HEADER TRANSFERASE/INHIBITOR 28-AUG-20 7JXX TITLE STRUCTURE OF TTBK1 KINASE DOMAIN IN COMPLEX WITH COMPOUND 3 CAVEAT 7JXX RESIDUES ASN A 213 AND ARG A 214 THAT ARE NEXT TO EACH OTHER CAVEAT 2 7JXX IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 7JXX BETWEEN C AND N (A CONFORMER) IS 1.14. RESIDUES ASN A 213 CAVEAT 4 7JXX AND ARG A 214 THAT ARE NEXT TO EACH OTHER IN THE SAMPLE CAVEAT 5 7JXX SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE BETWEEN C AND N CAVEAT 6 7JXX (B CONFORMER) IS 1.20. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAU-TUBULIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BRAIN-DERIVED TAU KINASE; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTBK1, BDTK, KIAA1855; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS TAU TUBULIN BINDING KINASE, KINASE, TRANSFERASE, TRANSFERASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.V.CHODAPRAMBIL REVDAT 3 18-OCT-23 7JXX 1 REMARK REVDAT 2 26-MAY-21 7JXX 1 JRNL REVDAT 1 19-MAY-21 7JXX 0 JRNL AUTH T.HALKINA,J.L.HENDERSON,E.Y.LIN,M.K.HIMMELBAUER,J.H.JONES, JRNL AUTH 2 M.NEVALAINEN,J.FENG,K.KING,M.ROONEY,J.L.JOHNSON, JRNL AUTH 3 D.J.MARCOTTE,J.V.CHODAPARAMBIL,P.R.KUMAR,T.A.PATTERSON, JRNL AUTH 4 P.MURUGAN,E.SCHUMAN,L.WONG,T.HESSON,S.LAMORE,C.BAO, JRNL AUTH 5 M.CALHOUN,H.CERTO,B.AMARAL,G.M.DILLON,R.GILFILLAN, JRNL AUTH 6 F.G.DE TURISO JRNL TITL DISCOVERY OF POTENT AND BRAIN-PENETRANT TAU TUBULIN KINASE 1 JRNL TITL 2 (TTBK1) INHIBITORS THAT LOWER TAU PHOSPHORYLATION IN VIVO. JRNL REF J.MED.CHEM. V. 64 6358 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33944571 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00382 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 39519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 2059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4000 - 3.8400 0.94 2550 122 0.1542 0.1839 REMARK 3 2 3.8300 - 3.0500 0.99 2568 148 0.1498 0.1647 REMARK 3 3 3.0500 - 2.6600 0.98 2503 168 0.1805 0.2294 REMARK 3 4 2.6600 - 2.4200 0.98 2526 151 0.1745 0.2132 REMARK 3 5 2.4200 - 2.2400 0.98 2524 144 0.1756 0.2209 REMARK 3 6 2.2400 - 2.1100 0.98 2500 123 0.1744 0.1815 REMARK 3 7 2.1100 - 2.0100 0.98 2532 113 0.1790 0.2128 REMARK 3 8 2.0100 - 1.9200 0.98 2515 124 0.1909 0.2161 REMARK 3 9 1.9200 - 1.8500 0.98 2502 151 0.2086 0.2693 REMARK 3 10 1.8500 - 1.7800 0.98 2472 121 0.2300 0.2798 REMARK 3 11 1.7800 - 1.7300 0.97 2487 142 0.2387 0.2791 REMARK 3 12 1.7300 - 1.6800 0.98 2461 155 0.2494 0.3004 REMARK 3 13 1.6800 - 1.6300 0.97 2451 129 0.2733 0.3245 REMARK 3 14 1.6300 - 1.5900 0.96 2463 140 0.2894 0.3097 REMARK 3 15 1.5900 - 1.5600 0.95 2406 128 0.3088 0.3248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.204 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.853 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2551 REMARK 3 ANGLE : 1.326 3465 REMARK 3 CHIRALITY : 0.076 367 REMARK 3 PLANARITY : 0.009 449 REMARK 3 DIHEDRAL : 17.942 999 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 177.8819 5.0564 66.8954 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.2997 REMARK 3 T33: 0.5650 T12: -0.0833 REMARK 3 T13: -0.0024 T23: 0.1806 REMARK 3 L TENSOR REMARK 3 L11: 1.2431 L22: 2.3305 REMARK 3 L33: 1.5401 L12: -1.3879 REMARK 3 L13: 1.2990 L23: -1.2325 REMARK 3 S TENSOR REMARK 3 S11: 0.1482 S12: -0.6757 S13: -1.4409 REMARK 3 S21: 0.2771 S22: 0.2618 S23: 1.0143 REMARK 3 S31: 0.2148 S32: -0.6551 S33: -0.1547 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 174.4296 24.6973 37.0268 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.5841 REMARK 3 T33: 0.2673 T12: -0.1664 REMARK 3 T13: 0.0401 T23: 0.0965 REMARK 3 L TENSOR REMARK 3 L11: 3.6703 L22: 1.5550 REMARK 3 L33: 0.6208 L12: 0.1741 REMARK 3 L13: -1.2660 L23: 0.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: 0.4970 S13: 0.6846 REMARK 3 S21: -0.2373 S22: -0.0687 S23: -0.1994 REMARK 3 S31: -0.4875 S32: 0.8028 S33: -0.1707 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 185.1372 12.6522 51.3881 REMARK 3 T TENSOR REMARK 3 T11: 0.1646 T22: 0.2470 REMARK 3 T33: 0.1447 T12: 0.0073 REMARK 3 T13: 0.0280 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 4.1790 L22: 1.2987 REMARK 3 L33: 1.1207 L12: -0.3167 REMARK 3 L13: 1.8862 L23: -0.1932 REMARK 3 S TENSOR REMARK 3 S11: 0.1727 S12: 0.7779 S13: -0.3182 REMARK 3 S21: -0.2083 S22: -0.0009 S23: -0.1128 REMARK 3 S31: 0.0742 S32: 0.2218 S33: -0.0872 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 196.9345 12.3585 64.8577 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.0864 REMARK 3 T33: 0.2127 T12: 0.0131 REMARK 3 T13: -0.0283 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.2164 L22: 3.8060 REMARK 3 L33: 2.8000 L12: -0.1461 REMARK 3 L13: 1.4218 L23: 0.1882 REMARK 3 S TENSOR REMARK 3 S11: 0.0573 S12: 0.1189 S13: -0.2278 REMARK 3 S21: 0.0616 S22: 0.0857 S23: -0.1602 REMARK 3 S31: -0.0879 S32: 0.0756 S33: -0.1212 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.20000 REMARK 200 R SYM FOR SHELL (I) : 0.90000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 0.2M NA ACETATE 20% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.91850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.16850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.91850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.16850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 HIS A 13 REMARK 465 MET A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 GLN A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 44 REMARK 465 THR A 187 REMARK 465 GLY A 188 REMARK 465 ALA A 313 REMARK 465 GLY A 314 REMARK 465 THR A 315 REMARK 465 ASP A 316 REMARK 465 ALA A 317 REMARK 465 LEU A 318 REMARK 465 LEU A 319 REMARK 465 SER A 320 REMARK 465 THR A 321 REMARK 465 SER A 322 REMARK 465 THR A 323 REMARK 465 SER A 324 REMARK 465 THR A 325 REMARK 465 PRO A 326 REMARK 465 PRO A 327 REMARK 465 GLN A 328 REMARK 465 GLN A 329 REMARK 465 ASN A 330 REMARK 465 THR A 331 REMARK 465 ARG A 332 REMARK 465 GLN A 333 REMARK 465 THR A 334 REMARK 465 ALA A 335 REMARK 465 ALA A 336 REMARK 465 MET A 337 REMARK 465 PHE A 338 REMARK 465 GLY A 339 REMARK 465 VAL A 340 REMARK 465 VAL A 341 REMARK 465 ASN A 342 REMARK 465 VAL A 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 PHE A 45 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 ARG A 200 CD NE CZ NH1 NH2 REMARK 470 LYS A 212 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 513 O HOH A 704 1.71 REMARK 500 O HOH A 689 O HOH A 770 1.89 REMARK 500 O HOH A 523 O HOH A 715 1.93 REMARK 500 OD1 ASP A 32 O HOH A 501 1.94 REMARK 500 O HOH A 763 O HOH A 790 1.95 REMARK 500 O LYS A 83 O HOH A 502 1.98 REMARK 500 O HOH A 678 O HOH A 729 2.00 REMARK 500 O HOH A 760 O HOH A 786 2.00 REMARK 500 NZ LYS A 312 O HOH A 503 2.02 REMARK 500 O HOH A 631 O HOH A 752 2.02 REMARK 500 O HOH A 537 O HOH A 720 2.02 REMARK 500 OH TYR A 104 O HOH A 504 2.03 REMARK 500 O HOH A 569 O HOH A 727 2.03 REMARK 500 O HOH A 516 O HOH A 727 2.05 REMARK 500 O HOH A 640 O HOH A 705 2.09 REMARK 500 O HOH A 666 O HOH A 787 2.10 REMARK 500 NE2 GLN A 247 O HOH A 505 2.13 REMARK 500 NE ARG A 92 O HOH A 506 2.13 REMARK 500 O HOH A 653 O HOH A 689 2.14 REMARK 500 O HOH A 645 O HOH A 750 2.14 REMARK 500 OE1 GLU A 267 O HOH A 507 2.14 REMARK 500 O HOH A 529 O HOH A 750 2.17 REMARK 500 O HOH A 702 O HOH A 739 2.18 REMARK 500 OD2 ASP A 154 O HOH A 508 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NA NA A 402 NA NA A 403 2757 1.55 REMARK 500 NH1 ARG A 240 OD2 ASP A 285 1565 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 213 C ARG A 214 N -0.195 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 69 C - N - CA ANGL. DEV. = -20.3 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 18.64 58.03 REMARK 500 ARG A 33 -37.35 -134.72 REMARK 500 ARG A 153 -0.29 70.95 REMARK 500 ASP A 176 77.70 63.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 110 OE1 REMARK 620 2 THR A 168 OG1 127.9 REMARK 620 3 HOH A 581 O 96.8 133.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 624 O REMARK 620 2 HOH A 636 O 137.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 624 O REMARK 620 2 HOH A 748 O 129.9 REMARK 620 N 1 DBREF 7JXX A 15 343 UNP Q5TCY1 TTBK1_HUMAN 15 343 SEQADV 7JXX GLY A 12 UNP Q5TCY1 EXPRESSION TAG SEQADV 7JXX HIS A 13 UNP Q5TCY1 EXPRESSION TAG SEQADV 7JXX MET A 14 UNP Q5TCY1 EXPRESSION TAG SEQRES 1 A 332 GLY HIS MET SER GLY GLY GLY GLU GLN ALA ASP ILE LEU SEQRES 2 A 332 PRO ALA ASN TYR VAL VAL LYS ASP ARG TRP LYS VAL LEU SEQRES 3 A 332 LYS LYS ILE GLY GLY GLY GLY PHE GLY GLU ILE TYR GLU SEQRES 4 A 332 ALA MET ASP LEU LEU THR ARG GLU ASN VAL ALA LEU LYS SEQRES 5 A 332 VAL GLU SER ALA GLN GLN PRO LYS GLN VAL LEU LYS MET SEQRES 6 A 332 GLU VAL ALA VAL LEU LYS LYS LEU GLN GLY LYS ASP HIS SEQRES 7 A 332 VAL CYS ARG PHE ILE GLY CYS GLY ARG ASN GLU LYS PHE SEQRES 8 A 332 ASN TYR VAL VAL MET GLN LEU GLN GLY ARG ASN LEU ALA SEQRES 9 A 332 ASP LEU ARG ARG SER GLN PRO ARG GLY THR PHE THR LEU SEQRES 10 A 332 SER THR THR LEU ARG LEU GLY LYS GLN ILE LEU GLU SER SEQRES 11 A 332 ILE GLU ALA ILE HIS SER VAL GLY PHE LEU HIS ARG ASP SEQRES 12 A 332 ILE LYS PRO SER ASN PHE ALA MET GLY ARG LEU PRO SER SEQRES 13 A 332 THR TYR ARG LYS CYS TYR MET LEU ASP PHE GLY LEU ALA SEQRES 14 A 332 ARG GLN TYR THR ASN THR THR GLY ASP VAL ARG PRO PRO SEQRES 15 A 332 ARG ASN VAL ALA GLY PHE ARG GLY THR VAL ARG TYR ALA SEQRES 16 A 332 SER VAL ASN ALA HIS LYS ASN ARG GLU MET GLY ARG HIS SEQRES 17 A 332 ASP ASP LEU TRP SER LEU PHE TYR MET LEU VAL GLU PHE SEQRES 18 A 332 ALA VAL GLY GLN LEU PRO TRP ARG LYS ILE LYS ASP LYS SEQRES 19 A 332 GLU GLN VAL GLY MET ILE LYS GLU LYS TYR GLU HIS ARG SEQRES 20 A 332 MET LEU LEU LYS HIS MET PRO SER GLU PHE HIS LEU PHE SEQRES 21 A 332 LEU ASP HIS ILE ALA SER LEU ASP TYR PHE THR LYS PRO SEQRES 22 A 332 ASP TYR GLN LEU ILE MET SER VAL PHE GLU ASN SER MET SEQRES 23 A 332 LYS GLU ARG GLY ILE ALA GLU ASN GLU ALA PHE ASP TRP SEQRES 24 A 332 GLU LYS ALA GLY THR ASP ALA LEU LEU SER THR SER THR SEQRES 25 A 332 SER THR PRO PRO GLN GLN ASN THR ARG GLN THR ALA ALA SEQRES 26 A 332 MET PHE GLY VAL VAL ASN VAL HET VP7 A 401 25 HET NA A 402 1 HET NA A 403 1 HET NA A 404 1 HETNAM VP7 4-(2-AMINO-5,6,7,8-TETRAHYDROPYRIMIDO[4',5':3, HETNAM 2 VP7 4]CYCLOHEPTA[1,2-B]INDOL-11-YL)-2-METHYLBUT-3-YN-2-OL HETNAM NA SODIUM ION FORMUL 2 VP7 C20 H20 N4 O FORMUL 3 NA 3(NA 1+) FORMUL 6 HOH *291(H2 O) HELIX 1 AA1 VAL A 73 LEU A 84 1 12 HELIX 2 AA2 ASN A 113 GLN A 121 1 9 HELIX 3 AA3 THR A 127 VAL A 148 1 22 HELIX 4 AA4 LYS A 156 SER A 158 5 3 HELIX 5 AA5 THR A 202 ALA A 206 5 5 HELIX 6 AA6 SER A 207 LYS A 212 1 6 HELIX 7 AA7 GLY A 217 GLY A 235 1 19 HELIX 8 AA8 ASP A 244 TYR A 255 1 12 HELIX 9 AA9 GLU A 256 LYS A 262 5 7 HELIX 10 AB1 GLU A 267 LEU A 278 1 12 HELIX 11 AB2 ASP A 285 ARG A 300 1 16 SHEET 1 AA1 6 VAL A 29 VAL A 30 0 SHEET 2 AA1 6 TRP A 34 GLY A 42 -1 O TRP A 34 N VAL A 30 SHEET 3 AA1 6 GLU A 47 ASP A 53 -1 O ILE A 48 N ILE A 40 SHEET 4 AA1 6 ASN A 59 SER A 66 -1 O LEU A 62 N TYR A 49 SHEET 5 AA1 6 PHE A 102 GLN A 108 -1 O ASN A 103 N GLU A 65 SHEET 6 AA1 6 PHE A 93 ARG A 98 -1 N GLY A 95 O VAL A 106 SHEET 1 AA2 2 PHE A 150 LEU A 151 0 SHEET 2 AA2 2 ARG A 181 GLN A 182 -1 O ARG A 181 N LEU A 151 SHEET 1 AA3 2 PHE A 160 MET A 162 0 SHEET 2 AA3 2 CYS A 172 MET A 174 -1 O TYR A 173 N ALA A 161 LINK OE1 GLN A 110 NA NA A 404 1555 1555 2.72 LINK OG1 THR A 168 NA NA A 404 1555 1555 2.72 LINK NA NA A 402 O HOH A 624 1555 2757 3.06 LINK NA NA A 402 O HOH A 636 1555 1555 2.93 LINK NA NA A 403 O HOH A 624 1555 1555 3.02 LINK NA NA A 403 O HOH A 748 1555 2757 2.24 LINK NA NA A 404 O HOH A 581 1555 1555 2.81 CRYST1 173.837 34.337 48.666 90.00 103.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005753 0.000000 0.001381 0.00000 SCALE2 0.000000 0.029123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021132 0.00000