HEADER VIRAL PROTEIN 12-AUG-20 7JRN TITLE CRYSTAL STRUCTURE OF THE WILD TYPE SARS-COV-2 PAPAIN-LIKE PROTEASE TITLE 2 (PLPRO) WITH INHIBITOR GRL0617 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, J; COMPND 4 SYNONYM: NSP3,PL2-PRO,PAPAIN-LIKE PROTEASE,PAPAIN-LIKE PROTEINASE,PL- COMPND 5 PRO; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COVID, COVID19, COVID-19, SARS, SARS COV2, COV, NCOV 19, CORONAVIRUS, KEYWDS 2 MAIN PROTEASE, 3CL, MPRO, PRO, VIRAL PROTEIN, GC376, CALPAIN KEYWDS 3 INHIBITOR II, LEUPEPTIN, CALPAIN, ALDEHYDE, GC-376, 3CL-LIKE, A- KEYWDS 4 KETOAMIDE, ALPHEKETOAMIDE, ALPHA, KETOAMIDE, PEPTIDOMIMETIC, KEYWDS 5 PROTEASE, CYSTEINE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, GRL0617, KEYWDS 6 PAPIN-LIKE PROTEASE, PLP, PLPRO, PL-PRO, PAPAIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SACCO,C.MA,J.WANG,Y.CHEN REVDAT 4 18-OCT-23 7JRN 1 REMARK REVDAT 3 08-SEP-21 7JRN 1 JRNL REVDAT 2 27-JAN-21 7JRN 1 COMPND REVDAT 1 26-AUG-20 7JRN 0 JRNL AUTH C.MA,M.D.SACCO,Z.XIA,G.LAMBRINIDIS,J.A.TOWNSEND,Y.HU,X.MENG, JRNL AUTH 2 T.SZETO,M.BA,X.ZHANG,M.GONGORA,F.ZHANG,M.T.MARTY,Y.XIANG, JRNL AUTH 3 A.KOLOCOURIS,Y.CHEN,J.WANG JRNL TITL DISCOVERY OF SARS-COV-2 PAPAIN-LIKE PROTEASE INHIBITORS JRNL TITL 2 THROUGH A COMBINATION OF HIGH-THROUGHPUT SCREENING AND A JRNL TITL 3 FLIPGFP-BASED REPORTER ASSAY. JRNL REF ACS CENT.SCI. V. 7 1245 2021 JRNL REFN ESSN 2374-7951 JRNL PMID 34341772 JRNL DOI 10.1021/ACSCENTSCI.1C00519 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 22652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1176 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 28.93000 REMARK 3 B22 (A**2) : -2.46000 REMARK 3 B33 (A**2) : -26.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 13.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7JRN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6WZU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4,000 0.2 M LI2SO4 0.1 M TRIS REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.43600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 316 REMARK 465 GLU A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 LEU J 316 REMARK 465 GLU J 317 REMARK 465 HIS J 318 REMARK 465 HIS J 319 REMARK 465 HIS J 320 REMARK 465 HIS J 321 REMARK 465 HIS J 322 REMARK 465 HIS J 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS J 190 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 14 -55.75 -125.92 REMARK 500 SER A 24 43.62 -102.77 REMARK 500 ALA A 107 137.64 -172.88 REMARK 500 HIS A 175 30.05 -98.47 REMARK 500 THR A 259 -66.96 -93.15 REMARK 500 CYS A 270 41.52 -151.88 REMARK 500 LYS A 279 -122.04 -129.87 REMARK 500 ASN A 308 -64.37 -126.66 REMARK 500 ILE J 14 -62.26 -105.49 REMARK 500 PRO J 59 88.03 -66.68 REMARK 500 ASP J 76 103.76 -55.93 REMARK 500 ASN J 99 2.86 81.52 REMARK 500 SER J 103 -169.14 -117.06 REMARK 500 ALA J 107 130.02 -178.11 REMARK 500 THR J 191 -73.76 -81.51 REMARK 500 CYS J 224 -138.49 58.25 REMARK 500 THR J 225 -65.46 -127.84 REMARK 500 CYS J 226 62.68 -61.22 REMARK 500 CYS J 270 42.71 -160.67 REMARK 500 LYS J 279 -119.40 -122.50 REMARK 500 ASP J 286 73.16 -108.43 REMARK 500 ASN J 308 -57.55 -138.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 547 DISTANCE = 6.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 192 SG 110.5 REMARK 620 3 CYS A 224 SG 135.8 96.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN J 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR J 191 OG1 REMARK 620 2 CYS J 226 SG 82.9 REMARK 620 N 1 DBREF 7JRN A 1 315 UNP P0DTC1 R1A_SARS2 1564 1878 DBREF 7JRN J 1 315 UNP P0DTC1 R1A_SARS2 1564 1878 SEQADV 7JRN LEU A 316 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN GLU A 317 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS A 318 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS A 319 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS A 320 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS A 321 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS A 322 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS A 323 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN LEU J 316 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN GLU J 317 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS J 318 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS J 319 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS J 320 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS J 321 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS J 322 UNP P0DTC1 EXPRESSION TAG SEQADV 7JRN HIS J 323 UNP P0DTC1 EXPRESSION TAG SEQRES 1 A 323 GLU VAL ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN SEQRES 2 A 323 ILE ASN LEU HIS THR GLN VAL VAL ASP MET SER MET THR SEQRES 3 A 323 TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA SEQRES 4 A 323 ASP VAL THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY SEQRES 5 A 323 LYS THR PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG SEQRES 6 A 323 VAL GLU ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER SEQRES 7 A 323 PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS SEQRES 8 A 323 LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE SEQRES 9 A 323 LYS TRP ALA ASP ASN ASN CYS TYR LEU ALA THR ALA LEU SEQRES 10 A 323 LEU THR LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO SEQRES 11 A 323 ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU SEQRES 12 A 323 ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN SEQRES 13 A 323 LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SEQRES 14 A 323 SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS SEQRES 15 A 323 ARG VAL LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN SEQRES 16 A 323 GLN THR THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET SEQRES 17 A 323 GLY THR LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN SEQRES 18 A 323 ILE PRO CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU SEQRES 19 A 323 VAL GLN GLN GLU SER PRO PHE VAL MET MET SER ALA PRO SEQRES 20 A 323 PRO ALA GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS SEQRES 21 A 323 ALA SER GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR SEQRES 22 A 323 LYS HIS ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP SEQRES 23 A 323 GLY ALA LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO SEQRES 24 A 323 ILE THR ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR SEQRES 25 A 323 THR ILE LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 J 323 GLU VAL ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN SEQRES 2 J 323 ILE ASN LEU HIS THR GLN VAL VAL ASP MET SER MET THR SEQRES 3 J 323 TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA SEQRES 4 J 323 ASP VAL THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY SEQRES 5 J 323 LYS THR PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG SEQRES 6 J 323 VAL GLU ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER SEQRES 7 J 323 PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS SEQRES 8 J 323 LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE SEQRES 9 J 323 LYS TRP ALA ASP ASN ASN CYS TYR LEU ALA THR ALA LEU SEQRES 10 J 323 LEU THR LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO SEQRES 11 J 323 ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU SEQRES 12 J 323 ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN SEQRES 13 J 323 LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SEQRES 14 J 323 SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS SEQRES 15 J 323 ARG VAL LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN SEQRES 16 J 323 GLN THR THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET SEQRES 17 J 323 GLY THR LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN SEQRES 18 J 323 ILE PRO CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU SEQRES 19 J 323 VAL GLN GLN GLU SER PRO PHE VAL MET MET SER ALA PRO SEQRES 20 J 323 PRO ALA GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS SEQRES 21 J 323 ALA SER GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR SEQRES 22 J 323 LYS HIS ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP SEQRES 23 J 323 GLY ALA LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO SEQRES 24 J 323 ILE THR ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR SEQRES 25 J 323 THR ILE LYS LEU GLU HIS HIS HIS HIS HIS HIS HET TTT A 401 23 HET ZN A 402 1 HET SO4 A 403 5 HET SO4 A 404 5 HET TTT J 401 23 HET ZN J 402 1 HET SO4 J 403 5 HET SO4 J 404 5 HET SO4 J 405 5 HETNAM TTT 5-AMINO-2-METHYL-N-[(1R)-1-NAPHTHALEN-1- HETNAM 2 TTT YLETHYL]BENZAMIDE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 TTT 2(C20 H20 N2 O) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 SO4 5(O4 S 2-) FORMUL 12 HOH *88(H2 O) HELIX 1 AA1 THR A 26 PHE A 31 1 6 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 SER A 78 LYS A 91 1 14 HELIX 5 AA5 ASN A 110 GLN A 121 1 12 HELIX 6 AA6 PRO A 129 GLY A 142 1 14 HELIX 7 AA7 ALA A 144 CYS A 155 1 12 HELIX 8 AA8 ASP A 164 HIS A 175 1 12 HELIX 9 AA9 VAL A 202 ALA A 204 5 3 HELIX 10 AB1 SER A 212 GLY A 219 1 8 HELIX 11 AB2 THR J 26 GLY J 32 1 7 HELIX 12 AB3 HIS J 47 GLU J 51 5 5 HELIX 13 AB4 ASP J 61 HIS J 73 1 13 HELIX 14 AB5 SER J 78 LYS J 91 1 14 HELIX 15 AB6 ASN J 110 GLN J 121 1 12 HELIX 16 AB7 PRO J 129 GLY J 142 1 14 HELIX 17 AB8 ALA J 144 ASN J 156 1 13 HELIX 18 AB9 ASP J 164 HIS J 175 1 12 HELIX 19 AC1 VAL J 202 ALA J 204 5 3 HELIX 20 AC2 GLU J 214 GLY J 219 1 6 SHEET 1 AA1 8 ALA A 39 ASP A 40 0 SHEET 2 AA1 8 THR A 34 LEU A 36 -1 N LEU A 36 O ALA A 39 SHEET 3 AA1 8 THR A 54 VAL A 57 -1 O TYR A 56 N TYR A 35 SHEET 4 AA1 8 THR A 4 THR A 10 1 N PHE A 8 O PHE A 55 SHEET 5 AA1 8 ASN A 15 ASP A 22 -1 O HIS A 17 N THR A 9 SHEET 6 AA1 8 LEU J 16 ASP J 22 -1 O LEU J 16 N LEU A 16 SHEET 7 AA1 8 THR J 4 THR J 10 -1 N THR J 9 O HIS J 17 SHEET 8 AA1 8 THR J 54 TYR J 56 1 O PHE J 55 N PHE J 8 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 4 GLY A 193 LYS A 200 0 SHEET 2 AA3 4 LYS A 182 CYS A 189 -1 N VAL A 187 O GLN A 195 SHEET 3 AA3 4 GLN A 229 GLU A 238 -1 O GLU A 238 N LYS A 182 SHEET 4 AA3 4 VAL A 220 PRO A 223 -1 N ILE A 222 O ALA A 230 SHEET 1 AA4 4 GLY A 193 LYS A 200 0 SHEET 2 AA4 4 LYS A 182 CYS A 189 -1 N VAL A 187 O GLN A 195 SHEET 3 AA4 4 GLN A 229 GLU A 238 -1 O GLU A 238 N LYS A 182 SHEET 4 AA4 4 SER A 309 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 PHE A 241 GLU A 252 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 LYS A 297 LYS A 306 -1 O VAL A 303 N MET A 244 SHEET 4 AA5 7 CYS A 260 ASN A 267 -1 N CYS A 260 O PHE A 304 SHEET 5 AA5 7 CYS A 270 SER A 278 -1 O ILE A 276 N ALA A 261 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O ILE A 285 N HIS A 275 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O THR A 291 N CYS A 284 SHEET 1 AA6 2 TYR J 35 LEU J 36 0 SHEET 2 AA6 2 ALA J 39 ASP J 40 -1 O ALA J 39 N LEU J 36 SHEET 1 AA7 2 GLN J 97 VAL J 98 0 SHEET 2 AA7 2 LEU J 101 THR J 102 -1 O LEU J 101 N VAL J 98 SHEET 1 AA8 4 GLN J 194 LYS J 200 0 SHEET 2 AA8 4 LYS J 182 VAL J 188 -1 N ARG J 183 O LEU J 199 SHEET 3 AA8 4 ALA J 230 GLU J 238 -1 O GLU J 238 N LYS J 182 SHEET 4 AA8 4 VAL J 220 ILE J 222 -1 N VAL J 220 O LYS J 232 SHEET 1 AA9 4 GLN J 194 LYS J 200 0 SHEET 2 AA9 4 LYS J 182 VAL J 188 -1 N ARG J 183 O LEU J 199 SHEET 3 AA9 4 ALA J 230 GLU J 238 -1 O GLU J 238 N LYS J 182 SHEET 4 AA9 4 TYR J 310 THR J 311 -1 O TYR J 310 N GLN J 237 SHEET 1 AB1 7 MET J 206 MET J 208 0 SHEET 2 AB1 7 PHE J 241 GLU J 252 1 O SER J 245 N TYR J 207 SHEET 3 AB1 7 LYS J 297 LYS J 306 -1 O VAL J 303 N MET J 244 SHEET 4 AB1 7 CYS J 260 ASN J 267 -1 N CYS J 260 O PHE J 304 SHEET 5 AB1 7 CYS J 270 SER J 278 -1 O ILE J 276 N ALA J 261 SHEET 6 AB1 7 LEU J 282 ASP J 286 -1 O ILE J 285 N HIS J 275 SHEET 7 AB1 7 LEU J 289 SER J 293 -1 O THR J 291 N CYS J 284 LINK SG CYS A 189 ZN ZN A 402 1555 1555 2.18 LINK SG CYS A 192 ZN ZN A 402 1555 1555 2.72 LINK SG CYS A 224 ZN ZN A 402 1555 1555 2.40 LINK OG1 THR J 191 ZN ZN J 402 1555 1555 2.23 LINK SG CYS J 226 ZN ZN J 402 1555 1555 2.27 CRYST1 46.733 144.872 60.145 90.00 99.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021398 0.000000 0.003491 0.00000 SCALE2 0.000000 0.006903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016846 0.00000