HEADER SIGNALING PROTEIN 01-SEP-20 7JYZ TITLE SOLUTION NMR STRUCTURE AND DYNAMICS OF HUMAN BRD3 ET IN COMPLEX WITH TITLE 2 MLV IN CTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: RING3-LIKE PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOLONEY MURINE LEUKEMIA VIRUS; SOURCE 3 ORGANISM_COMMON: MOMLV; SOURCE 4 ORGANISM_TAXID: 11801; SOURCE 5 GENE: GAG-PRO-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BRD3, KIAA0043, RING3L; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INTEGRASE, BRD3 ET, MLV IN CTD, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.AIYER,G.LIU,G.V.T.SWAPNA,J.HAO,L.C.MA,M.J.ROTH,G.T.MONTELIONE REVDAT 4 15-MAY-24 7JYZ 1 REMARK REVDAT 3 14-JUN-23 7JYZ 1 DBREF REVDAT 2 18-AUG-21 7JYZ 1 JRNL REVDAT 1 23-JUN-21 7JYZ 0 JRNL AUTH S.AIYER,G.V.T.SWAPNA,L.C.MA,G.LIU,J.HAO,G.CHALMERS, JRNL AUTH 2 B.C.JACOBS,G.T.MONTELIONE,M.J.ROTH JRNL TITL A COMMON BINDING MOTIF IN THE ET DOMAIN OF BRD3 FORMS JRNL TITL 2 POLYMORPHIC STRUCTURAL INTERFACES WITH HOST AND VIRAL JRNL TITL 3 PROTEINS. JRNL REF STRUCTURE V. 29 886 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33592170 JRNL DOI 10.1016/J.STR.2021.01.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251588. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.0; 7.2 REMARK 210 IONIC STRENGTH : 100 MM NACL; 100 MM NACL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.25 MM [U-100% 13C; U-100% 15N] REMARK 210 BRD3 ET, 0.25 MM [U-100% 13C; U- REMARK 210 100% 15N] MLV-IN-CTD, 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM 2-MERCAPTOETHANOL, REMARK 210 90% H2O/10% D2O; 0.25 MM [U-15N] REMARK 210 BRD3 ET, 0.25 MM [U-15N] MLV-IN- REMARK 210 CTD, 20 MM SODIUM PHOSPHATE, 100 REMARK 210 MM SODIUM CHLORIDE, 2 MM 2- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-15N HSQC-TROSY; 3D HNCO; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HNHA; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 3D 13C-15N_SIMNOESY; 3D REMARK 210 13C-NOESY-AROMATIC; 2D 15N-T1- REMARK 210 RELAXATION; 2D 15N-T2-RELAXATION; REMARK 210 2D HNOE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.3B, 3.2, NMRPIPE, REMARK 210 SPARKY, AUTOASSIGN 2.4, I-PINE, REMARK 210 ASDP 2.3, CYANA 3.98.13 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 20 -152.87 -174.61 REMARK 500 1 PRO A 26 96.63 -62.38 REMARK 500 1 PRO A 65 99.88 -62.61 REMARK 500 1 ARG A 68 116.99 -174.28 REMARK 500 1 GLN A 77 91.26 -68.25 REMARK 500 1 LEU A 80 13.59 -142.89 REMARK 500 1 SER B 207 113.53 -166.58 REMARK 500 1 SER B 216 -156.61 -145.07 REMARK 500 1 PRO B 244 -168.69 -66.27 REMARK 500 1 SER B 261 -62.79 -150.99 REMARK 500 1 ASN B 266 83.65 60.07 REMARK 500 1 GLN B 294 13.06 52.93 REMARK 500 2 ARG A 18 106.35 -58.96 REMARK 500 2 HIS A 19 99.54 -50.18 REMARK 500 2 GLN A 20 85.57 -170.26 REMARK 500 2 LYS A 22 -49.26 -162.63 REMARK 500 2 PRO A 39 -8.77 -59.05 REMARK 500 2 PRO A 65 96.58 -67.43 REMARK 500 2 ASP B 218 -72.63 -74.04 REMARK 500 2 PRO B 244 -137.83 -74.17 REMARK 500 2 GLU B 259 105.35 -166.79 REMARK 500 2 SER B 261 -70.43 -116.31 REMARK 500 2 ASN B 266 77.17 56.46 REMARK 500 2 GLN B 294 29.59 48.30 REMARK 500 3 ARG A 18 98.44 -65.38 REMARK 500 3 THR A 40 -30.74 -145.84 REMARK 500 3 LEU A 80 4.44 -154.68 REMARK 500 3 HIS B 203 107.94 -173.95 REMARK 500 3 SER B 207 119.83 -167.19 REMARK 500 3 HIS B 208 94.96 -164.18 REMARK 500 3 ALA B 213 70.67 -162.54 REMARK 500 3 GLU B 221 101.18 69.76 REMARK 500 3 PRO B 244 -162.27 -58.89 REMARK 500 3 GLU B 259 107.02 -161.59 REMARK 500 3 PRO B 260 78.13 -67.24 REMARK 500 3 SER B 265 85.12 -154.49 REMARK 500 3 ASN B 266 98.93 60.95 REMARK 500 3 GLN B 294 -3.59 66.17 REMARK 500 4 HIS A 19 71.59 70.64 REMARK 500 4 GLN A 20 89.90 -69.11 REMARK 500 4 THR A 21 -0.85 83.45 REMARK 500 4 SER A 66 73.83 -160.05 REMARK 500 4 GLN A 77 81.66 -68.30 REMARK 500 4 LEU A 80 10.19 -141.44 REMARK 500 4 HIS B 204 110.74 -163.60 REMARK 500 4 HIS B 205 108.24 -168.84 REMARK 500 4 HIS B 208 72.82 -154.83 REMARK 500 4 GLN B 212 89.96 -165.00 REMARK 500 4 GLU B 221 80.16 53.09 REMARK 500 4 PRO B 244 -91.61 -73.95 REMARK 500 REMARK 500 THIS ENTRY HAS 259 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30791 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE AND DYNAMICS OF HUMAN BRD3 ET IN COMPLEX REMARK 900 WITH MLV IN CTD DBREF 7JYZ A 10 89 UNP Q8UN00 Q8UN00_MLVMO 1659 1738 DBREF 7JYZ B 210 296 UNP Q15059 BRD3_HUMAN 554 640 SEQADV 7JYZ HIS A 1 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ HIS A 2 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ HIS A 3 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ HIS A 4 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ HIS A 5 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ HIS A 6 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ SER A 7 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ HIS A 8 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ MET A 9 UNP Q8UN00 EXPRESSION TAG SEQADV 7JYZ HIS B 201 UNP Q15059 EXPRESSION TAG SEQADV 7JYZ HIS B 202 UNP Q15059 EXPRESSION TAG SEQADV 7JYZ HIS B 203 UNP Q15059 EXPRESSION TAG SEQADV 7JYZ HIS B 204 UNP Q15059 EXPRESSION TAG SEQADV 7JYZ HIS B 205 UNP Q15059 EXPRESSION TAG SEQADV 7JYZ HIS B 206 UNP Q15059 EXPRESSION TAG SEQADV 7JYZ SER B 207 UNP Q15059 EXPRESSION TAG SEQADV 7JYZ HIS B 208 UNP Q15059 EXPRESSION TAG SEQADV 7JYZ MET B 209 UNP Q15059 EXPRESSION TAG SEQRES 1 A 89 HIS HIS HIS HIS HIS HIS SER HIS MET VAL GLY ASP THR SEQRES 2 A 89 VAL TRP VAL ARG ARG HIS GLN THR LYS ASN LEU GLU PRO SEQRES 3 A 89 ARG TRP LYS GLY PRO TYR THR VAL LEU LEU THR THR PRO SEQRES 4 A 89 THR ALA LEU LYS VAL ASP GLY ILE ALA ALA TRP ILE HIS SEQRES 5 A 89 ALA ALA HIS VAL LYS ALA ALA ASP PRO GLY GLY GLY PRO SEQRES 6 A 89 SER SER ARG LEU THR TRP ARG VAL GLN ARG SER GLN ASN SEQRES 7 A 89 PRO LEU LYS ILE ARG LEU THR ARG GLU ALA PRO SEQRES 1 B 96 HIS HIS HIS HIS HIS HIS SER HIS MET GLY LYS GLN ALA SEQRES 2 B 96 SER ALA SER TYR ASP SER GLU GLU GLU GLU GLU GLY LEU SEQRES 3 B 96 PRO MET SER TYR ASP GLU LYS ARG GLN LEU SER LEU ASP SEQRES 4 B 96 ILE ASN ARG LEU PRO GLY GLU LYS LEU GLY ARG VAL VAL SEQRES 5 B 96 HIS ILE ILE GLN SER ARG GLU PRO SER LEU ARG ASP SER SEQRES 6 B 96 ASN PRO ASP GLU ILE GLU ILE ASP PHE GLU THR LEU LYS SEQRES 7 B 96 PRO THR THR LEU ARG GLU LEU GLU ARG TYR VAL LYS SER SEQRES 8 B 96 CYS LEU GLN LYS LYS HELIX 1 AA1 SER B 229 ARG B 242 1 14 HELIX 2 AA2 PRO B 244 GLU B 259 1 16 HELIX 3 AA3 LYS B 278 GLN B 294 1 17 SHEET 1 AA1 5 TRP A 50 HIS A 52 0 SHEET 2 AA1 5 ALA A 41 VAL A 44 -1 N LEU A 42 O ILE A 51 SHEET 3 AA1 5 TRP A 28 THR A 38 -1 N THR A 38 O ALA A 41 SHEET 4 AA1 5 THR A 13 ARG A 17 -1 N VAL A 14 O TYR A 32 SHEET 5 AA1 5 VAL A 56 ALA A 58 -1 O LYS A 57 N TRP A 15 SHEET 1 AA2 3 THR A 70 GLN A 74 0 SHEET 2 AA2 3 ILE A 82 GLU A 87 -1 O GLU A 87 N THR A 70 SHEET 3 AA2 3 GLU B 269 ILE B 272 -1 O ILE B 270 N LEU A 84 CISPEP 1 GLY A 30 PRO A 31 1 -3.19 CISPEP 2 GLY A 30 PRO A 31 2 -0.56 CISPEP 3 GLY A 30 PRO A 31 3 -3.63 CISPEP 4 GLY A 30 PRO A 31 4 -4.05 CISPEP 5 GLY A 30 PRO A 31 5 -0.76 CISPEP 6 GLY A 30 PRO A 31 6 1.28 CISPEP 7 GLY A 30 PRO A 31 7 0.74 CISPEP 8 GLY A 30 PRO A 31 8 -4.81 CISPEP 9 GLY A 30 PRO A 31 9 -4.72 CISPEP 10 GLY A 30 PRO A 31 10 -2.68 CISPEP 11 GLY A 30 PRO A 31 11 -1.08 CISPEP 12 GLY A 30 PRO A 31 12 1.29 CISPEP 13 GLY A 30 PRO A 31 13 -2.11 CISPEP 14 GLY A 30 PRO A 31 14 -2.81 CISPEP 15 GLY A 30 PRO A 31 15 -7.85 CISPEP 16 GLY A 30 PRO A 31 16 -2.51 CISPEP 17 GLY A 30 PRO A 31 17 -1.14 CISPEP 18 GLY A 30 PRO A 31 18 2.96 CISPEP 19 GLY A 30 PRO A 31 19 -1.52 CISPEP 20 GLY A 30 PRO A 31 20 -3.57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1