HEADER BIOSYNTHETIC PROTEIN 26-AUG-20 7JX1
TITLE E. COLI TSASE COMPLEX WITH A BI-SUBSTRATE REACTION INTERMEDIATE ANALOG
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: TSASE;
COMPND 5 EC: 2.1.1.45;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 562;
SOURCE 4 GENE: THYA;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS NON COVALENT INTERMEDIATE, HALF-SITES ACTIVITY, TMP SYNTHESIS,
KEYWDS 2 INHIBITOR, BIOSYNTHETIC PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.FINER-MOORE,S.A.KHOLODAR,R.M.STROUD,A.KOHEN
REVDAT 4 25-DEC-24 7JX1 1 LINK
REVDAT 3 18-OCT-23 7JX1 1 REMARK
REVDAT 2 05-MAY-21 7JX1 1 JRNL
REVDAT 1 21-APR-21 7JX1 0
JRNL AUTH S.A.KHOLODAR,J.S.FINER-MOORE,K.SWIDEREK,K.ARAFET,V.MOLINER,
JRNL AUTH 2 R.M.STROUD,A.KOHEN
JRNL TITL CAUGHT IN ACTION: X-RAY STRUCTURE OF THYMIDYLATE SYNTHASE
JRNL TITL 2 WITH NONCOVALENT INTERMEDIATE ANALOG.
JRNL REF BIOCHEMISTRY V. 60 1243 2021
JRNL REFN ISSN 0006-2960
JRNL PMID 33829766
JRNL DOI 10.1021/ACS.BIOCHEM.1C00063
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH S.A.KHOLODAR,A.K.GHOSH,K.SWIDEREK,V.MOLINER,A.KOHEN
REMARK 1 TITL PARALLEL REACTION PATHWAYS AND NONCOVALENT INTERMEDIATES IN
REMARK 1 TITL 2 THYMIDYLATE SYNTHASE REVEALED BY EXPERIMENTAL AND
REMARK 1 TITL 3 COMPUTATIONAL TOOLS.
REMARK 1 REF PROC. NATL. ACAD. SCI. V. 115 10311 2018
REMARK 1 REF 2 U.S.A.
REMARK 1 REFN ESSN 1091-6490
REMARK 1 PMID 30249644
REMARK 1 DOI 10.1073/PNAS.1811059115
REMARK 2
REMARK 2 RESOLUTION. 1.82 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 109.10
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4
REMARK 3 NUMBER OF REFLECTIONS : 53310
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.152
REMARK 3 R VALUE (WORKING SET) : 0.151
REMARK 3 FREE R VALUE : 0.190
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.720
REMARK 3 FREE R VALUE TEST SET COUNT : 1984
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1109.1000 - 4.3900 1.00 3878 154 0.1424 0.1774
REMARK 3 2 4.3800 - 3.4800 1.00 3780 142 0.1150 0.1423
REMARK 3 3 3.4800 - 3.0400 1.00 3784 148 0.1448 0.1609
REMARK 3 4 3.0400 - 2.7600 1.00 3765 145 0.1581 0.2147
REMARK 3 5 2.7600 - 2.5600 1.00 3755 149 0.1517 0.2104
REMARK 3 6 2.5600 - 2.4100 1.00 3778 147 0.1467 0.1978
REMARK 3 7 2.4100 - 2.2900 1.00 3767 142 0.1449 0.2033
REMARK 3 8 2.2900 - 2.1900 1.00 3730 146 0.1502 0.2186
REMARK 3 9 2.1900 - 2.1100 1.00 3776 146 0.1602 0.1965
REMARK 3 10 2.1100 - 2.0400 1.00 3721 147 0.1734 0.2325
REMARK 3 11 2.0400 - 1.9700 1.00 3750 142 0.2038 0.2778
REMARK 3 12 1.9700 - 1.9200 1.00 3738 142 0.2591 0.2965
REMARK 3 13 1.9200 - 1.8600 0.97 3620 141 0.3334 0.3643
REMARK 3 14 1.8600 - 1.8200 0.66 2484 93 0.3866 0.4259
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.256
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.457
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 35.33
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.84
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.012 4916
REMARK 3 ANGLE : 1.200 6736
REMARK 3 CHIRALITY : 0.061 694
REMARK 3 PLANARITY : 0.007 882
REMARK 3 DIHEDRAL : 19.274 706
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): -30.2852 27.1076 -11.3719
REMARK 3 T TENSOR
REMARK 3 T11: 0.2363 T22: 0.2312
REMARK 3 T33: 0.2425 T12: -0.0028
REMARK 3 T13: -0.0049 T23: -0.0275
REMARK 3 L TENSOR
REMARK 3 L11: 0.7648 L22: 0.7531
REMARK 3 L33: 0.6933 L12: 0.0747
REMARK 3 L13: -0.2553 L23: 0.0782
REMARK 3 S TENSOR
REMARK 3 S11: 0.0114 S12: -0.0415 S13: 0.1627
REMARK 3 S21: 0.0237 S22: 0.0115 S23: 0.0653
REMARK 3 S31: -0.0384 S32: 0.0026 S33: -0.0258
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7JX1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-20.
REMARK 100 THE DEPOSITION ID IS D_1000251127.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-MAR-19
REMARK 200 TEMPERATURE (KELVIN) : 173
REMARK 200 PH : 7.1-7.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 8.3.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.116
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53762
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820
REMARK 200 RESOLUTION RANGE LOW (A) : 109.100
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1
REMARK 200 DATA REDUNDANCY : 17.73
REMARK 200 R MERGE (I) : 0.10300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3400
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87
REMARK 200 COMPLETENESS FOR SHELL (%) : 76.8
REMARK 200 DATA REDUNDANCY IN SHELL : 7.34
REMARK 200 R MERGE FOR SHELL (I) : 3.46900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.540
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660
REMARK 200 STARTING MODEL: 6NNR
REMARK 200
REMARK 200 REMARK: HEXAGONAL RODS
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.27
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 5.5 MG/ML PROTEIN, 3.3 MM INHIBITOR
REMARK 280 AND 5 MM DTT AGAINST 1.3M NACITRATE, 0.1M HEPES PH7.5, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z
REMARK 290 3555 -X+Y,-X,Z
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/2
REMARK 290 6555 X-Y,X,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.67000
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.67000
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.67000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19350 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 233 NZ
REMARK 470 GLU A 237 CD OE1 OE2
REMARK 470 GLU B 237 CD OE1 OE2
REMARK 470 GLU B 248 CD OE1 OE2
REMARK 470 LYS B 259 CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HH22 ARG A 21 O HOH A 406 1.56
REMARK 500 HZ2 LYS B 96 O HOH B 405 1.57
REMARK 500 OD2 ASP B 139 O HOH B 401 1.98
REMARK 500 O HOH B 485 O HOH B 489 2.03
REMARK 500 OE2 GLU A 6 O HOH A 401 2.06
REMARK 500 O HOH A 463 O HOH A 481 2.10
REMARK 500 NH2 ARG B 53 O ASN B 76 2.14
REMARK 500 OE2 GLU A 223 O HOH A 402 2.15
REMARK 500 O HOH A 526 O HOH B 414 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 LYS A 229 CD LYS A 229 CE 0.165
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LYS A 229 CD - CE - NZ ANGL. DEV. = 18.3 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 21 92.21 -36.62
REMARK 500 THR A 22 -102.86 56.09
REMARK 500 ALA A 100 56.00 -160.57
REMARK 500 ASP A 122 56.80 -144.50
REMARK 500 GLU B 74 -19.02 -48.90
REMARK 500 VAL B 93 -158.34 -88.70
REMARK 500 ALA B 100 58.56 -157.28
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 THR A 22 GLY A 23 142.77
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 569 DISTANCE = 6.94 ANGSTROMS
DBREF1 7JX1 A 1 264 UNP A0A029ILG4_ECOLX
DBREF2 7JX1 A A0A029ILG4 1 264
DBREF1 7JX1 B 1 264 UNP A0A029ILG4_ECOLX
DBREF2 7JX1 B A0A029ILG4 1 264
SEQRES 1 A 264 CXM LYS GLN TYR LEU GLU LEU MET GLN LYS VAL LEU ASP
SEQRES 2 A 264 GLU GLY THR GLN LYS ASN ASP ARG THR GLY THR GLY THR
SEQRES 3 A 264 LEU SER ILE PHE GLY HIS GLN MET ARG PHE ASN LEU GLN
SEQRES 4 A 264 ASP GLY PHE PRO LEU VAL THR THR LYS ARG CYS HIS LEU
SEQRES 5 A 264 ARG SER ILE ILE HIS GLU LEU LEU TRP PHE LEU GLN GLY
SEQRES 6 A 264 ASP THR ASN ILE ALA TYR LEU HIS GLU ASN ASN VAL THR
SEQRES 7 A 264 ILE TRP ASP GLU TRP ALA ASP GLU ASN GLY ASP LEU GLY
SEQRES 8 A 264 PRO VAL TYR GLY LYS GLN TRP ARG ALA TRP PRO THR PRO
SEQRES 9 A 264 ASP GLY ARG HIS ILE ASP GLN ILE THR THR VAL LEU ASN
SEQRES 10 A 264 GLN LEU LYS ASN ASP PRO ASP SER ARG ARG ILE ILE VAL
SEQRES 11 A 264 SER ALA TRP ASN VAL GLY GLU LEU ASP LYS MET ALA LEU
SEQRES 12 A 264 ALA PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA ASP
SEQRES 13 A 264 GLY LYS LEU SER CYS GLN LEU TYR GLN ARG SER CYS ASP
SEQRES 14 A 264 VAL PHE LEU GLY LEU PRO PHE ASN ILE ALA SER TYR ALA
SEQRES 15 A 264 LEU LEU VAL HIS MET MET ALA GLN GLN CYS ASP LEU GLU
SEQRES 16 A 264 VAL GLY ASP PHE VAL TRP THR GLY GLY ASP THR HIS LEU
SEQRES 17 A 264 TYR SER ASN HIS MET ASP GLN THR HIS LEU GLN LEU SER
SEQRES 18 A 264 ARG GLU PRO ARG PRO LEU PRO LYS LEU ILE ILE LYS ARG
SEQRES 19 A 264 LYS PRO GLU SER ILE PHE ASP TYR ARG PHE GLU ASP PHE
SEQRES 20 A 264 GLU ILE GLU GLY TYR ASP PRO HIS PRO GLY ILE LYS ALA
SEQRES 21 A 264 PRO VAL ALA ILE
SEQRES 1 B 264 CXM LYS GLN TYR LEU GLU LEU MET GLN LYS VAL LEU ASP
SEQRES 2 B 264 GLU GLY THR GLN LYS ASN ASP ARG THR GLY THR GLY THR
SEQRES 3 B 264 LEU SER ILE PHE GLY HIS GLN MET ARG PHE ASN LEU GLN
SEQRES 4 B 264 ASP GLY PHE PRO LEU VAL THR THR LYS ARG CYS HIS LEU
SEQRES 5 B 264 ARG SER ILE ILE HIS GLU LEU LEU TRP PHE LEU GLN GLY
SEQRES 6 B 264 ASP THR ASN ILE ALA TYR LEU HIS GLU ASN ASN VAL THR
SEQRES 7 B 264 ILE TRP ASP GLU TRP ALA ASP GLU ASN GLY ASP LEU GLY
SEQRES 8 B 264 PRO VAL TYR GLY LYS GLN TRP ARG ALA TRP PRO THR PRO
SEQRES 9 B 264 ASP GLY ARG HIS ILE ASP GLN ILE THR THR VAL LEU ASN
SEQRES 10 B 264 GLN LEU LYS ASN ASP PRO ASP SER ARG ARG ILE ILE VAL
SEQRES 11 B 264 SER ALA TRP ASN VAL GLY GLU LEU ASP LYS MET ALA LEU
SEQRES 12 B 264 ALA PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA ASP
SEQRES 13 B 264 GLY LYS LEU SER CYS GLN LEU TYR GLN ARG SER CYS ASP
SEQRES 14 B 264 VAL PHE LEU GLY LEU PRO PHE ASN ILE ALA SER TYR ALA
SEQRES 15 B 264 LEU LEU VAL HIS MET MET ALA GLN GLN CYS ASP LEU GLU
SEQRES 16 B 264 VAL GLY ASP PHE VAL TRP THR GLY GLY ASP THR HIS LEU
SEQRES 17 B 264 TYR SER ASN HIS MET ASP GLN THR HIS LEU GLN LEU SER
SEQRES 18 B 264 ARG GLU PRO ARG PRO LEU PRO LYS LEU ILE ILE LYS ARG
SEQRES 19 B 264 LYS PRO GLU SER ILE PHE ASP TYR ARG PHE GLU ASP PHE
SEQRES 20 B 264 GLU ILE GLU GLY TYR ASP PRO HIS PRO GLY ILE LYS ALA
SEQRES 21 B 264 PRO VAL ALA ILE
MODRES 7JX1 CXM A 1 MET MODIFIED RESIDUE
MODRES 7JX1 CXM B 1 MET MODIFIED RESIDUE
HET CXM A 1 20
HET CXM B 1 20
HET VLA A 301 32
HET TMP A 302 34
HET VLD B 301 109
HET PO4 B 302 5
HETNAM CXM N-CARBOXYMETHIONINE
HETNAM VLA N-(4-{[(2,4-DIAMINO-7,8-DIHYDROPYRIDO[3,2-D]PYRIMIDIN-
HETNAM 2 VLA 6-YL)METHYL]AMINO}BENZENE-1-CARBONYL)-L-GLUTAMIC ACID
HETNAM TMP THYMIDINE-5'-PHOSPHATE
HETNAM VLD (2S)-2-({4-[({(6R)-2,4-DIAMINO-5-[(1-{(2R,4S,5R)-4-
HETNAM 2 VLD HYDROXY-5-[(PHOSPHONOOXY)METHYL]TETRAHYDROFURAN-2-YL}-
HETNAM 3 VLD 2,4-DIOXO-1,2,3,4-TETRAHYDROPYRIMIDIN-5-YL)METHYL]-5,
HETNAM 4 VLD 6,7,8-TETRAHYDROPYRIDO[3,2-D]PYRIMIDIN-6-YL}METHYL)
HETNAM 5 VLD AMINO]BENZOYL}AMINO)PENTANEDIOIC ACID (NON-PREFERRED
HETNAM 6 VLD NAME)
HETNAM PO4 PHOSPHATE ION
FORMUL 1 CXM 2(C6 H11 N O4 S)
FORMUL 3 VLA C20 H23 N7 O5
FORMUL 4 TMP C10 H15 N2 O8 P
FORMUL 5 VLD C30 H38 N9 O13 P
FORMUL 6 PO4 O4 P 3-
FORMUL 7 HOH *263(H2 O)
HELIX 1 AA1 CXM A 1 GLY A 15 1 15
HELIX 2 AA2 GLN A 39 GLY A 41 5 3
HELIX 3 AA3 HIS A 51 GLN A 64 1 14
HELIX 4 AA4 ILE A 69 ASN A 75 1 7
HELIX 5 AA5 TRP A 80 ALA A 84 5 5
HELIX 6 AA6 VAL A 93 ALA A 100 1 8
HELIX 7 AA7 ASP A 110 ASP A 122 1 13
HELIX 8 AA8 ASN A 134 MET A 141 5 8
HELIX 9 AA9 GLY A 173 CYS A 192 1 20
HELIX 10 AB1 HIS A 212 SER A 221 1 10
HELIX 11 AB2 ARG A 243 GLU A 245 5 3
HELIX 12 AB3 LYS B 2 GLY B 15 1 14
HELIX 13 AB4 HIS B 51 GLN B 64 1 14
HELIX 14 AB5 ILE B 69 ASN B 75 1 7
HELIX 15 AB6 VAL B 93 ALA B 100 1 8
HELIX 16 AB7 ASP B 110 ASP B 122 1 13
HELIX 17 AB8 ASN B 134 MET B 141 5 8
HELIX 18 AB9 LEU B 172 CYS B 192 1 21
HELIX 19 AC1 HIS B 212 SER B 221 1 10
HELIX 20 AC2 ARG B 243 GLU B 245 5 3
SHEET 1 AA1 6 THR A 16 LYS A 18 0
SHEET 2 AA1 6 THR A 26 ASN A 37 -1 O THR A 26 N LYS A 18
SHEET 3 AA1 6 GLU A 195 TYR A 209 -1 O TRP A 201 N MET A 34
SHEET 4 AA1 6 LYS A 158 ASP A 169 1 N GLN A 165 O THR A 202
SHEET 5 AA1 6 HIS A 147 ALA A 155 -1 N TYR A 153 O SER A 160
SHEET 6 AA1 6 ILE A 129 SER A 131 -1 N VAL A 130 O PHE A 150
SHEET 1 AA2 2 TRP A 101 PRO A 102 0
SHEET 2 AA2 2 HIS A 108 ILE A 109 -1 O ILE A 109 N TRP A 101
SHEET 1 AA3 2 LYS A 229 ILE A 232 0
SHEET 2 AA3 2 PHE A 247 GLU A 250 -1 O GLU A 250 N LYS A 229
SHEET 1 AA4 6 THR B 16 LYS B 18 0
SHEET 2 AA4 6 THR B 26 ASN B 37 -1 O SER B 28 N THR B 16
SHEET 3 AA4 6 GLU B 195 TYR B 209 -1 O PHE B 199 N PHE B 36
SHEET 4 AA4 6 LYS B 158 ASP B 169 1 N LEU B 159 O GLU B 195
SHEET 5 AA4 6 HIS B 147 ALA B 155 -1 N TYR B 153 O SER B 160
SHEET 6 AA4 6 ILE B 128 SER B 131 -1 N ILE B 128 O PHE B 152
SHEET 1 AA5 2 TRP B 101 PRO B 102 0
SHEET 2 AA5 2 HIS B 108 ILE B 109 -1 O ILE B 109 N TRP B 101
SHEET 1 AA6 2 LYS B 229 ILE B 232 0
SHEET 2 AA6 2 PHE B 247 GLU B 250 -1 O GLU B 248 N ILE B 231
LINK C CXM A 1 N LYS A 2 1555 1555 1.30
LINK C CXM B 1 N LYS B 2 1555 1555 1.33
CRYST1 125.980 125.980 67.340 90.00 90.00 120.00 P 63 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007938 0.004583 0.000000 0.00000
SCALE2 0.000000 0.009166 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014850 0.00000
HETATM 1 N CXM A 1 -21.850 20.217 -31.409 1.00 31.44 N
ANISOU 1 N CXM A 1 4357 4150 3438 -198 88 -39 N
HETATM 2 CA CXM A 1 -23.256 20.502 -31.607 1.00 25.67 C
ANISOU 2 CA CXM A 1 3639 3427 2689 -206 31 -14 C
HETATM 3 CB CXM A 1 -24.115 20.126 -30.409 1.00 30.61 C
ANISOU 3 CB CXM A 1 4235 4036 3360 -190 -6 -33 C
HETATM 4 CG CXM A 1 -24.532 18.672 -30.397 1.00 42.59 C
ANISOU 4 CG CXM A 1 5771 5559 4852 -194 -9 -77 C
HETATM 5 SD CXM A 1 -25.491 18.402 -28.881 1.00 35.87 S
ANISOU 5 SD CXM A 1 4883 4686 4060 -177 -44 -91 S
HETATM 6 CE CXM A 1 -24.386 18.659 -27.458 1.00 39.87 C
ANISOU 6 CE CXM A 1 5350 5167 4633 -146 -15 -100 C
HETATM 7 C CXM A 1 -23.265 22.010 -31.796 1.00 34.88 C
ANISOU 7 C CXM A 1 4796 4584 3873 -208 23 40 C
HETATM 8 O CXM A 1 -22.497 22.699 -31.149 1.00 31.71 O
ANISOU 8 O CXM A 1 4365 4161 3524 -200 47 46 O
HETATM 9 CN CXM A 1 -21.400 18.906 -31.736 1.00 29.85 C
ANISOU 9 CN CXM A 1 4178 3957 3207 -198 121 -83 C
HETATM 10 ON1 CXM A 1 -22.133 18.123 -32.582 1.00 30.63 O
ANISOU 10 ON1 CXM A 1 4320 4073 3243 -216 107 -99 O
HETATM 11 ON2 CXM A 1 -20.073 18.625 -31.533 1.00 32.33 O
ANISOU 11 ON2 CXM A 1 4474 4265 3545 -185 175 -105 O
HETATM 12 H CXM A 1 -21.699 20.321 -30.569 1.00 37.74 H
HETATM 13 HA CXM A 1 -23.626 19.995 -32.347 1.00 30.82 H
HETATM 14 HB2 CXM A 1 -24.914 20.676 -30.417 1.00 36.75 H
HETATM 15 HB3 CXM A 1 -23.614 20.310 -29.600 1.00 36.75 H
HETATM 16 HG2 CXM A 1 -23.747 18.101 -30.401 1.00 51.12 H
HETATM 17 HG3 CXM A 1 -25.077 18.476 -31.175 1.00 51.12 H
HETATM 18 HE1 CXM A 1 -24.878 18.510 -26.636 1.00 47.86 H
HETATM 19 HE2 CXM A 1 -24.047 19.568 -27.472 1.00 47.86 H
HETATM 20 HE3 CXM A 1 -23.644 18.036 -27.508 1.00 47.86 H