 HOH 3 203 1 HOH MO6 B . Z 7 HOH 4 204 3 HOH MO6 B . Z 7 HOH 5 205 2 HOH MO6 B . Z 7 HOH 6 206 3 HOH MO6 B . Z 7 HOH 7 207 1 HOH MO6 B . Z 7 HOH 8 208 1 HOH MO6 B . Z 7 HOH 9 209 2 HOH MO6 B . Z 7 HOH 10 210 2 HOH MO6 B . Z 7 HOH 11 211 2 HOH MO6 B . Z 7 HOH 12 212 2 HOH MO6 B . Z 7 HOH 13 213 3 HOH MO6 B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A A 16 ? "C5'" ? A A 16 "C5'" 2 1 Y 1 A A 16 ? "C4'" ? A A 16 "C4'" 3 1 Y 1 A A 16 ? "O4'" ? A A 16 "O4'" 4 1 Y 1 A A 16 ? "C3'" ? A A 16 "C3'" 5 1 Y 1 A A 16 ? "O3'" ? A A 16 "O3'" 6 1 Y 1 A A 16 ? "C2'" ? A A 16 "C2'" 7 1 Y 1 A A 16 ? "O2'" ? A A 16 "O2'" 8 1 Y 1 A A 16 ? "C1'" ? A A 16 "C1'" 9 1 Y 1 A A 16 ? N9 ? A A 16 N9 10 1 Y 1 A A 16 ? C8 ? A A 16 C8 11 1 Y 1 A A 16 ? N7 ? A A 16 N7 12 1 Y 1 A A 16 ? C5 ? A A 16 C5 13 1 Y 1 A A 16 ? C6 ? A A 16 C6 14 1 Y 1 A A 16 ? N6 ? A A 16 N6 15 1 Y 1 A A 16 ? N1 ? A A 16 N1 16 1 Y 1 A A 16 ? C2 ? A A 16 C2 17 1 Y 1 A A 16 ? N3 ? A A 16 N3 18 1 Y 1 A A 16 ? C4 ? A A 16 C4 19 1 Y 1 A A 20 ? P ? A A 20 P 20 1 Y 1 A A 20 ? OP1 ? A A 20 OP1 21 1 Y 1 A A 20 ? OP2 ? A A 20 OP2 22 1 Y 1 A A 20 ? "O5'" ? A A 20 "O5'" 23 1 Y 1 A A 20 ? "C5'" ? A A 20 "C5'" 24 1 Y 1 A A 20 ? "C4'" ? A A 20 "C4'" 25 1 Y 1 A A 20 ? "O4'" ? A A 20 "O4'" 26 1 Y 1 A A 20 ? "C3'" ? A A 20 "C3'" 27 1 Y 1 A A 20 ? "C2'" ? A A 20 "C2'" 28 1 Y 1 A A 20 ? "O2'" ? A A 20 "O2'" 29 1 Y 1 A A 20 ? "C1'" ? A A 20 "C1'" 30 1 Y 1 A A 20 ? N9 ? A A 20 N9 31 1 Y 1 A A 20 ? C8 ? A A 20 C8 32 1 Y 1 A A 20 ? N7 ? A A 20 N7 33 1 Y 1 A A 20 ? C5 ? A A 20 C5 34 1 Y 1 A A 20 ? C6 ? A A 20 C6 35 1 Y 1 A A 20 ? N6 ? A A 20 N6 36 1 Y 1 A A 20 ? N1 ? A A 20 N1 37 1 Y 1 A A 20 ? C2 ? A A 20 C2 38 1 Y 1 A A 20 ? N3 ? A A 20 N3 39 1 Y 1 A A 20 ? C4 ? A A 20 C4 40 1 Y 1 B A 21 ? OP2 ? B A 21 OP2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? HKL-2000 ? ? package . 1 ? 'data scaling' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? SCALEPACK ? ? program . 2 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 3 ? refinement ? ? 'Garib N. Murshudov' garib@ysbl.york.ac.uk ? ? ? ? Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html ? REFMAC ? ? program 5.8.0258 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Apr. 1, 2019' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.25 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7JNH _cell.details ? _cell.formula_units_Z ? _cell.length_a 93.973 _cell.length_a_esd ? _cell.length_b 93.973 _cell.length_b_esd ? _cell.length_c 202.171 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7JNH _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 64.97 _exptl_crystal.description 'Rod shaped crystals appeared within 7 to 20 days' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;50 mM sodium cacodylate, pH 7.0, 9 mM MgCl2, 1.8 mM cobalt (III) hexamine chloride, 0.9 mM spermidine, 2.5 mM spermine and 5% PEG 400 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-11-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9272 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9272 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7JNH _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.890 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11859 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 16.4 _reflns.pdbx_Rmerge_I_obs 0.147 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.05 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.879 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.151 _reflns.pdbx_Rpim_I_all 0.037 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star 0.998 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.89 3.00 ? 0.66 ? ? ? ? 812 ? ? ? ? ? 3.293 ? ? ? ? ? ? ? ? 10.2 ? 0.744 ? ? 3.45 0.979 ? 1 1 0.199 0.576 ? 2.900 2.950 ? ? ? ? ? ? 646 99.800 ? ? ? ? 7.485 ? ? ? ? ? ? ? ? 19.500 ? 0.724 ? ? 7.682 1.709 ? 2 1 0.141 ? ? 2.950 3.010 ? ? ? ? ? ? 622 99.800 ? ? ? ? 4.950 ? ? ? ? ? ? ? ? 19.500 ? 0.747 ? ? 5.079 1.130 ? 3 1 0.304 ? ? 3.010 3.070 ? ? ? ? ? ? 630 99.700 ? ? ? ? 3.734 ? ? ? ? ? ? ? ? 19.400 ? 0.722 ? ? 3.832 0.853 ? 4 1 0.505 ? ? 3.070 3.140 ? ? ? ? ? ? 650 99.800 ? ? ? ? 2.214 ? ? ? ? ? ? ? ? 19.000 ? 0.741 ? ? 2.273 0.513 ? 5 1 0.763 ? ? 3.140 3.210 ? ? ? ? ? ? 619 99.800 ? ? ? ? 1.358 ? ? ? ? ? ? ? ? 18.500 ? 0.769 ? ? 1.396 0.320 ? 6 1 0.920 ? ? 3.210 3.290 ? ? ? ? ? ? 629 99.400 ? ? ? ? 1.112 ? ? ? ? ? ? ? ? 17.300 ? 0.761 ? ? 1.146 0.271 ? 7 1 0.885 ? ? 3.290 3.380 ? ? ? ? ? ? 645 99.700 ? ? ? ? 0.967 ? ? ? ? ? ? ? ? 18.200 ? 0.765 ? ? 0.994 0.228 ? 8 1 0.949 ? ? 3.380 3.480 ? ? ? ? ? ? 635 99.800 ? ? ? ? 0.789 ? ? ? ? ? ? ? ? 20.000 ? 0.784 ? ? 0.809 0.178 ? 9 1 0.965 ? ? 3.480 3.590 ? ? ? ? ? ? 637 99.700 ? ? ? ? 0.631 ? ? ? ? ? ? ? ? 19.900 ? 0.794 ? ? 0.648 0.143 ? 10 1 0.973 ? ? 3.590 3.720 ? ? ? ? ? ? 649 99.800 ? ? ? ? 0.504 ? ? ? ? ? ? ? ? 19.500 ? 0.860 ? ? 0.517 0.116 ? 11 1 0.986 ? ? 3.720 3.870 ? ? ? ? ? ? 638 100.000 ? ? ? ? 0.350 ? ? ? ? ? ? ? ? 19.300 ? 0.868 ? ? 0.359 0.081 ? 12 1 0.991 ? ? 3.870 4.040 ? ? ? ? ? ? 647 99.800 ? ? ? ? 0.267 ? ? ? ? ? ? ? ? 18.900 ? 0.932 ? ? 0.274 0.062 ? 13 1 0.993 ? ? 4.040 4.260 ? ? ? ? ? ? 653 100.000 ? ? ? ? 0.227 ? ? ? ? ? ? ? ? 17.700 ? 0.948 ? ? 0.234 0.055 ? 14 1 0.993 ? ? 4.260 4.520 ? ? ? ? ? ? 659 100.000 ? ? ? ? 0.167 ? ? ? ? ? ? ? ? 17.800 ? 1.043 ? ? 0.172 0.041 ? 15 1 0.998 ? ? 4.520 4.870 ? ? ? ? ? ? 654 100.000 ? ? ? ? 0.139 ? ? ? ? ? ? ? ? 19.500 ? 1.074 ? ? 0.143 0.032 ? 16 1 0.997 ? ? 4.870 5.360 ? ? ? ? ? ? 665 100.000 ? ? ? ? 0.110 ? ? ? ? ? ? ? ? 19.000 ? 1.155 ? ? 0.113 0.026 ? 17 1 0.997 ? ? 5.360 6.140 ? ? ? ? ? ? 681 100.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 17.900 ? 1.152 ? ? 0.089 0.021 ? 18 1 0.998 ? ? 6.140 7.730 ? ? ? ? ? ? 695 99.400 ? ? ? ? 0.061 ? ? ? ? ? ? ? ? 17.500 ? 0.968 ? ? 0.063 0.015 ? 19 1 0.999 ? ? 7.730 50.000 ? ? ? ? ? ? 776 99.400 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 15.900 ? 1.006 ? ? 0.049 0.013 ? 20 1 0.998 ? ? # _refine.aniso_B[1][1] 0.7000 _refine.aniso_B[1][2] 0.3500 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] 0.7000 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -2.2800 _refine.B_iso_max 228.300 _refine.B_iso_mean 108.8460 _refine.B_iso_min 75.330 _refine.correlation_coeff_Fo_to_Fc 0.9770 _refine.correlation_coeff_Fo_to_Fc_free 0.9560 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7JNH _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.8900 _refine.ls_d_res_low 47.0300 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11269 _refine.ls_number_reflns_R_free 581 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.1000 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1862 _refine.ls_R_factor_R_free 0.2254 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1842 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model dENE _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.7070 _refine.pdbx_overall_ESU_R_Free 0.3140 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 16.9550 _refine.overall_SU_ML 0.2900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.8900 _refine_hist.d_res_low 47.0300 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2445 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 111 _refine_hist.pdbx_B_iso_mean_ligand 148.24 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2324 _refine_hist.pdbx_number_atoms_ligand 121 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.011 2700 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 1301 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.951 1.392 4284 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.675 2.983 3067 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.138 0.200 437 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 1282 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 564 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.8950 _refine_ls_shell.d_res_low 2.9700 _refine_ls_shell.number_reflns_all 586 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_R_work 564 _refine_ls_shell.percent_reflns_obs 64.7500 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4630 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.4540 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7JNH _struct.title 'Crystal structure of a double-ENE RNA stability element in complex with a 28-mer poly(A) RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7JNH _struct_keywords.text ;RNA stability, element for nuclear expression (ENE), poly(A) tail, major-groove triple helix, quintuple-base transition motif, WC-H A-minor interaction, poly(A) 3-end binding pocket, RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 5 ? V N N 6 ? W N N 6 ? X N N 6 ? Y N N 7 ? Z N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7JNH 7JNH ? 1 ? 1 2 GB AL442105.2 AL442105.2 ? 2 UGAGUUUUUACAUGACAAAGUUUUUAACGAGGCAGC 27466 3 GB AL442105.2 AL442105.2 ? 2 GCUGUACUCUUUUCUUUGUCAUGGUUUUCUCA 27424 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7JNH A 1 ? 28 ? 7JNH 1 ? 28 ? 1 28 2 2 7JNH B 5 ? 40 ? AL442105.2 27466 ? 27501 ? 5 40 3 3 7JNH B 51 ? 82 ? AL442105.2 27424 ? 27455 ? 51 82 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 7JNH G B 1 ? GB AL442105.2 ? ? insertion 1 1 2 7JNH G B 2 ? GB AL442105.2 ? ? insertion 2 2 2 7JNH G B 3 ? GB AL442105.2 ? ? insertion 3 3 2 7JNH C B 4 ? GB AL442105.2 ? ? insertion 4 4 2 7JNH G B 41 ? GB AL442105.2 ? ? linker 41 5 2 7JNH G B 42 ? GB AL442105.2 ? ? linker 42 6 2 7JNH C B 43 ? GB AL442105.2 ? ? linker 43 7 2 7JNH G B 44 ? GB AL442105.2 ? ? linker 44 8 2 7JNH A B 45 ? GB AL442105.2 ? ? linker 45 9 2 7JNH A B 46 ? GB AL442105.2 ? ? linker 46 10 2 7JNH A B 47 ? GB AL442105.2 ? ? linker 47 11 2 7JNH G B 48 ? GB AL442105.2 ? ? linker 48 12 2 7JNH U B 49 ? GB AL442105.2 ? ? linker 49 13 2 7JNH C B 50 ? GB AL442105.2 ? ? linker 50 14 3 7JNH G B 83 ? GB AL442105.2 ? ? insertion 83 15 3 7JNH C B 84 ? GB AL442105.2 ? ? insertion 84 16 3 7JNH C B 85 ? GB AL442105.2 ? ? insertion 85 17 3 7JNH CCC B 86 ? GB AL442105.2 ? ? insertion 86 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9430 ? 1 MORE -179 ? 1 'SSA (A^2)' 17780 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B C 85 "O3'" ? ? ? 1_555 B CCC 86 P ? ? B C 85 B CCC 86 1_555 ? ? ? ? ? ? ? 1.595 ? ? metalc1 metalc ? ? Y HOH . O ? ? ? 10_556 X MG . MG ? ? A HOH 201 B MG 118 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc2 metalc ? ? Y HOH . O ? ? ? 6_554 V MG . MG ? ? A HOH 202 B MG 116 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc3 metalc ? ? Y HOH . O ? ? ? 10_556 X MG . MG ? ? A HOH 203 B MG 118 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc4 metalc ? ? Y HOH . O ? ? ? 10_556 X MG . MG ? ? A HOH 204 B MG 118 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc5 metalc ? ? Y HOH . O ? ? ? 6_554 V MG . MG ? ? A HOH 205 B MG 116 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc6 metalc ? ? V MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 116 B HOH 201 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc7 metalc ? ? V MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 116 B HOH 203 6_554 ? ? ? ? ? ? ? 2.190 ? ? metalc8 metalc ? ? V MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 116 B HOH 207 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc9 metalc ? ? V MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 116 B HOH 208 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc10 metalc ? ? W MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 117 B HOH 202 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc11 metalc ? ? W MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 117 B HOH 205 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc12 metalc ? ? W MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 117 B HOH 209 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc13 metalc ? ? W MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 117 B HOH 210 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc14 metalc ? ? W MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 117 B HOH 211 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc15 metalc ? ? W MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 117 B HOH 212 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc16 metalc ? ? X MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 118 B HOH 204 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc17 metalc ? ? X MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 118 B HOH 206 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc18 metalc ? ? X MG . MG ? ? ? 1_555 Z HOH . O ? ? B MG 118 B HOH 213 1_555 ? ? ? ? ? ? ? 2.188 ? ? hydrog1 hydrog ? ? A A 2 N3 ? ? ? 1_555 B G 3 N2 ? ? A A 2 B G 3 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog2 hydrog ? ? A A 5 N6 ? ? ? 1_555 B A 82 N3 ? ? A A 5 B A 82 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog3 hydrog ? ? A A 6 N1 ? ? ? 1_555 B G 6 N2 ? ? A A 6 B G 6 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog4 hydrog ? ? A A 6 N6 ? ? ? 1_555 B G 6 N3 ? ? A A 6 B G 6 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog5 hydrog ? ? A A 7 N6 ? ? ? 1_555 B C 81 O2 ? ? A A 7 B C 81 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog6 hydrog ? ? A A 8 N6 ? ? ? 1_555 B U 80 O2 ? ? A A 8 B U 80 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog7 hydrog ? ? A A 9 N1 ? ? ? 1_555 B G 8 N2 ? ? A A 9 B G 8 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog8 hydrog ? ? A A 9 N6 ? ? ? 1_555 B G 8 N3 ? ? A A 9 B G 8 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog9 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 9 O4 ? ? A A 10 B U 9 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog10 hydrog ? ? A A 10 N7 ? ? ? 1_555 B U 9 N3 ? ? A A 10 B U 9 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog11 hydrog ? ? A A 10 N6 ? ? ? 1_555 B C 79 O2 ? ? A A 10 B C 79 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog12 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 10 O4 ? ? A A 11 B U 10 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog13 hydrog ? ? A A 11 N7 ? ? ? 1_555 B U 10 N3 ? ? A A 11 B U 10 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog14 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 78 N3 ? ? A A 11 B U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 78 O4 ? ? A A 11 B U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 12 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 12 B U 11 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog17 hydrog ? ? A A 12 N7 ? ? ? 1_555 B U 11 N3 ? ? A A 12 B U 11 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A A 12 N1 ? ? ? 1_555 B U 77 N3 ? ? A A 12 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 12 N6 ? ? ? 1_555 B U 77 O4 ? ? A A 12 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 13 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 13 B U 12 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog21 hydrog ? ? A A 13 N7 ? ? ? 1_555 B U 12 N3 ? ? A A 13 B U 12 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog22 hydrog ? ? A A 13 N1 ? ? ? 1_555 B U 76 N3 ? ? A A 13 B U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 13 N6 ? ? ? 1_555 B U 76 O4 ? ? A A 13 B U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 13 O4 ? ? A A 14 B U 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog25 hydrog ? ? A A 14 N7 ? ? ? 1_555 B U 13 N3 ? ? A A 14 B U 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog26 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 75 N3 ? ? A A 14 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 75 O4 ? ? A A 14 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 15 N6 ? ? ? 1_555 B U 75 O2 ? ? A A 15 B U 75 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog29 hydrog ? ? A A 22 N6 ? ? ? 1_555 B U 65 O2 ? ? A A 22 B U 65 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog30 hydrog ? ? A A 23 N1 ? ? ? 1_555 B G 24 N2 ? ? A A 23 B G 24 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog31 hydrog ? ? A A 23 N6 ? ? ? 1_555 B G 24 N3 ? ? A A 23 B G 24 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog32 hydrog ? ? A A 24 N6 ? ? ? 1_555 B U 25 O4 ? ? A A 24 B U 25 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? A A 24 N7 ? ? ? 1_555 B U 25 N3 ? ? A A 24 B U 25 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? A A 24 N6 ? ? ? 1_555 B C 64 O2 ? ? A A 24 B C 64 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog35 hydrog ? ? A A 25 N6 ? ? ? 1_555 B U 26 O4 ? ? A A 25 B U 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog36 hydrog ? ? A A 25 N7 ? ? ? 1_555 B U 26 N3 ? ? A A 25 B U 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog37 hydrog ? ? A A 25 N1 ? ? ? 1_555 B U 63 N3 ? ? A A 25 B U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 25 N6 ? ? ? 1_555 B U 63 O4 ? ? A A 25 B U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 26 N6 ? ? ? 1_555 B U 27 O4 ? ? A A 26 B U 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog40 hydrog ? ? A A 26 N7 ? ? ? 1_555 B U 27 N3 ? ? A A 26 B U 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog41 hydrog ? ? A A 26 N1 ? ? ? 1_555 B U 62 N3 ? ? A A 26 B U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 26 N6 ? ? ? 1_555 B U 62 O4 ? ? A A 26 B U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 27 N6 ? ? ? 1_555 B U 28 O4 ? ? A A 27 B U 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog44 hydrog ? ? A A 27 N7 ? ? ? 1_555 B U 28 N3 ? ? A A 27 B U 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog45 hydrog ? ? A A 27 N1 ? ? ? 1_555 B U 61 N3 ? ? A A 27 B U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 27 N6 ? ? ? 1_555 B U 61 O4 ? ? A A 27 B U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 28 N6 ? ? ? 1_555 B U 29 O4 ? ? A A 28 B U 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog48 hydrog ? ? A A 28 N7 ? ? ? 1_555 B U 29 N3 ? ? A A 28 B U 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog49 hydrog ? ? A A 28 N1 ? ? ? 1_555 B U 60 N3 ? ? A A 28 B U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 28 N6 ? ? ? 1_555 B U 60 O4 ? ? A A 28 B U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 1 N1 ? ? ? 1_555 B CCC 86 N3 ? ? B G 1 B CCC 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 1 N2 ? ? ? 1_555 B CCC 86 O2 ? ? B G 1 B CCC 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 1 O6 ? ? ? 1_555 B CCC 86 N4 ? ? B G 1 B CCC 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 85 N3 ? ? B G 2 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 85 O2 ? ? B G 2 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 85 N4 ? ? B G 2 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 84 N3 ? ? B G 3 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 84 O2 ? ? B G 3 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 84 N4 ? ? B G 3 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 83 N1 ? ? B C 4 B G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 83 O6 ? ? B C 4 B G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 83 N2 ? ? B C 4 B G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 82 N1 ? ? B U 5 B A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 82 N6 ? ? B U 5 B A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 81 N3 ? ? B G 6 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 81 O2 ? ? B G 6 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 81 N4 ? ? B G 6 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 80 N3 ? ? B A 7 B U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 80 O4 ? ? B A 7 B U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 79 N3 ? ? B G 8 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 79 O2 ? ? B G 8 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 79 N4 ? ? B G 8 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B A 14 N1 ? ? ? 1_555 B G 74 N1 ? ? B A 14 B G 74 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog74 hydrog ? ? B A 14 N6 ? ? ? 1_555 B G 74 O6 ? ? B A 14 B G 74 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog75 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 73 N1 ? ? B C 15 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 73 O6 ? ? B C 15 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 73 N2 ? ? B C 15 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B A 16 N1 ? ? ? 1_555 B U 72 N3 ? ? B A 16 B U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B A 16 N6 ? ? ? 1_555 B U 72 O4 ? ? B A 16 B U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B U 17 N3 ? ? ? 1_555 B A 71 N1 ? ? B U 17 B A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B U 17 O4 ? ? ? 1_555 B A 71 N6 ? ? B U 17 B A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 18 N1 ? ? ? 1_555 B C 70 N3 ? ? B G 18 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 18 N2 ? ? ? 1_555 B C 70 O2 ? ? B G 18 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 18 O6 ? ? ? 1_555 B C 70 N4 ? ? B G 18 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B A 19 N1 ? ? ? 1_555 B U 69 N3 ? ? B A 19 B U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B A 19 N6 ? ? ? 1_555 B U 69 O4 ? ? B A 19 B U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 68 N1 ? ? B C 20 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 68 O6 ? ? B C 20 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 68 N2 ? ? B C 20 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B A 21 N1 ? ? ? 1_555 B U 67 N3 ? ? B A 21 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B A 21 N6 ? ? ? 1_555 B U 67 O4 ? ? B A 21 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B A 22 N1 ? ? ? 1_555 B U 66 N3 ? ? B A 22 B U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B A 22 N6 ? ? ? 1_555 B U 66 O4 ? ? B A 22 B U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B A 23 N1 ? ? ? 1_555 B U 65 N3 ? ? B A 23 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B A 23 N6 ? ? ? 1_555 B U 65 O4 ? ? B A 23 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 64 N3 ? ? B G 24 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 64 O2 ? ? B G 24 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 64 N4 ? ? B G 24 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B A 31 N1 ? ? ? 1_555 B C 57 N4 ? ? B A 31 B C 57 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog100 hydrog ? ? B G 33 N1 ? ? ? 1_555 B C 59 N3 ? ? B G 33 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 33 N2 ? ? ? 1_555 B C 59 O2 ? ? B G 33 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 33 O6 ? ? ? 1_555 B C 59 N4 ? ? B G 33 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B A 34 N1 ? ? ? 1_555 B U 58 N3 ? ? B A 34 B U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B A 34 N6 ? ? ? 1_555 B U 58 O4 ? ? B A 34 B U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 35 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 35 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 35 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 35 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 35 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 35 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 36 N1 ? ? ? 1_555 B U 55 O2 ? ? B G 36 B U 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog109 hydrog ? ? B G 36 O6 ? ? ? 1_555 B U 55 N3 ? ? B G 36 B U 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog110 hydrog ? ? B C 37 N3 ? ? ? 1_555 B G 54 N1 ? ? B C 37 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B C 37 N4 ? ? ? 1_555 B G 54 O6 ? ? B C 37 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B C 37 O2 ? ? ? 1_555 B G 54 N2 ? ? B C 37 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B A 38 N1 ? ? ? 1_555 B U 53 N3 ? ? B A 38 B U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B A 38 N6 ? ? ? 1_555 B U 53 O4 ? ? B A 38 B U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B G 39 N1 ? ? ? 1_555 B C 52 N3 ? ? B G 39 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B G 39 N2 ? ? ? 1_555 B C 52 O2 ? ? B G 39 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B G 39 O6 ? ? ? 1_555 B C 52 N4 ? ? B G 39 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B C 40 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 40 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B C 40 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 40 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B C 40 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 40 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B G 41 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 41 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B G 41 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 41 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B G 41 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 41 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 42 N1 ? ? ? 1_555 B U 49 O2 ? ? B G 42 B U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog125 hydrog ? ? B G 42 O6 ? ? ? 1_555 B U 49 N3 ? ? B G 42 B U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog126 hydrog ? ? B C 43 N3 ? ? ? 1_555 B G 48 N1 ? ? B C 43 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B C 43 N4 ? ? ? 1_555 B G 48 O6 ? ? B C 43 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B C 43 O2 ? ? ? 1_555 B G 48 N2 ? ? B C 43 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B G 44 N2 ? ? ? 1_555 B A 47 N7 ? ? B G 44 B A 47 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? Y HOH . ? A HOH 201 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Y HOH . ? A HOH 203 ? 10_556 90.0 ? 2 O ? Y HOH . ? A HOH 201 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Y HOH . ? A HOH 204 ? 10_556 88.5 ? 3 O ? Y HOH . ? A HOH 203 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Y HOH . ? A HOH 204 ? 10_556 90.3 ? 4 O ? Y HOH . ? A HOH 201 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 204 ? 1_555 91.7 ? 5 O ? Y HOH . ? A HOH 203 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 204 ? 1_555 87.3 ? 6 O ? Y HOH . ? A HOH 204 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 204 ? 1_555 177.5 ? 7 O ? Y HOH . ? A HOH 201 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 206 ? 1_555 87.4 ? 8 O ? Y HOH . ? A HOH 203 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 206 ? 1_555 177.2 ? 9 O ? Y HOH . ? A HOH 204 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 206 ? 1_555 90.3 ? 10 O ? Z HOH . ? B HOH 204 ? 1_555 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 206 ? 1_555 92.2 ? 11 O ? Y HOH . ? A HOH 201 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 213 ? 1_555 179.0 ? 12 O ? Y HOH . ? A HOH 203 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 213 ? 1_555 90.7 ? 13 O ? Y HOH . ? A HOH 204 ? 10_556 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 213 ? 1_555 92.2 ? 14 O ? Z HOH . ? B HOH 204 ? 1_555 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 213 ? 1_555 87.6 ? 15 O ? Z HOH . ? B HOH 206 ? 1_555 MG ? X MG . ? B MG 118 ? 1_555 O ? Z HOH . ? B HOH 213 ? 1_555 92.0 ? 16 O ? Y HOH . ? A HOH 202 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Y HOH . ? A HOH 205 ? 6_554 92.9 ? 17 O ? Y HOH . ? A HOH 202 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 201 ? 1_555 176.9 ? 18 O ? Y HOH . ? A HOH 205 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 201 ? 1_555 86.2 ? 19 O ? Y HOH . ? A HOH 202 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 203 ? 6_554 88.4 ? 20 O ? Y HOH . ? A HOH 205 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 203 ? 6_554 93.0 ? 21 O ? Z HOH . ? B HOH 201 ? 1_555 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 203 ? 6_554 88.7 ? 22 O ? Y HOH . ? A HOH 202 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 207 ? 1_555 90.8 ? 23 O ? Y HOH . ? A HOH 205 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 207 ? 1_555 87.9 ? 24 O ? Z HOH . ? B HOH 201 ? 1_555 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 207 ? 1_555 92.2 ? 25 O ? Z HOH . ? B HOH 203 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 207 ? 1_555 178.8 ? 26 O ? Y HOH . ? A HOH 202 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 208 ? 1_555 89.0 ? 27 O ? Y HOH . ? A HOH 205 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 208 ? 1_555 175.8 ? 28 O ? Z HOH . ? B HOH 201 ? 1_555 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 208 ? 1_555 92.1 ? 29 O ? Z HOH . ? B HOH 203 ? 6_554 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 208 ? 1_555 90.8 ? 30 O ? Z HOH . ? B HOH 207 ? 1_555 MG ? V MG . ? B MG 116 ? 1_555 O ? Z HOH . ? B HOH 208 ? 1_555 88.3 ? 31 O ? Z HOH . ? B HOH 202 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 205 ? 1_555 178.4 ? 32 O ? Z HOH . ? B HOH 202 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 209 ? 1_555 90.4 ? 33 O ? Z HOH . ? B HOH 205 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 209 ? 1_555 91.2 ? 34 O ? Z HOH . ? B HOH 202 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 210 ? 1_555 90.7 ? 35 O ? Z HOH . ? B HOH 205 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 210 ? 1_555 88.9 ? 36 O ? Z HOH . ? B HOH 209 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 210 ? 1_555 92.9 ? 37 O ? Z HOH . ? B HOH 202 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 211 ? 1_555 90.4 ? 38 O ? Z HOH . ? B HOH 205 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 211 ? 1_555 89.9 ? 39 O ? Z HOH . ? B HOH 209 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 211 ? 1_555 87.7 ? 40 O ? Z HOH . ? B HOH 210 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 211 ? 1_555 178.7 ? 41 O ? Z HOH . ? B HOH 202 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 212 ? 1_555 90.7 ? 42 O ? Z HOH . ? B HOH 205 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 212 ? 1_555 87.7 ? 43 O ? Z HOH . ? B HOH 209 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 212 ? 1_555 178.2 ? 44 O ? Z HOH . ? B HOH 210 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 212 ? 1_555 88.5 ? 45 O ? Z HOH . ? B HOH 211 ? 1_555 MG ? W MG . ? B MG 117 ? 1_555 O ? Z HOH . ? B HOH 212 ? 1_555 90.9 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 A _pdbx_validate_close_contact.auth_seq_id_1 15 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 "O2'" _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 A _pdbx_validate_close_contact.auth_seq_id_2 14 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.90 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" B G 3 ? ? "C3'" B G 3 ? ? "O3'" B G 3 ? ? 130.55 113.70 16.85 1.60 N 2 1 "O5'" B A 21 ? ? P B A 21 ? ? OP1 B A 21 ? ? 118.54 110.70 7.84 1.20 N 3 1 "C2'" B U 25 ? ? "C3'" B U 25 ? ? "O3'" B U 25 ? ? 123.54 113.70 9.84 1.60 N 4 1 "O5'" B U 60 ? ? P B U 60 ? ? OP2 B U 60 ? ? 118.74 110.70 8.04 1.20 N # _phasing.method MR # _pdbx_entry_details.entry_id 7JNH _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A A 17 ? A A 17 2 1 Y 1 A A 18 ? A A 18 3 1 Y 1 A A 19 ? A A 19 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CCC PC P N S 73 CCC O1C O N N 74 CCC O2C O N N 75 CCC P P N N 76 CCC OP1 O N N 77 CCC OP2 O N N 78 CCC OP3 O N N 79 CCC "O5'" O N N 80 CCC "C5'" C N N 81 CCC "C4'" C N R 82 CCC "O4'" O N N 83 CCC "C3'" C N R 84 CCC "O3'" O N N 85 CCC "C2'" C N R 86 CCC "O2'" O N N 87 CCC "C1'" C N R 88 CCC N1 N N N 89 CCC C2 C N N 90 CCC O2 O N N 91 CCC N3 N N N 92 CCC C4 C N N 93 CCC N4 N N N 94 CCC C5 C N N 95 CCC C6 C N N 96 CCC HOC2 H N N 97 CCC HOP2 H N N 98 CCC HOP3 H N N 99 CCC "H5'" H N N 100 CCC "H5''" H N N 101 CCC "H4'" H N N 102 CCC "H3'" H N N 103 CCC "H2'" H N N 104 CCC "H1'" H N N 105 CCC H41 H N N 106 CCC H42 H N N 107 CCC H5 H N N 108 CCC H6 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 HOH O O N N 148 HOH H1 H N N 149 HOH H2 H N N 150 MG MG MG N N 151 NCO CO CO N N 152 NCO N1 N N N 153 NCO N2 N N N 154 NCO N3 N N N 155 NCO N4 N N N 156 NCO N5 N N N 157 NCO N6 N N N 158 NCO HN11 H N N 159 NCO HN12 H N N 160 NCO HN13 H N N 161 NCO HN21 H N N 162 NCO HN22 H N N 163 NCO HN23 H N N 164 NCO HN31 H N N 165 NCO HN32 H N N 166 NCO HN33 H N N 167 NCO HN41 H N N 168 NCO HN42 H N N 169 NCO HN43 H N N 170 NCO HN51 H N N 171 NCO HN52 H N N 172 NCO HN53 H N N 173 NCO HN61 H N N 174 NCO HN62 H N N 175 NCO HN63 H N N 176 SPD N1 N N N 177 SPD C2 C N N 178 SPD C3 C N N 179 SPD C4 C N N 180 SPD C5 C N N 181 SPD N6 N N N 182 SPD C7 C N N 183 SPD C8 C N N 184 SPD C9 C N N 185 SPD N10 N N N 186 SPD HN11 H N N 187 SPD HN12 H N N 188 SPD H21 H N N 189 SPD H22 H N N 190 SPD H31 H N N 191 SPD H32 H N N 192 SPD H41 H N N 193 SPD H42 H N N 194 SPD H51 H N N 195 SPD H52 H N N 196 SPD HN6 H N N 197 SPD H71 H N N 198 SPD H72 H N N 199 SPD H81 H N N 200 SPD H82 H N N 201 SPD H91 H N N 202 SPD H92 H N N 203 SPD H101 H N N 204 SPD H102 H N N 205 SR SR SR N N 206 U OP3 O N N 207 U P P N N 208 U OP1 O N N 209 U OP2 O N N 210 U "O5'" O N N 211 U "C5'" C N N 212 U "C4'" C N R 213 U "O4'" O N N 214 U "C3'" C N S 215 U "O3'" O N N 216 U "C2'" C N R 217 U "O2'" O N N 218 U "C1'" C N R 219 U N1 N N N 220 U C2 C N N 221 U O2 O N N 222 U N3 N N N 223 U C4 C N N 224 U O4 O N N 225 U C5 C N N 226 U C6 C N N 227 U HOP3 H N N 228 U HOP2 H N N 229 U "H5'" H N N 230 U "H5''" H N N 231 U "H4'" H N N 232 U "H3'" H N N 233 U "HO3'" H N N 234 U "H2'" H N N 235 U "HO2'" H N N 236 U "H1'" H N N 237 U H3 H N N 238 U H5 H N N 239 U H6 H N N 240 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CCC PC O1C doub N N 76 CCC PC O2C sing N N 77 CCC PC "O3'" sing N N 78 CCC PC "O2'" sing N N 79 CCC O2C HOC2 sing N N 80 CCC P OP1 doub N N 81 CCC P OP2 sing N N 82 CCC P OP3 sing N N 83 CCC P "O5'" sing N N 84 CCC OP2 HOP2 sing N N 85 CCC OP3 HOP3 sing N N 86 CCC "O5'" "C5'" sing N N 87 CCC "C5'" "C4'" sing N N 88 CCC "C5'" "H5'" sing N N 89 CCC "C5'" "H5''" sing N N 90 CCC "C4'" "O4'" sing N N 91 CCC "C4'" "C3'" sing N N 92 CCC "C4'" "H4'" sing N N 93 CCC "O4'" "C1'" sing N N 94 CCC "C3'" "O3'" sing N N 95 CCC "C3'" "C2'" sing N N 96 CCC "C3'" "H3'" sing N N 97 CCC "C2'" "O2'" sing N N 98 CCC "C2'" "C1'" sing N N 99 CCC "C2'" "H2'" sing N N 100 CCC "C1'" N1 sing N N 101 CCC "C1'" "H1'" sing N N 102 CCC N1 C2 sing N N 103 CCC N1 C6 sing N N 104 CCC C2 O2 doub N N 105 CCC C2 N3 sing N N 106 CCC N3 C4 doub N N 107 CCC C4 N4 sing N N 108 CCC C4 C5 sing N N 109 CCC N4 H41 sing N N 110 CCC N4 H42 sing N N 111 CCC C5 C6 doub N N 112 CCC C5 H5 sing N N 113 CCC C6 H6 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 HOH O H1 sing N N 155 HOH O H2 sing N N 156 NCO CO N1 sing N N 157 NCO CO N2 sing N N 158 NCO CO N3 sing N N 159 NCO CO N4 sing N N 160 NCO CO N5 sing N N 161 NCO CO N6 sing N N 162 NCO N1 HN11 sing N N 163 NCO N1 HN12 sing N N 164 NCO N1 HN13 sing N N 165 NCO N2 HN21 sing N N 166 NCO N2 HN22 sing N N 167 NCO N2 HN23 sing N N 168 NCO N3 HN31 sing N N 169 NCO N3 HN32 sing N N 170 NCO N3 HN33 sing N N 171 NCO N4 HN41 sing N N 172 NCO N4 HN42 sing N N 173 NCO N4 HN43 sing N N 174 NCO N5 HN51 sing N N 175 NCO N5 HN52 sing N N 176 NCO N5 HN53 sing N N 177 NCO N6 HN61 sing N N 178 NCO N6 HN62 sing N N 179 NCO N6 HN63 sing N N 180 SPD N1 C2 sing N N 181 SPD N1 HN11 sing N N 182 SPD N1 HN12 sing N N 183 SPD C2 C3 sing N N 184 SPD C2 H21 sing N N 185 SPD C2 H22 sing N N 186 SPD C3 C4 sing N N 187 SPD C3 H31 sing N N 188 SPD C3 H32 sing N N 189 SPD C4 C5 sing N N 190 SPD C4 H41 sing N N 191 SPD C4 H42 sing N N 192 SPD C5 N6 sing N N 193 SPD C5 H51 sing N N 194 SPD C5 H52 sing N N 195 SPD N6 C7 sing N N 196 SPD N6 HN6 sing N N 197 SPD C7 C8 sing N N 198 SPD C7 H71 sing N N 199 SPD C7 H72 sing N N 200 SPD C8 C9 sing N N 201 SPD C8 H81 sing N N 202 SPD C8 H82 sing N N 203 SPD C9 N10 sing N N 204 SPD C9 H91 sing N N 205 SPD C9 H92 sing N N 206 SPD N10 H101 sing N N 207 SPD N10 H102 sing N N 208 U OP3 P sing N N 209 U OP3 HOP3 sing N N 210 U P OP1 doub N N 211 U P OP2 sing N N 212 U P "O5'" sing N N 213 U OP2 HOP2 sing N N 214 U "O5'" "C5'" sing N N 215 U "C5'" "C4'" sing N N 216 U "C5'" "H5'" sing N N 217 U "C5'" "H5''" sing N N 218 U "C4'" "O4'" sing N N 219 U "C4'" "C3'" sing N N 220 U "C4'" "H4'" sing N N 221 U "O4'" "C1'" sing N N 222 U "C3'" "O3'" sing N N 223 U "C3'" "C2'" sing N N 224 U "C3'" "H3'" sing N N 225 U "O3'" "HO3'" sing N N 226 U "C2'" "O2'" sing N N 227 U "C2'" "C1'" sing N N 228 U "C2'" "H2'" sing N N 229 U "O2'" "HO2'" sing N N 230 U "C1'" N1 sing N N 231 U "C1'" "H1'" sing N N 232 U N1 C2 sing N N 233 U N1 C6 sing N N 234 U C2 O2 doub N N 235 U C2 N3 sing N N 236 U N3 C4 sing N N 237 U N3 H3 sing N N 238 U C4 O4 doub N N 239 U C4 C5 sing N N 240 U C5 C6 doub N N 241 U C5 H5 sing N N 242 U C6 H6 sing N N 243 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7JNH 'double helix' 7JNH 'a-form double helix' 7JNH 'hairpin loop' 7JNH 'bulge loop' 7JNH 'mismatched base pair' 7JNH 'internal loop' 7JNH 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B CCC 86 1_555 0.329 -0.052 0.128 -5.162 -9.079 -6.275 1 B_G1:CCC86_B B 1 ? B 86 ? 19 1 1 B G 2 1_555 B C 85 1_555 0.112 0.001 0.151 -1.576 -14.707 -12.697 2 B_G2:C85_B B 2 ? B 85 ? 19 1 1 B G 3 1_555 B C 84 1_555 -0.089 -0.067 0.457 -7.622 -12.745 -1.615 3 B_G3:C84_B B 3 ? B 84 ? 19 1 1 B C 4 1_555 B G 83 1_555 -0.272 -0.138 0.279 1.575 -11.810 -4.600 4 B_C4:G83_B B 4 ? B 83 ? 19 1 1 B U 5 1_555 B A 82 1_555 -0.036 -0.074 0.683 -7.559 -9.363 -0.477 5 B_U5:A82_B B 5 ? B 82 ? 20 1 1 B G 6 1_555 B C 81 1_555 0.062 -0.169 0.215 -0.308 -13.093 0.794 6 B_G6:C81_B B 6 ? B 81 ? 19 1 1 B A 7 1_555 B U 80 1_555 0.009 -0.033 0.200 1.687 -10.870 3.459 7 B_A7:U80_B B 7 ? B 80 ? 20 1 1 B G 8 1_555 B C 79 1_555 -0.015 -0.278 0.299 -3.330 -14.740 -4.482 8 B_G8:C79_B B 8 ? B 79 ? 19 1 1 A A 11 1_555 B U 78 1_555 -0.093 -0.074 0.051 -2.492 -14.786 10.285 9 A_A11:U78_B A 11 ? B 78 ? 20 1 1 B G 24 1_555 B C 64 1_555 -0.481 -0.077 0.455 -0.070 -10.079 -4.271 10 B_G24:C64_B B 24 ? B 64 ? 19 1 1 B U 25 1_555 A A 24 1_555 -1.209 3.843 1.128 -9.529 -21.142 -74.666 11 B_U25:A24_A B 25 ? A 24 ? 23 3 1 A A 25 1_555 B U 63 1_555 -0.634 -0.100 0.004 -2.766 -8.590 6.236 12 A_A25:U63_B A 25 ? B 63 ? 20 1 1 A A 26 1_555 B U 62 1_555 -0.429 -0.103 -0.234 -16.644 -5.798 2.206 13 A_A26:U62_B A 26 ? B 62 ? 20 1 1 A A 27 1_555 B U 61 1_555 -0.410 -0.038 -0.149 -17.326 -9.772 5.965 14 A_A27:U61_B A 27 ? B 61 ? 20 1 1 A A 28 1_555 B U 60 1_555 -0.441 -0.170 -0.154 -13.094 -3.035 -3.789 15 A_A28:U60_B A 28 ? B 60 ? 20 1 1 B G 33 1_555 B C 59 1_555 -0.566 -0.439 -0.194 -8.750 0.668 -4.903 16 B_G33:C59_B B 33 ? B 59 ? 19 1 1 B A 34 1_555 B U 58 1_555 0.001 -0.185 -0.231 -7.893 -5.932 -7.639 17 B_A34:U58_B B 34 ? B 58 ? 20 1 1 B G 35 1_555 B C 57 1_555 -0.050 -0.101 0.053 -4.652 -6.092 -0.705 18 B_G35:C57_B B 35 ? B 57 ? 19 1 1 B G 36 1_555 B U 55 1_555 -2.481 -0.521 0.558 13.039 -7.773 -10.993 19 B_G36:U55_B B 36 ? B 55 ? 28 1 1 B C 37 1_555 B G 54 1_555 0.240 -0.177 0.552 3.299 -12.951 -6.189 20 B_C37:G54_B B 37 ? B 54 ? 19 1 1 B A 38 1_555 B U 53 1_555 -0.476 -0.184 0.574 0.573 -6.971 1.532 21 B_A38:U53_B B 38 ? B 53 ? 20 1 1 B G 39 1_555 B C 52 1_555 0.083 -0.169 0.276 2.713 -3.230 -3.694 22 B_G39:C52_B B 39 ? B 52 ? 19 1 1 B C 40 1_555 B G 51 1_555 0.509 -0.339 0.351 -2.341 -4.508 -1.388 23 B_C40:G51_B B 40 ? B 51 ? 19 1 1 B G 41 1_555 B C 50 1_555 -0.110 -0.198 0.014 -4.079 -13.873 -2.700 24 B_G41:C50_B B 41 ? B 50 ? 19 1 1 B G 42 1_555 B U 49 1_555 -2.219 -0.547 0.287 2.572 -9.666 8.205 25 B_G42:U49_B B 42 ? B 49 ? 28 1 1 B C 43 1_555 B G 48 1_555 0.389 -0.204 0.059 11.068 -0.182 -1.617 26 B_C43:G48_B B 43 ? B 48 ? 19 1 1 B G 44 1_555 B A 47 1_555 7.715 -4.690 0.399 15.322 2.764 -37.791 27 B_G44:A47_B B 44 ? B 47 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B CCC 86 1_555 B G 2 1_555 B C 85 1_555 -0.353 -1.667 3.262 -0.190 5.342 29.140 -4.337 0.652 2.919 10.506 0.373 29.616 1 BB_G1G2:C85CCC86_BB B 1 ? B 86 ? B 2 ? B 85 ? 1 B G 2 1_555 B C 85 1_555 B G 3 1_555 B C 84 1_555 1.007 -2.548 3.182 -0.410 3.848 31.449 -5.324 -1.914 2.845 7.066 0.753 31.680 2 BB_G2G3:C84C85_BB B 2 ? B 85 ? B 3 ? B 84 ? 1 B G 3 1_555 B C 84 1_555 B C 4 1_555 B G 83 1_555 -0.876 -2.051 2.902 0.357 -1.289 28.387 -3.911 1.859 2.979 -2.626 -0.728 28.418 3 BB_G3C4:G83C84_BB B 3 ? B 84 ? B 4 ? B 83 ? 1 B C 4 1_555 B G 83 1_555 B U 5 1_555 B A 82 1_555 0.084 -1.819 3.373 -2.047 6.786 32.875 -4.229 -0.472 2.939 11.819 3.566 33.610 4 BB_C4U5:A82G83_BB B 4 ? B 83 ? B 5 ? B 82 ? 1 B U 5 1_555 B A 82 1_555 B G 6 1_555 B C 81 1_555 0.318 -1.491 2.975 3.384 2.476 32.805 -2.996 -0.046 2.876 4.361 -5.961 33.065 5 BB_U5G6:C81A82_BB B 5 ? B 82 ? B 6 ? B 81 ? 1 B G 6 1_555 B C 81 1_555 B A 7 1_555 B U 80 1_555 -0.291 -1.281 3.060 0.623 4.807 29.671 -3.361 0.676 2.816 9.309 -1.206 30.055 6 BB_G6A7:U80C81_BB B 6 ? B 81 ? B 7 ? B 80 ? 1 B A 7 1_555 B U 80 1_555 B G 8 1_555 B C 79 1_555 0.105 -1.608 3.319 0.914 8.064 36.171 -3.574 -0.047 2.908 12.790 -1.450 37.041 7 BB_A7G8:C79U80_BB B 7 ? B 80 ? B 8 ? B 79 ? 1 B G 8 1_555 B C 79 1_555 A A 11 1_555 B U 78 1_555 -5.473 -0.637 3.854 13.794 1.033 81.715 -0.510 4.505 3.058 0.784 -10.476 82.674 8 BA_G8A11:U78C79_BB B 8 ? B 79 ? A 11 ? B 78 ? 1 B G 24 1_555 B C 64 1_555 B U 25 1_555 A A 24 1_555 -6.855 -1.774 1.312 5.713 7.199 18.047 -5.017 19.484 -1.374 21.255 -16.866 20.235 9 BB_G24U25:A24C64_AB B 24 ? B 64 ? B 25 ? A 24 ? 1 B U 25 1_555 A A 24 1_555 A A 25 1_555 B U 63 1_555 1.048 -3.457 2.954 4.084 2.518 63.237 -3.388 -0.837 2.884 2.398 -3.889 63.400 10 BA_U25A25:U63A24_BA B 25 ? A 24 ? A 25 ? B 63 ? 1 A A 25 1_555 B U 63 1_555 A A 26 1_555 B U 62 1_555 -0.102 -2.401 3.756 2.056 0.313 26.494 -5.318 0.841 3.710 0.682 -4.477 26.574 11 AA_A25A26:U62U63_BB A 25 ? B 63 ? A 26 ? B 62 ? 1 A A 26 1_555 B U 62 1_555 A A 27 1_555 B U 61 1_555 0.601 -2.566 3.248 3.003 5.701 29.652 -5.972 -0.587 2.764 10.978 -5.783 30.329 12 AA_A26A27:U61U62_BB A 26 ? B 62 ? A 27 ? B 61 ? 1 A A 27 1_555 B U 61 1_555 A A 28 1_555 B U 60 1_555 -0.423 -2.142 3.242 0.955 4.025 31.861 -4.556 0.926 2.943 7.294 -1.730 32.122 13 AA_A27A28:U60U61_BB A 27 ? B 61 ? A 28 ? B 60 ? 1 A A 28 1_555 B U 60 1_555 B G 33 1_555 B C 59 1_555 -1.211 -2.323 3.150 2.408 -0.691 37.684 -3.504 2.168 3.110 -1.068 -3.723 37.764 14 AB_A28G33:C59U60_BB A 28 ? B 60 ? B 33 ? B 59 ? 1 B G 33 1_555 B C 59 1_555 B A 34 1_555 B U 58 1_555 -0.344 -2.032 3.413 2.337 -2.420 29.846 -3.393 1.174 3.526 -4.679 -4.519 30.031 15 BB_G33A34:U58C59_BB B 33 ? B 59 ? B 34 ? B 58 ? 1 B A 34 1_555 B U 58 1_555 B G 35 1_555 B C 57 1_555 1.014 -1.903 3.225 0.737 -1.003 33.933 -3.099 -1.619 3.299 -1.717 -1.263 33.955 16 BB_A34G35:C57U58_BB B 34 ? B 58 ? B 35 ? B 57 ? 1 B G 35 1_555 B C 57 1_555 B G 36 1_555 B U 55 1_555 3.346 -1.365 2.695 -7.789 4.906 45.780 -2.020 -4.696 1.983 6.232 9.894 46.648 17 BB_G35G36:U55C57_BB B 35 ? B 57 ? B 36 ? B 55 ? 1 B G 36 1_555 B U 55 1_555 B C 37 1_555 B G 54 1_555 -0.035 -1.935 3.404 -2.459 4.293 47.025 -2.768 -0.160 3.224 5.362 3.071 47.269 18 BB_G36C37:G54U55_BB B 36 ? B 55 ? B 37 ? B 54 ? 1 B C 37 1_555 B G 54 1_555 B A 38 1_555 B U 53 1_555 -0.015 -2.517 3.000 -1.718 6.595 23.050 -7.773 -0.413 2.200 16.058 4.184 24.023 19 BB_C37A38:U53G54_BB B 37 ? B 54 ? B 38 ? B 53 ? 1 B A 38 1_555 B U 53 1_555 B G 39 1_555 B C 52 1_555 -0.665 -1.962 2.994 -0.545 3.643 32.421 -4.052 1.099 2.774 6.498 0.972 32.624 20 BB_A38G39:C52U53_BB B 38 ? B 53 ? B 39 ? B 52 ? 1 B G 39 1_555 B C 52 1_555 B C 40 1_555 B G 51 1_555 -0.185 -1.456 3.302 -1.138 6.645 37.134 -3.088 0.142 3.011 10.330 1.770 37.720 21 BB_G39C40:G51C52_BB B 39 ? B 52 ? B 40 ? B 51 ? 1 B C 40 1_555 B G 51 1_555 B G 41 1_555 B C 50 1_555 -0.227 -1.847 3.099 2.550 7.511 27.283 -5.270 0.974 2.481 15.513 -5.267 28.392 22 BB_C40G41:C50G51_BB B 40 ? B 51 ? B 41 ? B 50 ? 1 B G 41 1_555 B C 50 1_555 B G 42 1_555 B U 49 1_555 0.532 -1.446 2.740 -5.972 12.179 28.131 -4.399 -1.828 1.825 23.413 11.479 31.171 23 BB_G41G42:U49C50_BB B 41 ? B 50 ? B 42 ? B 49 ? 1 B G 42 1_555 B U 49 1_555 B C 43 1_555 B G 48 1_555 -0.690 -1.076 3.056 -2.988 14.473 43.652 -2.494 0.653 2.631 18.833 3.887 45.969 24 BB_G42C43:G48U49_BB B 42 ? B 49 ? B 43 ? B 48 ? 1 B C 43 1_555 B G 48 1_555 B G 44 1_555 B A 47 1_555 -3.517 -1.789 3.329 5.451 13.155 51.305 -2.761 4.249 2.474 14.868 -6.161 53.115 25 BB_C43G44:A47G48_BB B 43 ? B 48 ? B 44 ? B 47 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' P01CA16038 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P01GM022778 3 'Damon Runyon Cancer Research Foundation' 'United States' ? 4 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details dENE # _atom_sites.entry_id 7JNH _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.010641 _atom_sites.fract_transf_matrix[1][2] 0.006144 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012288 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004946 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CO MG N O P SR # loop_