HEADER DNA BINDING PROTEIN 05-AUG-20 7JNP TITLE MTRR BOUND TO THE RPOH OPERATOR FROM NEISSERIA GONORRHOEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR MTRR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MULTIPLE TRANSFERRABLE RESISTANCE REGULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*TP*AP*CP*AP*TP*AP*CP*AP*AP*CP*CP*AP*CP*GP*TP*AP*TP*GP*TP*A)- COMPND 9 3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*TP*AP*CP*AP*TP*AP*CP*GP*TP*GP*GP*TP*TP*GP*TP*AP*TP*GP*TP*AP*A)- COMPND 15 3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: MTRR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 9 ORGANISM_TAXID: 485; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 14 ORGANISM_TAXID: 485; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETR FAMILY, TRANSCRIPTION REGULATOR, HELIX-TURN-HELIX MOTIF, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.A.BEGGS,W.M.SHAFER,R.G.BRENNAN REVDAT 4 18-OCT-23 7JNP 1 REMARK REVDAT 3 28-APR-21 7JNP 1 JRNL REVDAT 2 21-APR-21 7JNP 1 JRNL REVDAT 1 24-MAR-21 7JNP 0 JRNL AUTH G.A.BEGGS,J.C.AYALA,L.G.KAVANAUGH,T.D.READ,G.M.HOOKS, JRNL AUTH 2 M.A.SCHUMACHER,W.M.SHAFER,R.G.BRENNAN JRNL TITL STRUCTURES OF NEISSERIA GONORRHOEAE MTRR-OPERATOR COMPLEXES JRNL TITL 2 REVEAL MOLECULAR MECHANISMS OF DNA RECOGNITION AND JRNL TITL 3 ANTIBIOTIC RESISTANCE-CONFERRING CLINICAL MUTATIONS. JRNL REF NUCLEIC ACIDS RES. V. 49 4155 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33784401 JRNL DOI 10.1093/NAR/GKAB213 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.6080 - 6.1111 0.98 1307 146 0.1963 0.2727 REMARK 3 2 6.1111 - 4.8518 1.00 1276 142 0.1932 0.2043 REMARK 3 3 4.8518 - 4.2389 0.99 1263 145 0.1538 0.1967 REMARK 3 4 4.2389 - 3.8515 1.00 1281 140 0.1660 0.2046 REMARK 3 5 3.8515 - 3.5755 0.99 1276 143 0.1785 0.2547 REMARK 3 6 3.5755 - 3.3647 0.99 1253 139 0.1930 0.2518 REMARK 3 7 3.3647 - 3.1962 0.99 1252 141 0.2032 0.2656 REMARK 3 8 3.1962 - 3.0571 0.99 1263 140 0.2450 0.3931 REMARK 3 9 3.0571 - 2.9395 1.00 1263 141 0.2466 0.2909 REMARK 3 10 2.9395 - 2.8380 0.99 1243 138 0.2371 0.3046 REMARK 3 11 2.8380 - 2.7493 1.00 1261 139 0.2491 0.3471 REMARK 3 12 2.7493 - 2.6707 1.00 1272 144 0.2572 0.3040 REMARK 3 13 2.6707 - 2.6004 0.97 1208 133 0.2744 0.3624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 8 THROUGH 209) REMARK 3 ORIGIN FOR THE GROUP (A): -48.1715 -6.4903 -11.3221 REMARK 3 T TENSOR REMARK 3 T11: 0.3603 T22: 0.3302 REMARK 3 T33: 0.3549 T12: -0.0087 REMARK 3 T13: -0.0151 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 3.2543 L22: 1.3340 REMARK 3 L33: 0.6087 L12: -1.0711 REMARK 3 L13: -0.5553 L23: 0.4653 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.3465 S13: 0.0438 REMARK 3 S21: -0.2492 S22: -0.1091 S23: 0.1520 REMARK 3 S31: -0.0983 S32: -0.0275 S33: 0.0456 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 21) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4401 -6.2548 1.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.3784 T22: 0.5922 REMARK 3 T33: 0.4791 T12: 0.0153 REMARK 3 T13: -0.0270 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.2822 L22: 1.6500 REMARK 3 L33: 6.4916 L12: -0.8419 REMARK 3 L13: 0.7561 L23: 1.5137 REMARK 3 S TENSOR REMARK 3 S11: 0.4138 S12: -0.0196 S13: -0.0880 REMARK 3 S21: 0.1472 S22: 0.5941 S23: -0.3070 REMARK 3 S31: 0.4158 S32: 0.8214 S33: -0.7719 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 21) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4392 -6.3466 1.8232 REMARK 3 T TENSOR REMARK 3 T11: 0.3456 T22: 0.6467 REMARK 3 T33: 0.4686 T12: 0.0046 REMARK 3 T13: 0.0358 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.0211 L22: 1.4986 REMARK 3 L33: 7.3762 L12: 0.8730 REMARK 3 L13: -0.4021 L23: 1.4328 REMARK 3 S TENSOR REMARK 3 S11: 0.3957 S12: 0.1992 S13: -0.0595 REMARK 3 S21: -0.0788 S22: 0.4728 S23: -0.2179 REMARK 3 S31: -0.2776 S32: 0.6332 S33: -0.7158 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 9 THROUGH 209) REMARK 3 ORIGIN FOR THE GROUP (A): -48.2182 -6.2995 11.3024 REMARK 3 T TENSOR REMARK 3 T11: 0.3567 T22: 0.3137 REMARK 3 T33: 0.3545 T12: 0.0170 REMARK 3 T13: 0.0228 T23: 0.0723 REMARK 3 L TENSOR REMARK 3 L11: 3.5858 L22: 1.2880 REMARK 3 L33: 0.6150 L12: 1.0536 REMARK 3 L13: 0.7549 L23: 0.5148 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.3831 S13: -0.0402 REMARK 3 S21: 0.1984 S22: -0.0402 S23: 0.1573 REMARK 3 S31: 0.0911 S32: -0.0498 S33: 0.0313 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000249667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18276 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6OF0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM CALCIUM ACETATE, 100 MM TRIS REMARK 280 -HCL PH 7.5, 27% POLYETHYLENE GLYCOL MW-8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.49500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.06250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.49500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.06250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 LYS A 210 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 9 CG CD1 CD2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 73 CG1 CG2 CD1 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 121 CG CD OE1 NE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 SER A 183 OG REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 LEU B 9 CG CD1 CD2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLN B 121 CG CD OE1 NE2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DC C 12 O HOH C 201 2.18 REMARK 500 OD1 ASP B 79 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 42 -159.54 -126.04 REMARK 500 ASN A 53 -165.10 -166.23 REMARK 500 VAL B 42 -161.12 -127.68 REMARK 500 ASN B 53 -168.49 -166.10 REMARK 500 ASP B 79 49.14 -78.76 REMARK 500 ALA B 80 104.89 -51.66 REMARK 500 LEU B 112 46.22 -98.30 REMARK 500 PHE B 113 -52.84 -159.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 30 O REMARK 620 2 GLU A 35 OE1 115.9 REMARK 620 3 GLU A 35 OE2 77.9 48.0 REMARK 620 4 HOH A 417 O 80.7 154.3 156.6 REMARK 620 5 HOH C 211 O 68.7 115.5 75.3 88.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 39 O REMARK 620 2 SER B 101 O 76.9 REMARK 620 3 HOH B 413 O 73.9 3.6 REMARK 620 4 HOH B 421 O 74.1 2.9 1.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 101 O REMARK 620 2 HOH A 413 O 68.2 REMARK 620 3 HOH A 414 O 71.8 3.6 REMARK 620 4 ALA B 39 O 72.1 4.8 2.6 REMARK 620 5 HOH B 422 O 68.2 0.5 3.6 4.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 205 O REMARK 620 2 HOH D 210 O 138.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 211 O REMARK 620 2 ARG B 30 O 146.3 REMARK 620 3 GLU B 35 OE2 98.8 95.0 REMARK 620 4 HOH B 404 O 109.8 53.8 58.2 REMARK 620 5 HOH B 418 O 82.0 68.7 142.9 86.4 REMARK 620 N 1 2 3 4 DBREF 7JNP A 1 210 UNP P39897 MTRR_NEIGO 1 210 DBREF 7JNP C 1 21 PDB 7JNP 7JNP 1 21 DBREF 7JNP D 1 21 PDB 7JNP 7JNP 1 21 DBREF 7JNP B 1 210 UNP P39897 MTRR_NEIGO 1 210 SEQADV 7JNP SER A -2 UNP P39897 EXPRESSION TAG SEQADV 7JNP ASN A -1 UNP P39897 EXPRESSION TAG SEQADV 7JNP ALA A 0 UNP P39897 EXPRESSION TAG SEQADV 7JNP SER B -2 UNP P39897 EXPRESSION TAG SEQADV 7JNP ASN B -1 UNP P39897 EXPRESSION TAG SEQADV 7JNP ALA B 0 UNP P39897 EXPRESSION TAG SEQRES 1 A 213 SER ASN ALA MET ARG LYS THR LYS THR GLU ALA LEU LYS SEQRES 2 A 213 THR LYS GLU HIS LEU MET LEU ALA ALA LEU GLU THR PHE SEQRES 3 A 213 TYR ARG LYS GLY ILE ALA ARG THR SER LEU ASN GLU ILE SEQRES 4 A 213 ALA GLN ALA ALA GLY VAL THR ARG GLY ALA LEU TYR TRP SEQRES 5 A 213 HIS PHE LYS ASN LYS GLU ASP LEU PHE ASP ALA LEU PHE SEQRES 6 A 213 GLN ARG ILE CYS ASP ASP ILE GLU ASN CYS ILE ALA GLN SEQRES 7 A 213 ASP ALA ALA ASP ALA GLU GLY GLY SER TRP THR VAL PHE SEQRES 8 A 213 ARG HIS THR LEU LEU HIS PHE PHE GLU ARG LEU GLN SER SEQRES 9 A 213 ASN ASP ILE HIS TYR LYS PHE HIS ASN ILE LEU PHE LEU SEQRES 10 A 213 LYS CYS GLU HIS THR GLU GLN ASN ALA ALA VAL ILE ALA SEQRES 11 A 213 ILE ALA ARG LYS HIS GLN ALA ILE TRP ARG GLU LYS ILE SEQRES 12 A 213 THR ALA VAL LEU THR GLU ALA VAL GLU ASN GLN ASP LEU SEQRES 13 A 213 ALA ASP ASP LEU ASP LYS GLU THR ALA VAL ILE PHE ILE SEQRES 14 A 213 LYS SER THR LEU ASP GLY LEU ILE TRP ARG TRP PHE SER SEQRES 15 A 213 SER GLY GLU SER PHE ASP LEU GLY LYS THR ALA PRO ARG SEQRES 16 A 213 ILE ILE GLY ILE MET MET ASP ASN LEU GLU ASN HIS PRO SEQRES 17 A 213 CYS LEU ARG ARG LYS SEQRES 1 C 21 DT DT DA DC DA DT DA DC DA DA DC DC DA SEQRES 2 C 21 DC DG DT DA DT DG DT DA SEQRES 1 D 21 DT DA DC DA DT DA DC DG DT DG DG DT DT SEQRES 2 D 21 DG DT DA DT DG DT DA DA SEQRES 1 B 213 SER ASN ALA MET ARG LYS THR LYS THR GLU ALA LEU LYS SEQRES 2 B 213 THR LYS GLU HIS LEU MET LEU ALA ALA LEU GLU THR PHE SEQRES 3 B 213 TYR ARG LYS GLY ILE ALA ARG THR SER LEU ASN GLU ILE SEQRES 4 B 213 ALA GLN ALA ALA GLY VAL THR ARG GLY ALA LEU TYR TRP SEQRES 5 B 213 HIS PHE LYS ASN LYS GLU ASP LEU PHE ASP ALA LEU PHE SEQRES 6 B 213 GLN ARG ILE CYS ASP ASP ILE GLU ASN CYS ILE ALA GLN SEQRES 7 B 213 ASP ALA ALA ASP ALA GLU GLY GLY SER TRP THR VAL PHE SEQRES 8 B 213 ARG HIS THR LEU LEU HIS PHE PHE GLU ARG LEU GLN SER SEQRES 9 B 213 ASN ASP ILE HIS TYR LYS PHE HIS ASN ILE LEU PHE LEU SEQRES 10 B 213 LYS CYS GLU HIS THR GLU GLN ASN ALA ALA VAL ILE ALA SEQRES 11 B 213 ILE ALA ARG LYS HIS GLN ALA ILE TRP ARG GLU LYS ILE SEQRES 12 B 213 THR ALA VAL LEU THR GLU ALA VAL GLU ASN GLN ASP LEU SEQRES 13 B 213 ALA ASP ASP LEU ASP LYS GLU THR ALA VAL ILE PHE ILE SEQRES 14 B 213 LYS SER THR LEU ASP GLY LEU ILE TRP ARG TRP PHE SER SEQRES 15 B 213 SER GLY GLU SER PHE ASP LEU GLY LYS THR ALA PRO ARG SEQRES 16 B 213 ILE ILE GLY ILE MET MET ASP ASN LEU GLU ASN HIS PRO SEQRES 17 B 213 CYS LEU ARG ARG LYS HET CA A 301 1 HET CA C 101 1 HET CA C 102 1 HET CA D 101 1 HET CA D 102 1 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HETNAM CA CALCIUM ION FORMUL 5 CA 8(CA 2+) FORMUL 13 HOH *68(H2 O) HELIX 1 AA1 ALA A 8 GLY A 27 1 20 HELIX 2 AA2 SER A 32 ALA A 40 1 9 HELIX 3 AA3 THR A 43 PHE A 51 1 9 HELIX 4 AA4 ASN A 53 ASP A 79 1 27 HELIX 5 AA5 GLY A 83 ASN A 102 1 20 HELIX 6 AA6 ASN A 102 LYS A 115 1 14 HELIX 7 AA7 ASN A 122 GLU A 149 1 28 HELIX 8 AA8 ASP A 158 SER A 180 1 23 HELIX 9 AA9 ASP A 185 HIS A 204 1 20 HELIX 10 AB1 PRO A 205 ARG A 208 5 4 HELIX 11 AB2 LYS B 10 GLY B 27 1 18 HELIX 12 AB3 SER B 32 ALA B 40 1 9 HELIX 13 AB4 THR B 43 PHE B 51 1 9 HELIX 14 AB5 ASN B 53 ASP B 79 1 27 HELIX 15 AB6 GLY B 83 ASN B 102 1 20 HELIX 16 AB7 ASN B 102 LYS B 115 1 14 HELIX 17 AB8 ASN B 122 GLU B 149 1 28 HELIX 18 AB9 ASP B 158 SER B 180 1 23 HELIX 19 AC1 ASP B 185 HIS B 204 1 20 HELIX 20 AC2 PRO B 205 ARG B 208 5 4 LINK O ARG A 30 CA CA A 301 1555 1555 2.43 LINK OE1 GLU A 35 CA CA A 301 1555 1555 2.77 LINK OE2 GLU A 35 CA CA A 301 1555 1555 2.61 LINK O ALA A 39 CA CA B 301 1555 4445 2.51 LINK O SER A 101 CA CA B 303 1555 4445 2.45 LINK CA CA A 301 O HOH A 417 1555 1555 2.76 LINK CA CA A 301 O HOH C 211 1555 1555 2.48 LINK O HOH A 413 CA CA B 303 4455 1555 3.02 LINK O HOH A 414 CA CA B 303 4455 1555 2.46 LINK OP1 DA C 9 CA CA D 101 1555 2555 2.77 LINK CA CA C 101 O HOH D 205 1555 1555 2.58 LINK CA CA C 101 O HOH D 210 1555 1555 2.64 LINK CA CA C 102 O HOH D 207 1555 1555 2.68 LINK O HOH C 206 CA CA D 102 1555 1555 2.73 LINK O HOH D 211 CA CA B 302 1555 1555 2.58 LINK O ARG B 30 CA CA B 302 1555 1555 2.46 LINK OE2 GLU B 35 CA CA B 302 1555 1555 2.44 LINK O ALA B 39 CA CA B 303 1555 1555 2.51 LINK O SER B 101 CA CA B 301 1555 1555 2.56 LINK CA CA B 301 O HOH B 413 1555 1555 2.94 LINK CA CA B 301 O HOH B 421 1555 1555 2.62 LINK CA CA B 302 O HOH B 404 1555 1555 2.49 LINK CA CA B 302 O HOH B 418 1555 1555 2.65 LINK CA CA B 303 O HOH B 422 1555 1555 2.44 CRYST1 150.990 58.125 68.205 90.00 90.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006623 0.000000 -0.000001 0.00000 SCALE2 0.000000 0.017204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014662 0.00000