HEADER VIRAL PROTEIN 08-AUG-20 7JPI TITLE CRYSTAL STRUCTURE OF EBOV GLYCOPROTEIN WITH MODIFIED HR2 STALK AT 2.3A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: GP1,2,GP; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS - MAYINGA, ZAIRE, 1976; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 GENE: GP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: EBOLA VIRUS - MAYINGA, ZAIRE, 1976; SOURCE 11 ORGANISM_COMMON: ZEBOV; SOURCE 12 ORGANISM_TAXID: 128952; SOURCE 13 GENE: GP; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS EBOLA GLYCOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAUDHARY,R.L.STANFIELD,I.A.WILSON,J.ZHU REVDAT 3 18-OCT-23 7JPI 1 REMARK REVDAT 2 04-AUG-21 7JPI 1 JRNL REVDAT 1 07-APR-21 7JPI 0 JRNL AUTH L.HE,A.CHAUDHARY,X.LIN,C.SOU,T.ALKUTKAR,S.KUMAR,T.NGO, JRNL AUTH 2 E.KOSVINER,G.OZOROWSKI,R.L.STANFIELD,A.B.WARD,I.A.WILSON, JRNL AUTH 3 J.ZHU JRNL TITL SINGLE-COMPONENT MULTILAYERED SELF-ASSEMBLING NANOPARTICLES JRNL TITL 2 PRESENTING RATIONALLY DESIGNED GLYCOPROTEIN TRIMERS AS EBOLA JRNL TITL 3 VIRUS VACCINES. JRNL REF NAT COMMUN V. 12 2633 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33976149 JRNL DOI 10.1038/S41467-021-22867-W REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 34892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0000 - 5.2200 0.93 2843 125 0.1978 0.2506 REMARK 3 2 5.2200 - 4.1400 0.95 2807 134 0.1516 0.1618 REMARK 3 3 4.1400 - 3.6200 0.95 2774 133 0.1610 0.2051 REMARK 3 4 3.6200 - 3.2900 0.97 2791 150 0.1824 0.2002 REMARK 3 5 3.2900 - 3.0500 0.96 2735 177 0.1994 0.2487 REMARK 3 6 3.0500 - 2.8700 0.97 2744 156 0.2078 0.2775 REMARK 3 7 2.8700 - 2.7300 0.97 2797 148 0.2188 0.2608 REMARK 3 8 2.7300 - 2.6100 0.98 2776 151 0.2543 0.2842 REMARK 3 9 2.6100 - 2.5100 0.97 2782 142 0.2757 0.3326 REMARK 3 10 2.5100 - 2.4200 0.98 2796 138 0.2919 0.3170 REMARK 3 11 2.4200 - 2.3500 0.98 2801 132 0.3093 0.3696 REMARK 3 12 2.3500 - 2.2800 0.89 2531 129 0.3380 0.3658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.316 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3170 REMARK 3 ANGLE : 0.528 4307 REMARK 3 CHIRALITY : 0.042 499 REMARK 3 PLANARITY : 0.004 542 REMARK 3 DIHEDRAL : 23.590 1180 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 49.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.M SODIUM CITRATE, 10% PEG W/V 6000, REMARK 280 PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.29150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.07726 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 104.12633 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.29150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.07726 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 104.12633 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.29150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.07726 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 104.12633 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.29150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.07726 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 104.12633 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.29150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.07726 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.12633 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.29150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.07726 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 104.12633 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.15453 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 208.25267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 66.15453 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 208.25267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 66.15453 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 208.25267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 66.15453 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 208.25267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 66.15453 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 208.25267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 66.15453 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 208.25267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, H, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 ASP A 12 REMARK 465 ARG A 13 REMARK 465 PHE A 14 REMARK 465 LYS A 15 REMARK 465 ARG A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 PHE A 19 REMARK 465 PHE A 20 REMARK 465 LEU A 21 REMARK 465 TRP A 22 REMARK 465 VAL A 23 REMARK 465 ILE A 24 REMARK 465 ILE A 25 REMARK 465 LEU A 26 REMARK 465 PHE A 27 REMARK 465 GLN A 28 REMARK 465 ARG A 29 REMARK 465 THR A 30 REMARK 465 PHE A 31 REMARK 465 SER A 32 REMARK 465 LEU A 199 REMARK 465 ARG A 200 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 VAL A 203 REMARK 465 ASN A 204 REMARK 465 ALA A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 ASP A 208 REMARK 465 PRO A 209 REMARK 465 SER A 210 REMARK 465 SER A 211 REMARK 465 THR A 284 REMARK 465 ILE A 285 REMARK 465 GLY A 286 REMARK 465 ILE B 627 REMARK 465 HIS B 628 REMARK 465 ASP B 629 REMARK 465 PHE B 630 REMARK 465 VAL B 631 REMARK 465 ASP B 632 REMARK 465 LYS B 633 REMARK 465 THR B 634 REMARK 465 LEU B 635 REMARK 465 PRO B 636 REMARK 465 ASP B 637 REMARK 465 ALA B 638 REMARK 465 SER B 639 REMARK 465 GLY B 640 REMARK 465 TYR B 641 REMARK 465 ILE B 642 REMARK 465 PRO B 643 REMARK 465 GLU B 644 REMARK 465 ALA B 645 REMARK 465 PRO B 646 REMARK 465 ARG B 647 REMARK 465 ASP B 648 REMARK 465 GLY B 649 REMARK 465 GLN B 650 REMARK 465 ALA B 651 REMARK 465 TYR B 652 REMARK 465 VAL B 653 REMARK 465 ARG B 654 REMARK 465 LYS B 655 REMARK 465 ASP B 656 REMARK 465 GLY B 657 REMARK 465 GLU B 658 REMARK 465 TRP B 659 REMARK 465 VAL B 660 REMARK 465 LEU B 661 REMARK 465 LEU B 662 REMARK 465 SER B 663 REMARK 465 THR B 664 REMARK 465 PHE B 665 REMARK 465 LEU B 666 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG F 1 O5 NAG F 2 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 162 -157.48 -109.15 REMARK 500 ARG A 164 18.79 58.66 REMARK 500 SER A 195 -143.21 -152.16 REMARK 500 ASN B 550 37.49 -77.99 REMARK 500 LEU B 604 -11.79 76.26 REMARK 500 CYS B 609 58.08 -91.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE COMPLETE SEQUENCE OF CHAIN A IS REMARK 999 IPLGVIHNSALQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGV REMARK 999 PPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFA REMARK 999 FHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSG REMARK 999 YYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGK REMARK 999 LIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVSTHHQDTGEESASSGKLGLIT REMARK 999 NTIAGVAGLITGGRRTRR DBREF 7JPI A 1 476 PDB 7JPI 7JPI 1 476 DBREF 7JPI B 502 637 UNP Q05320 VGP_EBOZM 502 637 SEQADV 7JPI LEU B 615 UNP Q05320 TRP 615 ENGINEERED MUTATION SEQADV 7JPI ALA B 638 UNP Q05320 EXPRESSION TAG SEQADV 7JPI SER B 639 UNP Q05320 EXPRESSION TAG SEQADV 7JPI GLY B 640 UNP Q05320 EXPRESSION TAG SEQADV 7JPI TYR B 641 UNP Q05320 EXPRESSION TAG SEQADV 7JPI ILE B 642 UNP Q05320 EXPRESSION TAG SEQADV 7JPI PRO B 643 UNP Q05320 EXPRESSION TAG SEQADV 7JPI GLU B 644 UNP Q05320 EXPRESSION TAG SEQADV 7JPI ALA B 645 UNP Q05320 EXPRESSION TAG SEQADV 7JPI PRO B 646 UNP Q05320 EXPRESSION TAG SEQADV 7JPI ARG B 647 UNP Q05320 EXPRESSION TAG SEQADV 7JPI ASP B 648 UNP Q05320 EXPRESSION TAG SEQADV 7JPI GLY B 649 UNP Q05320 EXPRESSION TAG SEQADV 7JPI GLN B 650 UNP Q05320 EXPRESSION TAG SEQADV 7JPI ALA B 651 UNP Q05320 EXPRESSION TAG SEQADV 7JPI TYR B 652 UNP Q05320 EXPRESSION TAG SEQADV 7JPI VAL B 653 UNP Q05320 EXPRESSION TAG SEQADV 7JPI ARG B 654 UNP Q05320 EXPRESSION TAG SEQADV 7JPI LYS B 655 UNP Q05320 EXPRESSION TAG SEQADV 7JPI ASP B 656 UNP Q05320 EXPRESSION TAG SEQADV 7JPI GLY B 657 UNP Q05320 EXPRESSION TAG SEQADV 7JPI GLU B 658 UNP Q05320 EXPRESSION TAG SEQADV 7JPI TRP B 659 UNP Q05320 EXPRESSION TAG SEQADV 7JPI VAL B 660 UNP Q05320 EXPRESSION TAG SEQADV 7JPI LEU B 661 UNP Q05320 EXPRESSION TAG SEQADV 7JPI LEU B 662 UNP Q05320 EXPRESSION TAG SEQADV 7JPI SER B 663 UNP Q05320 EXPRESSION TAG SEQADV 7JPI THR B 664 UNP Q05320 EXPRESSION TAG SEQADV 7JPI PHE B 665 UNP Q05320 EXPRESSION TAG SEQADV 7JPI LEU B 666 UNP Q05320 EXPRESSION TAG SEQRES 1 A 297 MET GLY VAL THR GLY ILE LEU GLN LEU PRO ARG ASP ARG SEQRES 2 A 297 PHE LYS ARG THR SER PHE PHE LEU TRP VAL ILE ILE LEU SEQRES 3 A 297 PHE GLN ARG THR PHE SER ILE PRO LEU GLY VAL ILE HIS SEQRES 4 A 297 ASN SER ALA LEU GLN VAL SER ASP VAL ASP LYS LEU VAL SEQRES 5 A 297 CYS ARG ASP LYS LEU SER SER THR ASN GLN LEU ARG SER SEQRES 6 A 297 VAL GLY LEU ASN LEU GLU GLY ASN GLY VAL ALA THR ASP SEQRES 7 A 297 VAL PRO SER ALA THR LYS ARG TRP GLY PHE ARG SER GLY SEQRES 8 A 297 VAL PRO PRO LYS VAL VAL ASN TYR GLU ALA GLY GLU TRP SEQRES 9 A 297 ALA GLU ASN CYS TYR ASN LEU GLU ILE LYS LYS PRO ASP SEQRES 10 A 297 GLY SER GLU CYS LEU PRO ALA ALA PRO ASP GLY ILE ARG SEQRES 11 A 297 GLY PHE PRO ARG CYS ARG TYR VAL HIS LYS VAL SER GLY SEQRES 12 A 297 THR GLY PRO CYS ALA GLY ASP PHE ALA PHE HIS LYS GLU SEQRES 13 A 297 GLY ALA PHE PHE LEU TYR ASP ARG LEU ALA SER THR VAL SEQRES 14 A 297 ILE TYR ARG GLY THR THR PHE ALA GLU GLY VAL VAL ALA SEQRES 15 A 297 PHE LEU ILE LEU PRO GLN ALA LYS LYS ASP PHE PHE SER SEQRES 16 A 297 SER HIS PRO LEU ARG GLU PRO VAL ASN ALA THR GLU ASP SEQRES 17 A 297 PRO SER SER GLY TYR TYR SER THR THR ILE ARG TYR GLN SEQRES 18 A 297 ALA THR GLY PHE GLY THR ASN GLU THR GLU TYR LEU PHE SEQRES 19 A 297 GLU VAL ASP ASN LEU THR TYR VAL GLN LEU GLU SER ARG SEQRES 20 A 297 PHE THR PRO GLN PHE LEU LEU GLN LEU ASN GLU THR ILE SEQRES 21 A 297 TYR THR SER GLY LYS ARG SER ASN THR THR GLY LYS LEU SEQRES 22 A 297 ILE TRP LYS VAL ASN PRO GLU ILE ASP THR THR ILE GLY SEQRES 23 A 297 GLU TRP ALA PHE TRP GLU THR UNK UNK UNK UNK SEQRES 1 B 165 GLU ALA ILE VAL ASN ALA GLN PRO LYS CYS ASN PRO ASN SEQRES 2 B 165 LEU HIS TYR TRP THR THR GLN ASP GLU GLY ALA ALA ILE SEQRES 3 B 165 GLY LEU ALA TRP ILE PRO TYR PHE GLY PRO ALA ALA GLU SEQRES 4 B 165 GLY ILE TYR ILE GLU GLY LEU MET HIS ASN GLN ASP GLY SEQRES 5 B 165 LEU ILE CYS GLY LEU ARG GLN LEU ALA ASN GLU THR THR SEQRES 6 B 165 GLN ALA LEU GLN LEU PHE LEU ARG ALA THR THR GLU LEU SEQRES 7 B 165 ARG THR PHE SER ILE LEU ASN ARG LYS ALA ILE ASP PHE SEQRES 8 B 165 LEU LEU GLN ARG TRP GLY GLY THR CYS HIS ILE LEU GLY SEQRES 9 B 165 PRO ASP CYS CYS ILE GLU PRO HIS ASP LEU THR LYS ASN SEQRES 10 B 165 ILE THR ASP LYS ILE ASP GLN ILE ILE HIS ASP PHE VAL SEQRES 11 B 165 ASP LYS THR LEU PRO ASP ALA SER GLY TYR ILE PRO GLU SEQRES 12 B 165 ALA PRO ARG ASP GLY GLN ALA TYR VAL ARG LYS ASP GLY SEQRES 13 B 165 GLU TRP VAL LEU LEU SER THR PHE LEU HET NAG F 1 14 HET NAG F 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET GOL A 501 6 HET GOL A 502 6 HET NAG A 503 14 HET PO4 A 504 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 5 BMA C6 H12 O6 FORMUL 5 MAN 3(C6 H12 O6) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 PO4 O4 P 3- FORMUL 10 HOH *138(H2 O) HELIX 1 AA1 SER A 59 ASN A 61 5 3 HELIX 2 AA2 GLU A 71 GLY A 74 5 4 HELIX 3 AA3 ASP A 78 LYS A 84 1 7 HELIX 4 AA4 PRO A 187 LYS A 191 5 5 HELIX 5 AA5 THR A 249 SER A 263 1 15 HELIX 6 AA6 ALA B 538 ILE B 542 5 5 HELIX 7 AA7 ASN B 550 ASP B 552 5 3 HELIX 8 AA8 GLY B 553 THR B 576 1 24 HELIX 9 AA9 SER B 583 GLY B 598 1 16 HELIX 10 AB1 PRO B 612 ASP B 621 1 10 HELIX 11 AB2 LYS B 622 ILE B 626 5 5 SHEET 1 AA1 2 LEU A 35 HIS A 39 0 SHEET 2 AA1 2 ALA A 42 SER A 46 -1 O GLN A 44 N VAL A 37 SHEET 1 AA2 6 LEU A 63 ASN A 69 0 SHEET 2 AA2 6 ALA A 177 ILE A 185 -1 O VAL A 180 N LEU A 68 SHEET 3 AA2 6 PHE A 159 LEU A 161 -1 N LEU A 161 O ALA A 177 SHEET 4 AA2 6 LEU A 165 SER A 167 -1 O SER A 167 N PHE A 160 SHEET 5 AA2 6 VAL A 96 ASN A 98 -1 N VAL A 97 O ALA A 166 SHEET 6 AA2 6 ARG B 580 THR B 581 1 O THR B 581 N VAL A 96 SHEET 1 AA3 2 TRP A 86 ARG A 89 0 SHEET 2 AA3 2 PHE A 151 HIS A 154 -1 O PHE A 153 N GLY A 87 SHEET 1 AA4 3 GLY A 102 GLU A 103 0 SHEET 2 AA4 3 LEU B 515 THR B 519 -1 O TRP B 518 N GLY A 102 SHEET 3 AA4 3 ILE B 544 MET B 548 -1 O MET B 548 N LEU B 515 SHEET 1 AA5 6 ALA A 105 LYS A 114 0 SHEET 2 AA5 6 CYS A 135 THR A 144 1 O HIS A 139 N CYS A 108 SHEET 3 AA5 6 THR A 216 THR A 223 1 O ILE A 218 N VAL A 138 SHEET 4 AA5 6 GLU A 231 GLU A 235 -1 O GLU A 235 N ARG A 219 SHEET 5 AA5 6 THR A 240 GLN A 243 -1 O VAL A 242 N PHE A 234 SHEET 6 AA5 6 LEU A 273 TRP A 275 1 O TRP A 275 N TYR A 241 SSBOND 1 CYS A 53 CYS B 609 1555 1555 2.03 SSBOND 2 CYS A 108 CYS A 135 1555 1555 2.03 SSBOND 3 CYS A 121 CYS A 147 1555 1555 2.03 SSBOND 4 CYS B 511 CYS B 556 1555 1555 2.03 SSBOND 5 CYS B 601 CYS B 608 1555 1555 2.04 LINK ND2 ASN A 238 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 257 C1 NAG H 1 1555 1555 1.44 LINK ND2 ASN A 268 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN B 563 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.38 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.37 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.37 LINK O3 BMA C 3 C1 MAN C 6 1555 1555 1.37 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.37 CRYST1 114.583 114.583 312.379 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008727 0.005039 0.000000 0.00000 SCALE2 0.000000 0.010077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003201 0.00000