HEADER TRANSCRIPTION 30-AUG-20 7JYE TITLE HUMAN LIVER RECEPTOR HOMOLOG-1 IN COMPLEX WITH 9CHOP AND A FRAGMENT OF TITLE 2 TIF2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEAR RECEPTOR LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ALPHA-1-FETOPROTEIN TRANSCRIPTION FACTOR,B1-BINDING FACTOR, COMPND 6 HB1F,CYP7A PROMOTER-BINDING FACTOR,HEPATOCYTIC TRANSCRIPTION FACTOR, COMPND 7 LIVER RECEPTOR HOMOLOG 1,LRH-1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: RESIDUES 740-751; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR5A2, B1F, CPF, FTF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS AGONIST, NUCLEAR RECEPTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.H.D'AGOSTINO,S.G.MAYS,E.A.ORTLUND REVDAT 2 18-OCT-23 7JYE 1 REMARK REVDAT 1 02-MAR-22 7JYE 0 JRNL AUTH E.H.D'AGOSTINO,S.G.MAYS,A.F.FLYNN,X.HUANG,G.WANG,X.LIU, JRNL AUTH 2 E.J.MILLINGS,C.D.OKAFOR,A.PATEL,M.L.CATO,J.C.CORNELISON, JRNL AUTH 3 R.HOUTMAN,D.D.MOORE,J.W.CALVERT,N.T.JUI,E.A.ORTLUND JRNL TITL TAPPING INTO A PHOSPHOLIPID-LRH-1 AXIS YIELDS A POWERFUL JRNL TITL 2 ANTI-INFLAMMATORY AGENT WITH IN VIVO ACTIVITY AGAINST JRNL TITL 3 COLITIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 105.30 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5120 - 4.6350 0.95 2717 145 0.1580 0.1687 REMARK 3 2 4.6350 - 3.6801 0.95 2607 134 0.1540 0.1825 REMARK 3 3 3.6801 - 3.2153 0.95 2581 138 0.1822 0.2099 REMARK 3 4 3.2153 - 2.9215 0.95 2568 133 0.2108 0.2668 REMARK 3 5 2.9215 - 2.7121 0.95 2563 137 0.2196 0.2523 REMARK 3 6 2.7121 - 2.5523 0.95 2558 131 0.2592 0.2783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4800 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 2144 REMARK 3 ANGLE : 0.320 2897 REMARK 3 CHIRALITY : 0.030 323 REMARK 3 PLANARITY : 0.001 366 REMARK 3 DIHEDRAL : 3.054 1796 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8175 52.4887 2.8625 REMARK 3 T TENSOR REMARK 3 T11: 0.5023 T22: 0.5582 REMARK 3 T33: 0.4261 T12: 0.0067 REMARK 3 T13: 0.0375 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 6.8026 L22: 6.6742 REMARK 3 L33: 6.7809 L12: 5.3774 REMARK 3 L13: 6.0120 L23: 5.2863 REMARK 3 S TENSOR REMARK 3 S11: -0.3010 S12: 0.0781 S13: -0.1023 REMARK 3 S21: -0.1389 S22: 0.4011 S23: -0.5567 REMARK 3 S31: -0.8703 S32: 0.2439 S33: -0.2943 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5694 49.7250 14.6863 REMARK 3 T TENSOR REMARK 3 T11: 0.5365 T22: 0.4598 REMARK 3 T33: 0.3763 T12: -0.0909 REMARK 3 T13: -0.0571 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.2789 L22: 3.7350 REMARK 3 L33: 3.1266 L12: -0.7638 REMARK 3 L13: -1.8875 L23: 0.0938 REMARK 3 S TENSOR REMARK 3 S11: 0.6377 S12: -0.0267 S13: 1.0834 REMARK 3 S21: 0.0007 S22: -0.4304 S23: -0.7209 REMARK 3 S31: -0.0570 S32: 0.4040 S33: -0.0220 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6768 41.7456 9.1456 REMARK 3 T TENSOR REMARK 3 T11: 0.4167 T22: 0.5261 REMARK 3 T33: 0.1905 T12: -0.0432 REMARK 3 T13: -0.0536 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.8101 L22: 3.2445 REMARK 3 L33: 3.4535 L12: -2.9055 REMARK 3 L13: -0.0475 L23: 0.7878 REMARK 3 S TENSOR REMARK 3 S11: -0.2889 S12: 0.0621 S13: 0.0367 REMARK 3 S21: 0.1534 S22: -0.0150 S23: 0.0258 REMARK 3 S31: -0.0887 S32: -0.2123 S33: 0.1460 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1361 42.9820 3.3966 REMARK 3 T TENSOR REMARK 3 T11: 0.5230 T22: 0.9050 REMARK 3 T33: 0.4743 T12: -0.1901 REMARK 3 T13: -0.1130 T23: 0.1252 REMARK 3 L TENSOR REMARK 3 L11: 5.4448 L22: 5.7227 REMARK 3 L33: 5.6958 L12: -5.5298 REMARK 3 L13: -5.3888 L23: 5.6893 REMARK 3 S TENSOR REMARK 3 S11: 0.5875 S12: 0.5555 S13: -0.0224 REMARK 3 S21: -0.6257 S22: -0.0034 S23: -0.5647 REMARK 3 S31: -0.5847 S32: 0.4081 S33: -0.4998 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 410 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.8504 36.0586 1.1893 REMARK 3 T TENSOR REMARK 3 T11: 0.3770 T22: 0.4742 REMARK 3 T33: 0.1900 T12: -0.0220 REMARK 3 T13: 0.0304 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.8629 L22: 1.4269 REMARK 3 L33: 4.1812 L12: -0.8991 REMARK 3 L13: 2.3876 L23: -0.3542 REMARK 3 S TENSOR REMARK 3 S11: 0.1279 S12: 0.5839 S13: -0.1190 REMARK 3 S21: -0.1206 S22: -0.1266 S23: -0.0140 REMARK 3 S31: 0.0782 S32: 0.4358 S33: -0.0014 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 495 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9802 32.1082 11.4586 REMARK 3 T TENSOR REMARK 3 T11: 0.3682 T22: 0.3972 REMARK 3 T33: 0.2124 T12: -0.0404 REMARK 3 T13: 0.0076 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 7.3561 L22: 2.5721 REMARK 3 L33: 3.3829 L12: 0.3918 REMARK 3 L13: 5.0098 L23: -0.1712 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: -0.1739 S13: -0.4920 REMARK 3 S21: 0.2971 S22: 0.1693 S23: -0.1307 REMARK 3 S31: 0.1418 S32: -0.0627 S33: -0.0919 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 540 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.9066 43.0213 24.6514 REMARK 3 T TENSOR REMARK 3 T11: 0.9833 T22: 0.8569 REMARK 3 T33: 0.5701 T12: 0.1335 REMARK 3 T13: -0.1788 T23: -0.1862 REMARK 3 L TENSOR REMARK 3 L11: 4.0800 L22: 7.3463 REMARK 3 L33: 9.2544 L12: -4.4231 REMARK 3 L13: 5.5551 L23: -4.3403 REMARK 3 S TENSOR REMARK 3 S11: -0.8866 S12: -1.7399 S13: 1.1279 REMARK 3 S21: 1.6094 S22: 0.2032 S23: 0.0398 REMARK 3 S31: -1.4678 S32: -0.7602 S33: 0.6534 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 742 THROUGH 751 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.2736 52.7928 20.1272 REMARK 3 T TENSOR REMARK 3 T11: 1.0896 T22: 0.9546 REMARK 3 T33: 0.6088 T12: 0.1962 REMARK 3 T13: -0.1324 T23: -0.2927 REMARK 3 L TENSOR REMARK 3 L11: 9.6165 L22: 4.9858 REMARK 3 L33: 9.2631 L12: 4.5267 REMARK 3 L13: -5.5330 L23: -6.1033 REMARK 3 S TENSOR REMARK 3 S11: 0.1662 S12: -0.8087 S13: 1.2465 REMARK 3 S21: 3.0255 S22: -0.8005 S23: 0.0521 REMARK 3 S31: -3.0074 S32: -1.4027 S33: 0.3492 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.26500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 1.95500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7JYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9-19% TERT-BUTANOL, 0-6 % GLYCEROL, REMARK 280 0.1 M TRI-SODIUM CITRATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.02467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.51233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.51233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.02467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 296 REMARK 465 ASN A 297 REMARK 465 ALA A 298 REMARK 465 ALA A 541 REMARK 465 LYS C 740 REMARK 465 GLU C 741 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 507 OG SER A 510 2.14 REMARK 500 OG SER A 334 OE1 GLU A 337 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 396 -70.42 -80.37 REMARK 500 ASN A 463 38.09 76.06 REMARK 500 ASN A 466 64.44 -119.23 REMARK 500 ASN A 530 -123.14 59.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VQY A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7JYD RELATED DB: PDB REMARK 900 LRH-1 IN COMPLEX WITH AGONIST 10CA AND A FRAGMENT OF COREGULATOR REMARK 900 TIF2 DBREF 7JYE A 299 541 UNP O00482 NR5A2_HUMAN 299 541 DBREF 7JYE C 740 751 UNP Q15596 NCOA2_HUMAN 740 751 SEQADV 7JYE SER A 296 UNP O00482 EXPRESSION TAG SEQADV 7JYE ASN A 297 UNP O00482 EXPRESSION TAG SEQADV 7JYE ALA A 298 UNP O00482 EXPRESSION TAG SEQRES 1 A 246 SER ASN ALA ALA SER ILE PRO HIS LEU ILE LEU GLU LEU SEQRES 2 A 246 LEU LYS CYS GLU PRO ASP GLU PRO GLN VAL GLN ALA LYS SEQRES 3 A 246 ILE MET ALA TYR LEU GLN GLN GLU GLN ALA ASN ARG SER SEQRES 4 A 246 LYS HIS GLU LYS LEU SER THR PHE GLY LEU MET CYS LYS SEQRES 5 A 246 MET ALA ASP GLN THR LEU PHE SER ILE VAL GLU TRP ALA SEQRES 6 A 246 ARG SER SER ILE PHE PHE ARG GLU LEU LYS VAL ASP ASP SEQRES 7 A 246 GLN MET LYS LEU LEU GLN ASN CYS TRP SER GLU LEU LEU SEQRES 8 A 246 ILE LEU ASP HIS ILE TYR ARG GLN VAL VAL HIS GLY LYS SEQRES 9 A 246 GLU GLY SER ILE PHE LEU VAL THR GLY GLN GLN VAL ASP SEQRES 10 A 246 TYR SER ILE ILE ALA SER GLN ALA GLY ALA THR LEU ASN SEQRES 11 A 246 ASN LEU MET SER HIS ALA GLN GLU LEU VAL ALA LYS LEU SEQRES 12 A 246 ARG SER LEU GLN PHE ASP GLN ARG GLU PHE VAL CYS LEU SEQRES 13 A 246 LYS PHE LEU VAL LEU PHE SER LEU ASP VAL LYS ASN LEU SEQRES 14 A 246 GLU ASN PHE GLN LEU VAL GLU GLY VAL GLN GLU GLN VAL SEQRES 15 A 246 ASN ALA ALA LEU LEU ASP TYR THR MET CYS ASN TYR PRO SEQRES 16 A 246 GLN GLN THR GLU LYS PHE GLY GLN LEU LEU LEU ARG LEU SEQRES 17 A 246 PRO GLU ILE ARG ALA ILE SER MET GLN ALA GLU GLU TYR SEQRES 18 A 246 LEU TYR TYR LYS HIS LEU ASN GLY ASP VAL PRO TYR ASN SEQRES 19 A 246 ASN LEU LEU ILE GLU MET LEU HIS ALA LYS ARG ALA SEQRES 1 C 12 LYS GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS HET VQY A 601 95 HETNAM VQY 9-[(3~{A}~{R},6~{R},6~{A}~{R})-6-OXIDANYL-3-PHENYL- HETNAM 2 VQY 3~{A}-(1-PHENYLETHENYL)-4,5,6,6~{A}-TETRAHYDRO-1~{H}- HETNAM 3 VQY PENTALEN-2-YL]NONYL 2-(TRIMETHYL-$L^{4}-AZANYL)ETHYL HETNAM 4 VQY HYDROGEN PHOSPHATE FORMUL 3 VQY C36 H53 N O5 P 1+ FORMUL 4 HOH *18(H2 O) HELIX 1 AA1 PRO A 302 LYS A 310 1 9 HELIX 2 AA2 ASP A 314 ASN A 332 1 19 HELIX 3 AA3 SER A 340 SER A 363 1 24 HELIX 4 AA4 SER A 363 GLU A 368 1 6 HELIX 5 AA5 LYS A 370 GLY A 398 1 29 HELIX 6 AA6 TYR A 413 SER A 418 1 6 HELIX 7 AA7 GLY A 421 LEU A 441 1 21 HELIX 8 AA8 ASP A 444 PHE A 457 1 14 HELIX 9 AA9 ASN A 466 TYR A 489 1 24 HELIX 10 AB1 GLU A 494 ASN A 523 1 30 HELIX 11 AB2 ASN A 530 ALA A 538 1 9 HELIX 12 AB3 ALA C 743 ASP C 750 1 8 SHEET 1 AA1 2 SER A 402 PHE A 404 0 SHEET 2 AA1 2 GLN A 410 ASP A 412 -1 O VAL A 411 N ILE A 403 SITE 1 AC1 9 PHE A 342 HIS A 390 ILE A 416 GLY A 421 SITE 2 AC1 9 LEU A 424 GLU A 465 TYR A 516 LYS A 520 SITE 3 AC1 9 HOH A 707 CRYST1 89.240 89.240 106.537 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011206 0.006470 0.000000 0.00000 SCALE2 0.000000 0.012939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009386 0.00000