HEADER SIGNALING PROTEIN, HYDROLASE 19-AUG-20 7JUK TITLE CRYSTAL STRUCTURE OF PTEN WITH A TETRA-PHOSPHORYLATED TAIL (4P-CRPTEN- TITLE 2 13SP-T2, SDTTDSDPENEG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND COMPND 3 DUAL-SPECIFICITY PROTEIN PHOSPHATASE PTEN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MUTATED IN MULTIPLE ADVANCED CANCERS 1,PHOSPHATASE AND COMPND 6 TENSIN HOMOLOG; COMPND 7 EC: 3.1.3.16,3.1.3.48,3.1.3.67; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTEN, MMAC1, TEP1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS PHOSPHATASE, PHOSPHATIDYLINOSITOL 3, 4, 5-TRISPHOSPHATE 3-PHOSPHATASE KEYWDS 2 AND DUAL-SPECIFICITY PROTEIN PHOSPHATASE PTEN, SIGNALING PROTEIN, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.DEMPSEY,K.PHAN,P.COLE,S.B.GABELLI REVDAT 3 18-OCT-23 7JUK 1 REMARK REVDAT 2 02-MAR-22 7JUK 1 JRNL REVDAT 1 13-OCT-21 7JUK 0 JRNL AUTH D.R.DEMPSEY,T.VIENNET,R.IWASE,E.PARK,S.HENRIQUEZ,Z.CHEN, JRNL AUTH 2 J.R.JELIAZKOV,B.A.PALANSKI,K.L.PHAN,P.COOTE,J.J.GRAY, JRNL AUTH 3 M.J.ECK,S.B.GABELLI,H.ARTHANARI,P.A.COLE JRNL TITL THE STRUCTURAL BASIS OF PTEN REGULATION BY MULTI-SITE JRNL TITL 2 PHOSPHORYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 28 858 2021 JRNL REFN ESSN 1545-9985 JRNL PMID 34625746 JRNL DOI 10.1038/S41594-021-00668-5 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 6023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 11 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.77000 REMARK 3 B22 (A**2) : -3.77000 REMARK 3 B33 (A**2) : 7.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.613 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.487 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.893 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2699 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2473 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3639 ; 1.408 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5741 ; 1.129 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 7.457 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;36.034 ;21.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;17.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.693 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2983 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7JUK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6346 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 80.217 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.71500 REMARK 200 R SYM FOR SHELL (I) : 0.71500 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1D5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M DL-MALIC ACID, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.72200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.72200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.50250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.72200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.72200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.50250 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 56.72200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 56.72200 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.50250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 56.72200 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 56.72200 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.50250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 GLY A 306 REMARK 465 PRO A 307 REMARK 465 GLU A 308 REMARK 465 GLU A 309 REMARK 465 ASP A 310 REMARK 465 ASN A 311 REMARK 465 ASP A 312 REMARK 465 LYS A 313 REMARK 465 GLU A 352 REMARK 465 GLU A 353 REMARK 465 THR A 354 REMARK 465 GLY A 355 REMARK 465 GLY A 356 REMARK 465 GLY A 357 REMARK 465 SER A 358 REMARK 465 GLY A 359 REMARK 465 GLY A 360 REMARK 465 THR A 361 REMARK 465 GLY A 362 REMARK 465 GLY A 363 REMARK 465 CYS A 364 REMARK 465 ARG A 365 REMARK 465 TYR A 366 REMARK 465 SER A 367 REMARK 465 ASP A 368 REMARK 465 THR A 369 REMARK 465 THR A 370 REMARK 465 ASP A 371 REMARK 465 SER A 372 REMARK 465 ASP A 373 REMARK 465 PRO A 374 REMARK 465 GLU A 375 REMARK 465 ASN A 376 REMARK 465 GLU A 377 REMARK 465 GLY A 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 43 O4 PO4 A 401 6444 1.93 REMARK 500 NH1 ARG A 84 OD1 ASP A 236 4555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 38 N PRO A 38 CA 0.225 REMARK 500 PRO A 89 N PRO A 89 CA 0.222 REMARK 500 PRO A 95 N PRO A 95 CA 0.216 REMARK 500 ARG A 189 C PRO A 190 N 0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 38 C - N - CA ANGL. DEV. = 20.0 DEGREES REMARK 500 PRO A 38 CA - N - CD ANGL. DEV. = -11.0 DEGREES REMARK 500 PRO A 89 C - N - CA ANGL. DEV. = 22.3 DEGREES REMARK 500 PRO A 89 CA - N - CD ANGL. DEV. = -11.6 DEGREES REMARK 500 PRO A 95 C - N - CA ANGL. DEV. = 18.8 DEGREES REMARK 500 PRO A 95 CA - N - CD ANGL. DEV. = -10.6 DEGREES REMARK 500 PRO A 190 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 PRO A 190 C - N - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 17 -140.53 -150.58 REMARK 500 PHE A 21 -161.38 -120.47 REMARK 500 ARG A 47 -53.12 -123.89 REMARK 500 LYS A 62 -77.14 -49.49 REMARK 500 CYS A 83 -179.59 -170.32 REMARK 500 TYR A 88 51.60 -150.64 REMARK 500 PRO A 89 107.92 -50.81 REMARK 500 SER A 113 -8.70 -54.12 REMARK 500 ASN A 117 50.89 -109.00 REMARK 500 CYS A 124 -134.31 -124.89 REMARK 500 LYS A 128 -91.79 -124.35 REMARK 500 LEU A 146 13.42 -156.01 REMARK 500 ALA A 148 -62.94 60.21 REMARK 500 LYS A 164 -74.09 -105.20 REMARK 500 THR A 202 158.08 74.10 REMARK 500 LEU A 220 -120.92 58.95 REMARK 500 ASP A 236 -90.17 59.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 DBREF 7JUK A 7 309 UNP P60484 PTEN_HUMAN 7 285 DBREF 7JUK A 310 353 UNP P60484 PTEN_HUMAN 310 353 DBREF 7JUK A 365 377 UNP P60484 PTEN_HUMAN 378 390 SEQADV 7JUK MET A 6 UNP P60484 INITIATING METHIONINE SEQADV 7JUK THR A 354 UNP P60484 LINKER SEQADV 7JUK GLY A 355 UNP P60484 LINKER SEQADV 7JUK GLY A 356 UNP P60484 LINKER SEQADV 7JUK GLY A 357 UNP P60484 LINKER SEQADV 7JUK SER A 358 UNP P60484 LINKER SEQADV 7JUK GLY A 359 UNP P60484 LINKER SEQADV 7JUK GLY A 360 UNP P60484 LINKER SEQADV 7JUK THR A 361 UNP P60484 LINKER SEQADV 7JUK GLY A 362 UNP P60484 LINKER SEQADV 7JUK GLY A 363 UNP P60484 LINKER SEQADV 7JUK CYS A 364 UNP P60484 LINKER SEQADV 7JUK GLY A 378 UNP P60484 CLONING ARTIFACT SEQRES 1 A 349 MET GLU ILE VAL SER ARG ASN LYS ARG ARG TYR GLN GLU SEQRES 2 A 349 ASP GLY PHE ASP LEU ASP LEU THR TYR ILE TYR PRO ASN SEQRES 3 A 349 ILE ILE ALA MET GLY PHE PRO ALA GLU ARG LEU GLU GLY SEQRES 4 A 349 VAL TYR ARG ASN ASN ILE ASP ASP VAL VAL ARG PHE LEU SEQRES 5 A 349 ASP SER LYS HIS LYS ASN HIS TYR LYS ILE TYR ASN LEU SEQRES 6 A 349 CYS ALA GLU ARG HIS TYR ASP THR ALA LYS PHE ASN CYS SEQRES 7 A 349 ARG VAL ALA GLN TYR PRO PHE GLU ASP HIS ASN PRO PRO SEQRES 8 A 349 GLN LEU GLU LEU ILE LYS PRO PHE CYS GLU ASP LEU ASP SEQRES 9 A 349 GLN TRP LEU SER GLU ASP ASP ASN HIS VAL ALA ALA ILE SEQRES 10 A 349 HIS CYS LYS ALA GLY LYS GLY ARG THR GLY VAL MET ILE SEQRES 11 A 349 CYS ALA TYR LEU LEU HIS ARG GLY LYS PHE LEU LYS ALA SEQRES 12 A 349 GLN GLU ALA LEU ASP PHE TYR GLY GLU VAL ARG THR ARG SEQRES 13 A 349 ASP LYS LYS GLY VAL THR ILE PRO SER GLN ARG ARG TYR SEQRES 14 A 349 VAL TYR TYR TYR SER TYR LEU LEU LYS ASN HIS LEU ASP SEQRES 15 A 349 TYR ARG PRO VAL ALA LEU LEU PHE HIS LYS MET MET PHE SEQRES 16 A 349 GLU THR ILE PRO MET PHE SER GLY GLY THR CYS ASN PRO SEQRES 17 A 349 GLN PHE VAL VAL CYS GLN LEU LYS VAL LYS ILE TYR SER SEQRES 18 A 349 SER ASN SER GLY PRO THR ARG ARG GLU ASP LYS PHE MET SEQRES 19 A 349 TYR PHE GLU PHE PRO GLN PRO LEU PRO VAL CYS GLY ASP SEQRES 20 A 349 ILE LYS VAL GLU PHE PHE HIS LYS GLN ASN LYS MET LEU SEQRES 21 A 349 LYS LYS ASP LYS MET PHE HIS PHE TRP VAL ASN THR PHE SEQRES 22 A 349 PHE ILE PRO GLY PRO GLU GLU ASP ASN ASP LYS GLU TYR SEQRES 23 A 349 LEU VAL LEU THR LEU THR LYS ASN ASP LEU ASP LYS ALA SEQRES 24 A 349 ASN LYS ASP LYS ALA ASN ARG TYR PHE SER PRO ASN PHE SEQRES 25 A 349 LYS VAL LYS LEU TYR PHE THR LYS THR VAL GLU GLU THR SEQRES 26 A 349 GLY GLY GLY SER GLY GLY THR GLY GLY CYS ARG TYR SER SEQRES 27 A 349 ASP THR THR ASP SER ASP PRO GLU ASN GLU GLY HET PO4 A 401 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *(H2 O) HELIX 1 AA1 GLU A 7 ASN A 12 1 6 HELIX 2 AA2 ASN A 49 HIS A 61 1 13 HELIX 3 AA3 ASP A 77 PHE A 81 5 5 HELIX 4 AA4 GLN A 97 ASP A 115 1 19 HELIX 5 AA5 LYS A 128 GLY A 143 1 16 HELIX 6 AA6 ALA A 148 THR A 160 1 13 HELIX 7 AA7 ILE A 168 HIS A 185 1 18 HELIX 8 AA8 PHE A 278 ILE A 280 5 3 HELIX 9 AA9 ASN A 323 LEU A 325 5 3 HELIX 10 AB1 LYS A 327 ASP A 331 5 5 SHEET 1 AA1 5 LEU A 25 TYR A 29 0 SHEET 2 AA1 5 ILE A 32 MET A 35 -1 O ALA A 34 N THR A 26 SHEET 3 AA1 5 VAL A 119 HIS A 123 1 O ALA A 120 N ILE A 33 SHEET 4 AA1 5 TYR A 65 CYS A 71 1 N LYS A 66 O ALA A 121 SHEET 5 AA1 5 VAL A 85 PHE A 90 1 O ALA A 86 N ILE A 67 SHEET 1 AA2 5 ARG A 233 GLU A 235 0 SHEET 2 AA2 5 PHE A 238 CYS A 250 -1 O PHE A 238 N GLU A 235 SHEET 3 AA2 5 ALA A 192 GLU A 201 -1 N PHE A 200 O MET A 239 SHEET 4 AA2 5 LYS A 342 LYS A 349 -1 O TYR A 346 N HIS A 196 SHEET 5 AA2 5 LEU A 316 THR A 321 -1 N LEU A 316 O PHE A 347 SHEET 1 AA3 4 VAL A 222 SER A 226 0 SHEET 2 AA3 4 PRO A 213 GLN A 219 -1 N VAL A 217 O TYR A 225 SHEET 3 AA3 4 ASP A 252 HIS A 259 -1 O LYS A 254 N CYS A 218 SHEET 4 AA3 4 ASP A 268 ASN A 276 -1 O VAL A 275 N ILE A 253 SITE 1 AC1 3 GLU A 43 LYS A 332 HOH A 501 CRYST1 113.444 113.444 57.005 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017542 0.00000