HEADER VIRUS 07-AUG-20 7JOT TITLE ADENO-ASSOCIATED VIRUS STRAIN AAV7 CAPSID ICOSAHEDRAL STRUCTURE CAVEAT 7JOT RESIDUES ALA A 477 AND LYS A 478 THAT ARE NEXT TO EACH OTHER CAVEAT 2 7JOT IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED. RESIDUES CAVEAT 3 7JOT LYS A 478 AND ASN A 479 THAT ARE NEXT TO EACH OTHER IN THE CAVEAT 4 7JOT SAMPLE SEQUENCE ARE NOT PROPERLY LINKED. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 220-737; COMPND 5 SYNONYM: VP3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS - 7; SOURCE 3 ORGANISM_TAXID: 202812; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS AAV, PARVOVIRUS, PARVOVIRIDAE, ADENO-ASSOCIATED VIRUS, CAPSID, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR E.FIRLAR,S.A.YOST,A.C.MERCER,J.T.KAELBER REVDAT 2 06-MAR-24 7JOT 1 REMARK REVDAT 1 07-OCT-20 7JOT 0 JRNL AUTH E.FIRLAR,S.YOST,A.C.MERCER,J.T.KAELBER JRNL TITL ADENO-ASSOCIATED VIRUS STRAIN AAV7 CAPSID ICOSAHEDRAL JRNL TITL 2 STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOLO, SERIALEM, RELION, COOT, PHENIX, REMARK 3 RELION, RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6U95 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.700 REMARK 3 NUMBER OF PARTICLES : 71811 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7JOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000250976. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ADENO-ASSOCIATED VIRUS - 7 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : WHATMAN #1 FILTER PAPER REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : VIRIONS CONTAINING GFP-ENCODING REMARK 245 SSDNA WERE ASSEMBLED IN TRANSFECTED HEK293T HELPER CELLS. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2430 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 106.40 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 195.11859 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 -120.58731 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 74.52706 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 390.23427 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00342 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 -0.00211 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 315.70379 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 195.11990 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 -120.59073 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 74.52575 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 195.11779 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 -120.58942 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 390.23296 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 390.24684 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 195.11437 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 510.83415 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 74.52706 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 -0.00131 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 390.24342 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 -0.00211 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 74.52917 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 195.12694 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 -120.59073 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 315.70721 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 195.12905 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 -120.58942 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 390.23296 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 390.24696 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 195.11437 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 -120.58731 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 315.71990 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 -0.00131 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00342 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 390.24907 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 74.52917 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 195.11990 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 510.83769 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 315.70721 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 195.11779 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 510.83638 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 390.24684 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 390.24696 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 195.11859 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 510.83415 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 315.71990 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 390.23427 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 390.24342 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 390.24907 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 315.70379 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 195.12694 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 510.83769 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 74.52575 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 195.12905 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 510.83638 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 -0.00700 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00694 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00006 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 74.52006 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 195.12553 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 -120.58725 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 -0.00911 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 390.24121 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00348 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 -120.59773 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 315.71073 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 195.11996 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 -120.59642 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 74.53269 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 195.11785 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 -0.00700 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 390.23990 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 390.24690 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 74.52006 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 195.12131 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 510.83421 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 -0.00911 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00563 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 390.24348 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 -120.59773 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 74.53611 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 195.12700 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 -120.59642 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 315.71415 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 195.12911 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 390.23996 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 390.23990 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00006 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 315.71290 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 195.12131 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 -120.58725 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 390.24207 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00563 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00348 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 510.83069 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 74.53611 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 195.11996 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 510.82938 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 315.71415 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 195.11785 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 390.23996 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00694 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 390.24690 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 315.71290 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 195.12553 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 510.83421 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 390.24207 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 390.24121 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 390.24348 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 510.83069 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 315.71073 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 195.12700 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 510.82938 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 74.53269 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 195.12911 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 -0.00694 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 -0.00006 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00700 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 -120.59425 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 74.52700 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 195.12559 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 -0.00352 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 -0.00217 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 390.24127 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 195.11296 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 -120.59079 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 315.71079 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 195.11085 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 -120.58948 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 74.53275 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 390.23990 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 -0.00006 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 390.23996 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 510.82721 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 74.52700 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 195.12137 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 390.23648 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 -0.00217 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00569 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 195.12000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 -120.59079 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 74.53617 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 195.12211 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 -120.58948 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 315.71421 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 -0.00694 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 390.24690 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 390.23996 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 -120.59425 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 315.71984 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 195.12137 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 -0.00352 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 390.24901 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00569 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 195.11296 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 510.83763 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 74.53617 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 195.11085 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 510.83632 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 315.71421 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 390.23990 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 390.24690 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00700 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 510.82721 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 315.71984 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 195.12559 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 390.23648 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 390.24901 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 390.24127 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 195.12000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 510.83763 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 315.71079 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 195.12211 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 510.83632 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 74.53275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA A 448 CE2 TYR A 466 1.77 REMARK 500 CB ALA A 448 CD2 TYR A 466 1.94 REMARK 500 NH1 ARG A 239 OE1 GLU A 685 2.09 REMARK 500 ND2 ASN A 453 O GLY A 456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 477 C LYS A 478 N -0.224 REMARK 500 LYS A 478 C ASN A 479 N 0.307 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 286 36.95 -140.60 REMARK 500 ASN A 287 54.14 -92.83 REMARK 500 ASN A 328 136.56 -170.22 REMARK 500 PHE A 486 56.55 -141.70 REMARK 500 ARG A 487 124.54 -37.40 REMARK 500 LYS A 547 -179.47 -69.15 REMARK 500 HIS A 631 72.18 46.31 REMARK 500 PHE A 714 60.28 62.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-22412 RELATED DB: EMDB REMARK 900 ADENO-ASSOCIATED VIRUS STRAIN AAV7 CAPSID ICOSAHEDRAL STRUCTURE DBREF 7JOT A 220 737 UNP Q8JQG0 Q8JQG0_9VIRU 220 737 SEQRES 1 A 518 ASP GLY VAL GLY ASN ALA SER GLY ASN TRP HIS CYS ASP SEQRES 2 A 518 SER THR TRP LEU GLY ASP ARG VAL ILE THR THR SER THR SEQRES 3 A 518 ARG THR TRP ALA LEU PRO THR TYR ASN ASN HIS LEU TYR SEQRES 4 A 518 LYS GLN ILE SER SER GLU THR ALA GLY SER THR ASN ASP SEQRES 5 A 518 ASN THR TYR PHE GLY TYR SER THR PRO TRP GLY TYR PHE SEQRES 6 A 518 ASP PHE ASN ARG PHE HIS CYS HIS PHE SER PRO ARG ASP SEQRES 7 A 518 TRP GLN ARG LEU ILE ASN ASN ASN TRP GLY PHE ARG PRO SEQRES 8 A 518 LYS LYS LEU ARG PHE LYS LEU PHE ASN ILE GLN VAL LYS SEQRES 9 A 518 GLU VAL THR THR ASN ASP GLY VAL THR THR ILE ALA ASN SEQRES 10 A 518 ASN LEU THR SER THR ILE GLN VAL PHE SER ASP SER GLU SEQRES 11 A 518 TYR GLN LEU PRO TYR VAL LEU GLY SER ALA HIS GLN GLY SEQRES 12 A 518 CYS LEU PRO PRO PHE PRO ALA ASP VAL PHE MET ILE PRO SEQRES 13 A 518 GLN TYR GLY TYR LEU THR LEU ASN ASN GLY SER GLN SER SEQRES 14 A 518 VAL GLY ARG SER SER PHE TYR CYS LEU GLU TYR PHE PRO SEQRES 15 A 518 SER GLN MET LEU ARG THR GLY ASN ASN PHE GLU PHE SER SEQRES 16 A 518 TYR SER PHE GLU ASP VAL PRO PHE HIS SER SER TYR ALA SEQRES 17 A 518 HIS SER GLN SER LEU ASP ARG LEU MET ASN PRO LEU ILE SEQRES 18 A 518 ASP GLN TYR LEU TYR TYR LEU ALA ARG THR GLN SER ASN SEQRES 19 A 518 PRO GLY GLY THR ALA GLY ASN ARG GLU LEU GLN PHE TYR SEQRES 20 A 518 GLN GLY GLY PRO SER THR MET ALA GLU GLN ALA LYS ASN SEQRES 21 A 518 TRP LEU PRO GLY PRO CYS PHE ARG GLN GLN ARG VAL SER SEQRES 22 A 518 LYS THR LEU ASP GLN ASN ASN ASN SER ASN PHE ALA TRP SEQRES 23 A 518 THR GLY ALA THR LYS TYR HIS LEU ASN GLY ARG ASN SER SEQRES 24 A 518 LEU VAL ASN PRO GLY VAL ALA MET ALA THR HIS LYS ASP SEQRES 25 A 518 ASP GLU ASP ARG PHE PHE PRO SER SER GLY VAL LEU ILE SEQRES 26 A 518 PHE GLY LYS THR GLY ALA THR ASN LYS THR THR LEU GLU SEQRES 27 A 518 ASN VAL LEU MET THR ASN GLU GLU GLU ILE ARG PRO THR SEQRES 28 A 518 ASN PRO VAL ALA THR GLU GLU TYR GLY ILE VAL SER SER SEQRES 29 A 518 ASN LEU GLN ALA ALA ASN THR ALA ALA GLN THR GLN VAL SEQRES 30 A 518 VAL ASN ASN GLN GLY ALA LEU PRO GLY MET VAL TRP GLN SEQRES 31 A 518 ASN ARG ASP VAL TYR LEU GLN GLY PRO ILE TRP ALA LYS SEQRES 32 A 518 ILE PRO HIS THR ASP GLY ASN PHE HIS PRO SER PRO LEU SEQRES 33 A 518 MET GLY GLY PHE GLY LEU LYS HIS PRO PRO PRO GLN ILE SEQRES 34 A 518 LEU ILE LYS ASN THR PRO VAL PRO ALA ASN PRO PRO GLU SEQRES 35 A 518 VAL PHE THR PRO ALA LYS PHE ALA SER PHE ILE THR GLN SEQRES 36 A 518 TYR SER THR GLY GLN VAL SER VAL GLU ILE GLU TRP GLU SEQRES 37 A 518 LEU GLN LYS GLU ASN SER LYS ARG TRP ASN PRO GLU ILE SEQRES 38 A 518 GLN TYR THR SER ASN PHE GLU LYS GLN THR GLY VAL ASP SEQRES 39 A 518 PHE ALA VAL ASP SER GLN GLY VAL TYR SER GLU PRO ARG SEQRES 40 A 518 PRO ILE GLY THR ARG TYR LEU THR ARG ASN LEU HELIX 1 AA1 ARG A 288 HIS A 292 5 5 HELIX 2 AA2 SER A 294 ASN A 304 1 11 HELIX 3 AA3 CYS A 396 PHE A 400 5 5 HELIX 4 AA4 THR A 555 GLU A 557 5 3 HELIX 5 AA5 GLU A 564 ARG A 568 5 5 SHEET 1 AA1 5 ASP A 232 TRP A 235 0 SHEET 2 AA1 5 ARG A 239 LEU A 250 -1 O ILE A 241 N THR A 234 SHEET 3 AA1 5 GLN A 674 LYS A 690 -1 O TRP A 686 N VAL A 240 SHEET 4 AA1 5 ASN A 305 ASN A 328 -1 N GLY A 307 O GLN A 689 SHEET 5 AA1 5 VAL A 371 MET A 373 0 SHEET 1 AA2 5 VAL A 331 ASN A 336 0 SHEET 2 AA2 5 ASN A 305 ASN A 328 -1 N ASN A 328 O VAL A 331 SHEET 3 AA2 5 GLN A 674 LYS A 690 -1 O GLN A 689 N GLY A 307 SHEET 4 AA2 5 ARG A 239 LEU A 250 -1 N VAL A 240 O TRP A 686 SHEET 5 AA2 5 PHE A 411 SER A 416 0 SHEET 1 AA3 3 LYS A 259 SER A 262 0 SHEET 2 AA3 3 PHE A 275 TYR A 283 -1 O SER A 278 N LYS A 259 SHEET 3 AA3 3 GLN A 376 LEU A 380 -1 O TYR A 377 N TRP A 281 SHEET 1 AA4 5 LYS A 259 SER A 262 0 SHEET 2 AA4 5 PHE A 275 TYR A 283 -1 O SER A 278 N LYS A 259 SHEET 3 AA4 5 ILE A 648 ASN A 652 -1 O ILE A 650 N GLY A 282 SHEET 4 AA4 5 ILE A 342 SER A 346 -1 N GLN A 343 O LYS A 651 SHEET 5 AA4 5 GLN A 403 LEU A 405 -1 O GLN A 403 N VAL A 344 SHEET 1 AA5 2 ASN A 383 ASN A 384 0 SHEET 2 AA5 2 GLN A 387 SER A 388 -1 O GLN A 387 N ASN A 384 SHEET 1 AA6 2 TYR A 426 HIS A 428 0 SHEET 2 AA6 2 LEU A 733 ARG A 735 1 O LEU A 733 N ALA A 427 SHEET 1 AA7 2 TYR A 445 SER A 452 0 SHEET 2 AA7 2 ASN A 460 GLN A 467 -1 O GLN A 464 N ALA A 448 SHEET 1 AA8 2 CYS A 485 PHE A 486 0 SHEET 2 AA8 2 ASN A 599 GLN A 600 -1 O GLN A 600 N CYS A 485 SHEET 1 AA9 2 ARG A 490 SER A 492 0 SHEET 2 AA9 2 PHE A 536 PRO A 538 -1 O PHE A 537 N VAL A 491 SHEET 1 AB1 2 LYS A 510 LEU A 513 0 SHEET 2 AB1 2 ARG A 516 LEU A 519 -1 O ARG A 516 N LEU A 513 SHEET 1 AB2 2 ILE A 544 GLY A 546 0 SHEET 2 AB2 2 VAL A 559 MET A 561 -1 O LEU A 560 N PHE A 545 SHEET 1 AB3 2 GLY A 579 SER A 582 0 SHEET 2 AB3 2 THR A 594 VAL A 597 -1 O VAL A 597 N GLY A 579 SHEET 1 AB4 2 TRP A 620 LYS A 622 0 SHEET 2 AB4 2 PHE A 639 LEU A 641 1 O LEU A 641 N ALA A 621 CISPEP 1 ASN A 521 PRO A 522 0 -2.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 4132 LEU A 737 MASTER 335 0 0 5 36 0 0 6 4131 1 0 40 END