HEADER BIOSYNTHETIC PROTEIN 19-AUG-20 7JUA TITLE CRYSTAL STRUCTURE OF THE SECOND HETEROCYCLIZATION DOMAIN OF TITLE 2 YERSINIABACTIN SYNTHETASE AT 2.35 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRP2 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HETEROCYCLIZATION DOMAIN; COMPND 5 SYNONYM: YBT PEPTIDE SYNTHETASE HMWP2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: IRP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS HETEROCYCLIZATION DOMAIN, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.XIA,J.SOULE,D.P.DOWLING REVDAT 3 18-OCT-23 7JUA 1 REMARK REVDAT 2 05-OCT-22 7JUA 1 JRNL REVDAT 1 22-SEP-21 7JUA 0 JRNL AUTH A.D.GNANN,Y.XIA,J.SOULE,C.BARTHELEMY,J.S.MAWANI,S.N.MUSOKE, JRNL AUTH 2 B.M.CASTELLANO,E.J.BRIGNOLE,D.P.FRUEH,D.P.DOWLING JRNL TITL HIGH-RESOLUTION STRUCTURES OF A SIDEROPHORE-PRODUCING JRNL TITL 2 CYCLIZATION DOMAIN FROM YERSINIA PESTIS OFFER A REFINED JRNL TITL 3 PROPOSAL OF SUBSTRATE BINDING. JRNL REF J.BIOL.CHEM. 02454 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36063993 JRNL DOI 10.1016/J.JBC.2022.102454 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.3300 - 4.8700 0.99 2720 143 0.1574 0.1882 REMARK 3 2 4.8700 - 3.8800 1.00 2605 134 0.1358 0.1404 REMARK 3 3 3.8700 - 3.3900 1.00 2563 135 0.1639 0.2000 REMARK 3 4 3.3900 - 3.0800 1.00 2540 132 0.1849 0.2537 REMARK 3 5 3.0800 - 2.8600 1.00 2537 134 0.2005 0.2489 REMARK 3 6 2.8600 - 2.6900 1.00 2511 131 0.2001 0.2673 REMARK 3 7 2.6900 - 2.5600 1.00 2498 129 0.2064 0.2741 REMARK 3 8 2.5600 - 2.4400 0.99 2503 132 0.2030 0.2618 REMARK 3 9 2.4400 - 2.3500 0.99 2481 130 0.2068 0.2729 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.272 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.945 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3593 REMARK 3 ANGLE : 0.563 4921 REMARK 3 CHIRALITY : 0.062 535 REMARK 3 PLANARITY : 0.004 647 REMARK 3 DIHEDRAL : 17.198 1314 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1483 THROUGH 1641 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.4754 24.5502 -11.7610 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.3457 REMARK 3 T33: 0.3094 T12: 0.0233 REMARK 3 T13: 0.0421 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.7687 L22: 1.0669 REMARK 3 L33: 1.4232 L12: -0.3445 REMARK 3 L13: 0.4806 L23: -0.2836 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: -0.2198 S13: 0.0265 REMARK 3 S21: 0.0290 S22: -0.0348 S23: 0.0239 REMARK 3 S31: -0.1100 S32: -0.0309 S33: -0.0569 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1642 THROUGH 1668 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.7255 8.0486 -12.5529 REMARK 3 T TENSOR REMARK 3 T11: 0.3133 T22: 0.4131 REMARK 3 T33: 0.3527 T12: -0.0201 REMARK 3 T13: 0.0673 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.5535 L22: 0.2007 REMARK 3 L33: 1.6332 L12: -0.2952 REMARK 3 L13: -0.1935 L23: -0.1598 REMARK 3 S TENSOR REMARK 3 S11: 0.1700 S12: -0.1419 S13: -0.1427 REMARK 3 S21: -0.3169 S22: 0.1995 S23: 0.1970 REMARK 3 S31: 0.5964 S32: -0.0162 S33: 0.3845 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1669 THROUGH 1802 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2743 6.5694 -0.6406 REMARK 3 T TENSOR REMARK 3 T11: 0.2910 T22: 0.2791 REMARK 3 T33: 0.2294 T12: -0.0313 REMARK 3 T13: 0.0185 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.4991 L22: 1.1162 REMARK 3 L33: 1.6942 L12: -0.0569 REMARK 3 L13: 0.3063 L23: 0.2471 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: -0.2343 S13: -0.1365 REMARK 3 S21: 0.1997 S22: 0.0301 S23: 0.0295 REMARK 3 S31: 0.2110 S32: -0.0332 S33: 0.0053 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1803 THROUGH 1847 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.3005 9.9203 -1.0566 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.4930 REMARK 3 T33: 0.3483 T12: -0.0391 REMARK 3 T13: 0.0836 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.7626 L22: 0.6480 REMARK 3 L33: 0.1761 L12: 0.3740 REMARK 3 L13: 0.3456 L23: 0.2708 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: -0.2370 S13: 0.0050 REMARK 3 S21: 0.1831 S22: -0.1259 S23: -0.0439 REMARK 3 S31: 0.1768 S32: -0.5960 S33: -0.1170 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1848 THROUGH 1909 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5240 16.4318 -7.0247 REMARK 3 T TENSOR REMARK 3 T11: 0.2749 T22: 0.3629 REMARK 3 T33: 0.2976 T12: 0.0112 REMARK 3 T13: -0.0066 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.7909 L22: 0.2879 REMARK 3 L33: 0.7347 L12: 0.4302 REMARK 3 L13: -0.1065 L23: -0.2598 REMARK 3 S TENSOR REMARK 3 S11: 0.1208 S12: -0.0654 S13: 0.0440 REMARK 3 S21: 0.0604 S22: 0.0092 S23: 0.0224 REMARK 3 S31: -0.0768 S32: -0.0145 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24196 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JTJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG 3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.02900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.63550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.63550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.01450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.63550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.63550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.04350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.63550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.63550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.01450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.63550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.63550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.04350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.02900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1459 REMARK 465 GLY A 1460 REMARK 465 SER A 1461 REMARK 465 SER A 1462 REMARK 465 HIS A 1463 REMARK 465 HIS A 1464 REMARK 465 HIS A 1465 REMARK 465 HIS A 1466 REMARK 465 HIS A 1467 REMARK 465 HIS A 1468 REMARK 465 SER A 1469 REMARK 465 SER A 1470 REMARK 465 GLY A 1471 REMARK 465 LEU A 1472 REMARK 465 VAL A 1473 REMARK 465 PRO A 1474 REMARK 465 ARG A 1475 REMARK 465 GLY A 1476 REMARK 465 SER A 1477 REMARK 465 HIS A 1478 REMARK 465 MET A 1479 REMARK 465 PRO A 1480 REMARK 465 VAL A 1481 REMARK 465 GLU A 1482 REMARK 465 PRO A 1666 REMARK 465 GLN A 1910 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A1564 CG CD OE1 NE2 REMARK 470 SER A1665 OG REMARK 470 ASN A1667 CG OD1 ND2 REMARK 470 GLU A1695 CG CD OE1 OE2 REMARK 470 GLU A1783 CG CD OE1 OE2 REMARK 470 ARG A1843 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1844 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1600 48.75 -93.72 REMARK 500 PRO A1668 -111.20 -87.73 REMARK 500 GLU A1695 31.86 -85.74 REMARK 500 ASN A1839 59.55 -112.15 REMARK 500 ARG A1844 30.04 -86.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A1520 O REMARK 620 2 HIS A1521 O 72.8 REMARK 620 3 ASN A1621 OD1 76.9 92.3 REMARK 620 4 GLN A1855 O 88.5 86.6 165.0 REMARK 620 5 HOH A2111 O 103.8 168.6 97.6 82.4 REMARK 620 6 HOH A2285 O 157.2 121.8 84.6 108.7 65.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7JTJ RELATED DB: PDB REMARK 900 7JTJ CONTAINS THE SAME PROTEIN AT HIGHER RESOLUTION, BUT WITH REMARK 900 INCREASED DISORDER IN A LOOP BETWEEN THE N- AND C-TERMINAL PROTEIN REMARK 900 HALVES DBREF 7JUA A 1480 1910 UNP Q9Z399 Q9Z399_YERPE 1486 1916 SEQADV 7JUA MET A 1459 UNP Q9Z399 INITIATING METHIONINE SEQADV 7JUA GLY A 1460 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA SER A 1461 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA SER A 1462 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA HIS A 1463 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA HIS A 1464 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA HIS A 1465 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA HIS A 1466 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA HIS A 1467 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA HIS A 1468 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA SER A 1469 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA SER A 1470 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA GLY A 1471 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA LEU A 1472 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA VAL A 1473 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA PRO A 1474 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA ARG A 1475 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA GLY A 1476 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA SER A 1477 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA HIS A 1478 UNP Q9Z399 EXPRESSION TAG SEQADV 7JUA MET A 1479 UNP Q9Z399 EXPRESSION TAG SEQRES 1 A 452 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 452 LEU VAL PRO ARG GLY SER HIS MET PRO VAL GLU GLN PRO SEQRES 3 A 452 PHE VAL HIS SER PRO GLU ASP ARG TYR GLN PRO PHE ALA SEQRES 4 A 452 LEU THR ASP VAL GLN GLN ALA TYR LEU VAL GLY ARG GLN SEQRES 5 A 452 PRO GLY PHE ALA LEU GLY GLY VAL GLY SER HIS PHE PHE SEQRES 6 A 452 VAL GLU PHE GLU ILE ALA ASP LEU ASP LEU THR ARG LEU SEQRES 7 A 452 GLU THR VAL TRP ASN ARG LEU ILE ALA ARG HIS ASP MET SEQRES 8 A 452 LEU ARG ALA ILE VAL ARG ASP GLY GLN GLN GLN VAL LEU SEQRES 9 A 452 GLU GLN THR PRO PRO TRP VAL ILE PRO ALA HIS THR LEU SEQRES 10 A 452 HIS THR PRO GLU GLU ALA LEU ARG VAL ARG GLU LYS LEU SEQRES 11 A 452 ALA HIS GLN VAL LEU ASN PRO GLU VAL TRP PRO VAL PHE SEQRES 12 A 452 ASP LEU GLN VAL GLY TYR VAL ASP GLY MET PRO ALA ARG SEQRES 13 A 452 LEU TRP LEU CYS LEU ASP ASN LEU LEU LEU ASP GLY LEU SEQRES 14 A 452 SER MET GLN ILE LEU LEU ALA GLU LEU GLU HIS GLY TYR SEQRES 15 A 452 ARG TYR PRO GLN GLN LEU LEU PRO PRO LEU PRO VAL THR SEQRES 16 A 452 PHE ARG ASP TYR LEU GLN GLN PRO SER LEU GLN SER PRO SEQRES 17 A 452 ASN PRO ASP SER LEU ALA TRP TRP GLN ALA GLN LEU ASP SEQRES 18 A 452 ASP ILE PRO PRO ALA PRO ALA LEU PRO LEU ARG CYS LEU SEQRES 19 A 452 PRO GLN GLU VAL GLU THR PRO ARG PHE ALA ARG LEU ASN SEQRES 20 A 452 GLY ALA LEU ASP SER THR ARG TRP HIS ARG LEU LYS LYS SEQRES 21 A 452 ARG ALA ALA ASP ALA HIS LEU THR PRO SER ALA VAL LEU SEQRES 22 A 452 LEU SER VAL TRP SER THR VAL LEU SER ALA TRP SER ALA SEQRES 23 A 452 GLN PRO GLU PHE THR LEU ASN LEU THR LEU PHE ASP ARG SEQRES 24 A 452 ARG PRO LEU HIS PRO GLN ILE ASN GLN ILE LEU GLY ASP SEQRES 25 A 452 PHE THR SER LEU MET LEU LEU SER TRP HIS PRO GLY GLU SEQRES 26 A 452 SER TRP LEU HIS SER ALA GLN SER LEU GLN GLN ARG LEU SEQRES 27 A 452 SER GLN ASN LEU ASN HIS ARG ASP VAL SER ALA ILE ARG SEQRES 28 A 452 VAL MET ARG GLN LEU ALA GLN ARG GLN ASN VAL PRO ALA SEQRES 29 A 452 VAL PRO MET PRO VAL VAL PHE THR SER ALA LEU GLY PHE SEQRES 30 A 452 GLU GLN ASP ASN PHE LEU ALA ARG ARG ASN LEU LEU LYS SEQRES 31 A 452 PRO VAL TRP GLY ILE SER GLN THR PRO GLN VAL TRP LEU SEQRES 32 A 452 ASP HIS GLN ILE TYR GLU SER GLU GLY GLU LEU ARG PHE SEQRES 33 A 452 ASN TRP ASP PHE VAL ALA ALA LEU PHE PRO ALA GLY GLN SEQRES 34 A 452 VAL GLU ARG GLN PHE GLU GLN TYR CYS ALA LEU LEU ASN SEQRES 35 A 452 ARG MET ALA GLU ASP GLU SER GLY TRP GLN HET NA A2001 1 HET PG0 A2002 8 HETNAM NA SODIUM ION HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETSYN PG0 PEG 6000 FORMUL 2 NA NA 1+ FORMUL 3 PG0 C5 H12 O3 FORMUL 4 HOH *227(H2 O) HELIX 1 AA1 SER A 1488 ARG A 1492 5 5 HELIX 2 AA2 THR A 1499 ARG A 1509 1 11 HELIX 3 AA3 ASP A 1532 HIS A 1547 1 16 HELIX 4 AA4 ASP A 1548 LEU A 1550 5 3 HELIX 5 AA5 THR A 1577 HIS A 1590 1 14 HELIX 6 AA6 ASP A 1625 TYR A 1642 1 18 HELIX 7 AA7 THR A 1653 GLN A 1660 1 8 HELIX 8 AA8 PRO A 1661 SER A 1665 5 5 HELIX 9 AA9 PRO A 1668 ALA A 1676 1 9 HELIX 10 AB1 GLN A 1677 ILE A 1681 5 5 HELIX 11 AB2 LEU A 1692 VAL A 1696 5 5 HELIX 12 AB3 ASP A 1709 ALA A 1723 1 15 HELIX 13 AB4 THR A 1726 SER A 1743 1 18 HELIX 14 AB5 GLN A 1763 ILE A 1767 5 5 HELIX 15 AB6 SER A 1784 ASN A 1801 1 18 HELIX 16 AB7 SER A 1806 ASN A 1819 1 14 HELIX 17 AB8 ALA A 1881 PHE A 1883 5 3 HELIX 18 AB9 GLY A 1886 ASP A 1905 1 20 SHEET 1 AA1 5 ALA A1572 LEU A1575 0 SHEET 2 AA1 5 PHE A1601 VAL A1608 1 O TYR A1607 N LEU A1575 SHEET 3 AA1 5 ALA A1613 ASP A1620 -1 O ARG A1614 N GLY A1606 SHEET 4 AA1 5 HIS A1521 ILE A1528 -1 N PHE A1522 O LEU A1619 SHEET 5 AA1 5 LYS A1848 SER A1854 -1 O TRP A1851 N GLU A1525 SHEET 1 AA2 2 ALA A1552 ARG A1555 0 SHEET 2 AA2 2 GLN A1558 VAL A1561 -1 O GLN A1558 N ARG A1555 SHEET 1 AA3 6 PHE A1701 LEU A1708 0 SHEET 2 AA3 6 GLU A1871 VAL A1879 -1 O TRP A1876 N LEU A1704 SHEET 3 AA3 6 LEU A1861 SER A1868 -1 N ASP A1862 O ASP A1877 SHEET 4 AA3 6 VAL A1827 SER A1831 1 N THR A1830 O HIS A1863 SHEET 5 AA3 6 PHE A1748 LEU A1754 1 N THR A1753 O PHE A1829 SHEET 6 AA3 6 SER A1773 TRP A1779 -1 O MET A1775 N LEU A1752 LINK O SER A1520 NA NA A2001 1555 1555 2.68 LINK O HIS A1521 NA NA A2001 1555 1555 2.91 LINK OD1 ASN A1621 NA NA A2001 1555 1555 2.37 LINK O GLN A1855 NA NA A2001 1555 1555 2.35 LINK NA NA A2001 O HOH A2111 1555 1555 2.69 LINK NA NA A2001 O HOH A2285 1555 1555 2.72 CISPEP 1 TRP A 1598 PRO A 1599 0 1.31 CRYST1 89.271 89.271 140.058 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007140 0.00000