HEADER LYASE 02-SEP-20 7JZC TITLE DIHYDRODIPICOLINATE SYNTHASE S48W MUTANT WITH LYSINE IN THE ALLOSTERIC TITLE 2 SITE, AND PYRUVATE IN THE CATALYTIC SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HTPA SYNTHASE; COMPND 5 EC: 4.3.3.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DAPA, A6V01_06140, A8C65_04230, ACU57_04510, AM464_03890, SOURCE 5 AML07_10805, APZ14_05880, AUQ13_12840, AUS26_08890, AW106_01920, SOURCE 6 BANRA_01022, BANRA_04600, BMA87_04055, BUE81_00170, BVCMS2454_00575, SOURCE 7 BVCMSKSP026_00126, BVCMSSINP011_00590, BW690_08395, BZL31_19835, SOURCE 8 C5N07_10510, C9306_12515, C9Z39_22035, C9Z89_01665, CG692_24655, SOURCE 9 CI693_08805, CIG45_08195, COD30_00655, D2185_06295, D3821_11825, SOURCE 10 D4638_04510, D4718_03620, D5H35_00590, D6004_00600, D9610_05430, SOURCE 11 D9D44_02140, D9I18_08280, D9J52_02245, D9S45_15015, DAH30_02905, SOURCE 12 DAH32_09095, DIV22_31750, DJ503_11770, DL326_03925, DL530_01595, SOURCE 13 DL800_18800, DLW60_01905, DMY83_09445, DNW42_05980, DQF71_00895, SOURCE 14 DS143_00895, DT034_06790, DTL43_01515, DVB38_05855, E2119_05140, SOURCE 15 E2134_09475, E2135_00560, E2855_03226, E2863_03133, E5P22_02280, SOURCE 16 E5S42_08940, EAI42_12285, EAI52_02575, EAM59_02025, EAN70_00660, SOURCE 17 EBM08_03910, EC3234A_44C00840, EC95NR1_01697, ECTO6_01408, SOURCE 18 ED307_17520, ED600_00625, EEP23_23010, EG599_00615, EH412_01980, SOURCE 19 EHJ36_02055, EI028_07440, EIZ93_19645, EKI52_22350, EL75_1173, SOURCE 20 EL79_1184, EL80_1189, EPT01_15155, ERS150876_00779, EYD11_06580, SOURCE 21 F1E19_01790, F7F00_00605, F7F23_09350, F7F26_01975, FQR64_06700, SOURCE 22 GHR40_11105, GKF74_08320, GKF86_10525, GKF89_17025, GP666_02180, SOURCE 23 GP935_11985, GQA06_13610, GQE30_13075, GQE34_24640, GQE51_05930, SOURCE 24 GRW80_06100, NCTC10963_01382, NCTC11126_06127, NCTC11341_00817, SOURCE 25 NCTC13216_00544, NCTC8960_04113, NCTC9045_01668, NCTC9062_01738, SOURCE 26 NCTC9962_06536, RK56_024520, SAMEA3472047_03904, SAMEA3484427_00338, SOURCE 27 SAMEA3484429_00447, SAMEA3752559_00798, SAMEA3753300_00971, SOURCE 28 SK85_02727; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DHDPS, ENZYME, ALLOSTERY, LYSINE BIOSYNTHESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BOARD,R.C.J.DOBSON REVDAT 3 29-NOV-23 7JZC 1 REMARK REVDAT 2 18-OCT-23 7JZC 1 REMARK REVDAT 1 22-SEP-21 7JZC 0 JRNL AUTH A.J.BOARD,R.C.J.DOBSON JRNL TITL MAPPING THE UNCHARTED WATER CHANNEL OF DHDPS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4021 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4419 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4274 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6034 ; 2.010 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9785 ; 0.951 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 6.477 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;33.940 ;23.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;15.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.376 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 736 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5060 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 959 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7JZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 294.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 33.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLUCOPYRANOSIDE, POTASSIUM PHOSPHATE REMARK 280 DIBASIC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.09033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.18067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.18067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.09033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 259.63233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CB CG SD CE REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 25 CE NZ REMARK 470 LYS A 26 CE NZ REMARK 470 MET A 61 CE REMARK 470 GLU A 84 CD OE1 OE2 REMARK 470 LEU A 88 CD1 REMARK 470 ASP A 94 OD1 OD2 REMARK 470 LYS A 120 NZ REMARK 470 GLU A 146 CD OE1 OE2 REMARK 470 LYS A 153 CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLU A 175 CD OE1 OE2 REMARK 470 ASP A 179 CG OD1 OD2 REMARK 470 ARG A 212 CD NE CZ NH1 NH2 REMARK 470 GLN A 216 CG CD OE1 NE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLN A 234 CD OE1 NE2 REMARK 470 LYS A 257 CE NZ REMARK 470 GLU A 280 CD OE1 OE2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LEU A 292 O REMARK 470 MET B 1 CE REMARK 470 GLU B 15 CD OE1 OE2 REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 ASP B 54 OD1 REMARK 470 MET B 61 CE REMARK 470 GLU B 84 CD OE1 OE2 REMARK 470 LEU B 88 CD1 CD2 REMARK 470 ASP B 94 CG OD1 OD2 REMARK 470 GLU B 124 CD OE1 OE2 REMARK 470 GLU B 146 CD OE1 OE2 REMARK 470 LYS B 153 CE NZ REMARK 470 LYS B 155 CD CE NZ REMARK 470 GLU B 175 CD OE1 OE2 REMARK 470 GLN B 234 CD OE1 NE2 REMARK 470 LYS B 257 CE NZ REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 LYS B 287 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 510 O HOH A 518 1.75 REMARK 500 N MET B 1 O HOH B 401 1.97 REMARK 500 OE2 GLU A 258 NH1 ARG A 283 2.10 REMARK 500 O ALA A 215 O HOH A 401 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 64 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 TYR A 133 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP B 193 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 212 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 2 58.97 -115.98 REMARK 500 ILE A 71 124.09 -170.05 REMARK 500 TYR A 107 -53.13 95.76 REMARK 500 ALA A 210 49.22 -145.22 REMARK 500 THR B 77 13.09 -141.11 REMARK 500 TYR B 107 -57.16 91.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 152 O REMARK 620 2 VAL A 154 O 85.6 REMARK 620 3 LYS A 155 O 151.1 69.1 REMARK 620 4 ILE A 157 O 98.0 89.3 95.5 REMARK 620 5 HOH A 495 O 104.9 162.7 103.1 75.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 152 O REMARK 620 2 VAL B 154 O 82.2 REMARK 620 3 LYS B 155 O 147.0 69.6 REMARK 620 4 ILE B 157 O 98.6 81.7 94.0 REMARK 620 5 HOH B 535 O 82.1 94.9 83.6 176.3 REMARK 620 6 HOH B 536 O 100.3 171.6 110.2 90.0 93.4 REMARK 620 N 1 2 3 4 5 DBREF1 7JZC A 1 292 UNP A0A066Q637_ECOLX DBREF2 7JZC A A0A066Q637 1 292 DBREF1 7JZC B 1 292 UNP A0A066Q637_ECOLX DBREF2 7JZC B A0A066Q637 1 292 SEQADV 7JZC TRP A 48 UNP A0A066Q63 SER 48 ENGINEERED MUTATION SEQADV 7JZC TRP B 48 UNP A0A066Q63 SER 48 ENGINEERED MUTATION SEQRES 1 A 292 MET PHE THR GLY SER ILE VAL ALA ILE VAL THR PRO MET SEQRES 2 A 292 ASP GLU LYS GLY ASN VAL CYS ARG ALA SER LEU LYS LYS SEQRES 3 A 292 LEU ILE ASP TYR HIS VAL ALA SER GLY THR SER ALA ILE SEQRES 4 A 292 VAL SER VAL GLY THR THR GLY GLU TRP ALA THR LEU ASN SEQRES 5 A 292 HIS ASP GLU HIS ALA ASP VAL VAL MET MET THR LEU ASP SEQRES 6 A 292 LEU ALA ASP GLY ARG ILE PRO VAL ILE ALA GLY THR GLY SEQRES 7 A 292 ALA ASN ALA THR ALA GLU ALA ILE SER LEU THR GLN ARG SEQRES 8 A 292 PHE ASN ASP SER GLY ILE VAL GLY CYS LEU THR VAL THR SEQRES 9 A 292 PRO TYR TYR ASN ARG PRO SER GLN GLU GLY LEU TYR GLN SEQRES 10 A 292 HIS PHE LYS ALA ILE ALA GLU HIS THR ASP LEU PRO GLN SEQRES 11 A 292 ILE LEU TYR ASN VAL PRO SER ARG THR GLY CYS ASP LEU SEQRES 12 A 292 LEU PRO GLU THR VAL GLY ARG LEU ALA LYS VAL LYS ASN SEQRES 13 A 292 ILE ILE GLY ILE KPI GLU ALA THR GLY ASN LEU THR ARG SEQRES 14 A 292 VAL ASN GLN ILE LYS GLU LEU VAL SER ASP ASP PHE VAL SEQRES 15 A 292 LEU LEU SER GLY ASP ASP ALA SER ALA LEU ASP PHE MET SEQRES 16 A 292 GLN LEU GLY GLY HIS GLY VAL ILE SER VAL THR ALA ASN SEQRES 17 A 292 VAL ALA ALA ARG ASP MET ALA GLN MET CYS LYS LEU ALA SEQRES 18 A 292 ALA GLU GLY HIS PHE ALA GLU ALA ARG VAL ILE ASN GLN SEQRES 19 A 292 ARG LEU MET PRO LEU HIS ASN LYS LEU PHE VAL GLU PRO SEQRES 20 A 292 ASN PRO ILE PRO VAL LYS TRP ALA CYS LYS GLU LEU GLY SEQRES 21 A 292 LEU VAL ALA THR ASP THR LEU ARG LEU PRO MET THR PRO SEQRES 22 A 292 ILE THR ASP SER GLY ARG GLU THR VAL ARG ALA ALA LEU SEQRES 23 A 292 LYS HIS ALA GLY LEU LEU SEQRES 1 B 292 MET PHE THR GLY SER ILE VAL ALA ILE VAL THR PRO MET SEQRES 2 B 292 ASP GLU LYS GLY ASN VAL CYS ARG ALA SER LEU LYS LYS SEQRES 3 B 292 LEU ILE ASP TYR HIS VAL ALA SER GLY THR SER ALA ILE SEQRES 4 B 292 VAL SER VAL GLY THR THR GLY GLU TRP ALA THR LEU ASN SEQRES 5 B 292 HIS ASP GLU HIS ALA ASP VAL VAL MET MET THR LEU ASP SEQRES 6 B 292 LEU ALA ASP GLY ARG ILE PRO VAL ILE ALA GLY THR GLY SEQRES 7 B 292 ALA ASN ALA THR ALA GLU ALA ILE SER LEU THR GLN ARG SEQRES 8 B 292 PHE ASN ASP SER GLY ILE VAL GLY CYS LEU THR VAL THR SEQRES 9 B 292 PRO TYR TYR ASN ARG PRO SER GLN GLU GLY LEU TYR GLN SEQRES 10 B 292 HIS PHE LYS ALA ILE ALA GLU HIS THR ASP LEU PRO GLN SEQRES 11 B 292 ILE LEU TYR ASN VAL PRO SER ARG THR GLY CYS ASP LEU SEQRES 12 B 292 LEU PRO GLU THR VAL GLY ARG LEU ALA LYS VAL LYS ASN SEQRES 13 B 292 ILE ILE GLY ILE KPI GLU ALA THR GLY ASN LEU THR ARG SEQRES 14 B 292 VAL ASN GLN ILE LYS GLU LEU VAL SER ASP ASP PHE VAL SEQRES 15 B 292 LEU LEU SER GLY ASP ASP ALA SER ALA LEU ASP PHE MET SEQRES 16 B 292 GLN LEU GLY GLY HIS GLY VAL ILE SER VAL THR ALA ASN SEQRES 17 B 292 VAL ALA ALA ARG ASP MET ALA GLN MET CYS LYS LEU ALA SEQRES 18 B 292 ALA GLU GLY HIS PHE ALA GLU ALA ARG VAL ILE ASN GLN SEQRES 19 B 292 ARG LEU MET PRO LEU HIS ASN LYS LEU PHE VAL GLU PRO SEQRES 20 B 292 ASN PRO ILE PRO VAL LYS TRP ALA CYS LYS GLU LEU GLY SEQRES 21 B 292 LEU VAL ALA THR ASP THR LEU ARG LEU PRO MET THR PRO SEQRES 22 B 292 ILE THR ASP SER GLY ARG GLU THR VAL ARG ALA ALA LEU SEQRES 23 B 292 LYS HIS ALA GLY LEU LEU MODRES 7JZC KPI A 161 LYS MODIFIED RESIDUE MODRES 7JZC KPI B 161 LYS MODIFIED RESIDUE HET KPI A 161 14 HET KPI B 161 14 HET K A 301 1 HET K B 301 1 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM K POTASSIUM ION FORMUL 1 KPI 2(C9 H16 N2 O4) FORMUL 3 K 2(K 1+) FORMUL 5 HOH *277(H2 O) HELIX 1 AA1 CYS A 20 GLY A 35 1 16 HELIX 2 AA2 GLU A 47 LEU A 51 5 5 HELIX 3 AA3 ASN A 52 ASP A 68 1 17 HELIX 4 AA4 ALA A 81 ARG A 91 1 11 HELIX 5 AA5 SER A 111 HIS A 125 1 15 HELIX 6 AA6 VAL A 135 GLY A 140 1 6 HELIX 7 AA7 LEU A 144 LYS A 153 1 10 HELIX 8 AA8 THR A 168 GLU A 175 1 8 HELIX 9 AA9 ASP A 187 ALA A 189 5 3 HELIX 10 AB1 SER A 190 LEU A 197 1 8 HELIX 11 AB2 VAL A 205 VAL A 209 5 5 HELIX 12 AB3 ALA A 210 GLU A 223 1 14 HELIX 13 AB4 HIS A 225 LEU A 243 1 19 HELIX 14 AB5 PRO A 249 LEU A 259 1 11 HELIX 15 AB6 THR A 275 ALA A 289 1 15 HELIX 16 AB7 CYS B 20 GLY B 35 1 16 HELIX 17 AB8 GLU B 47 LEU B 51 5 5 HELIX 18 AB9 ASN B 52 ASP B 68 1 17 HELIX 19 AC1 ALA B 81 PHE B 92 1 12 HELIX 20 AC2 SER B 111 HIS B 125 1 15 HELIX 21 AC3 VAL B 135 GLY B 140 1 6 HELIX 22 AC4 LEU B 144 LYS B 153 1 10 HELIX 23 AC5 THR B 168 GLU B 175 1 8 HELIX 24 AC6 ASP B 187 LEU B 197 1 11 HELIX 25 AC7 VAL B 205 VAL B 209 5 5 HELIX 26 AC8 ALA B 210 GLU B 223 1 14 HELIX 27 AC9 HIS B 225 LEU B 243 1 19 HELIX 28 AD1 PRO B 249 LEU B 259 1 11 HELIX 29 AD2 THR B 275 ALA B 289 1 15 SHEET 1 AA1 9 GLY A 4 ALA A 8 0 SHEET 2 AA1 9 ALA A 38 SER A 41 1 O VAL A 40 N VAL A 7 SHEET 3 AA1 9 VAL A 73 GLY A 76 1 O ILE A 74 N SER A 41 SHEET 4 AA1 9 GLY A 99 VAL A 103 1 O LEU A 101 N ALA A 75 SHEET 5 AA1 9 GLN A 130 ASN A 134 1 O ILE A 131 N THR A 102 SHEET 6 AA1 9 ILE A 157 GLU A 162 1 O KPI A 161 N LEU A 132 SHEET 7 AA1 9 VAL A 182 SER A 185 1 O LEU A 184 N GLU A 162 SHEET 8 AA1 9 GLY A 201 SER A 204 1 O ILE A 203 N SER A 185 SHEET 9 AA1 9 GLY A 4 ALA A 8 1 N ILE A 6 O SER A 204 SHEET 1 AA2 9 GLY B 4 ALA B 8 0 SHEET 2 AA2 9 ALA B 38 SER B 41 1 O VAL B 40 N VAL B 7 SHEET 3 AA2 9 VAL B 73 GLY B 76 1 O ILE B 74 N ILE B 39 SHEET 4 AA2 9 GLY B 99 VAL B 103 1 O LEU B 101 N ALA B 75 SHEET 5 AA2 9 GLN B 130 ASN B 134 1 O ILE B 131 N CYS B 100 SHEET 6 AA2 9 ILE B 157 GLU B 162 1 O KPI B 161 N LEU B 132 SHEET 7 AA2 9 VAL B 182 SER B 185 1 O LEU B 184 N ILE B 160 SHEET 8 AA2 9 GLY B 201 SER B 204 1 O ILE B 203 N SER B 185 SHEET 9 AA2 9 GLY B 4 ALA B 8 1 N ILE B 6 O SER B 204 LINK C ILE A 160 N KPI A 161 1555 1555 1.35 LINK C KPI A 161 N GLU A 162 1555 1555 1.34 LINK C ILE B 160 N KPI B 161 1555 1555 1.34 LINK C KPI B 161 N GLU B 162 1555 1555 1.32 LINK O ALA A 152 K K A 301 1555 1555 2.75 LINK O VAL A 154 K K A 301 1555 1555 2.47 LINK O LYS A 155 K K A 301 1555 1555 2.94 LINK O ILE A 157 K K A 301 1555 1555 2.70 LINK K K A 301 O HOH A 495 1555 1555 2.11 LINK O ALA B 152 K K B 301 1555 1555 2.61 LINK O VAL B 154 K K B 301 1555 1555 2.64 LINK O LYS B 155 K K B 301 1555 1555 3.16 LINK O ILE B 157 K K B 301 1555 1555 2.72 LINK K K B 301 O HOH B 535 1555 1555 2.74 LINK K K B 301 O HOH B 536 1555 1555 2.66 CISPEP 1 ASN A 248 PRO A 249 0 11.72 CISPEP 2 LEU A 269 PRO A 270 0 15.78 CISPEP 3 ASN B 248 PRO B 249 0 4.88 CISPEP 4 LEU B 269 PRO B 270 0 13.03 CRYST1 121.129 121.129 111.271 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008256 0.004766 0.000000 0.00000 SCALE2 0.000000 0.009533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008987 0.00000 CONECT 1118 4340 CONECT 1130 4340 CONECT 1137 4340 CONECT 1150 4340 CONECT 1169 1175 CONECT 1175 1169 1176 CONECT 1176 1175 1177 1187 CONECT 1177 1176 1178 CONECT 1178 1177 1179 CONECT 1179 1178 1180 CONECT 1180 1179 1181 CONECT 1181 1180 1182 CONECT 1182 1181 1183 1184 CONECT 1183 1182 CONECT 1184 1182 1185 1186 CONECT 1185 1184 CONECT 1186 1184 CONECT 1187 1176 1188 1189 CONECT 1188 1187 CONECT 1189 1187 CONECT 3273 4341 CONECT 3285 4341 CONECT 3292 4341 CONECT 3306 4341 CONECT 3325 3331 CONECT 3331 3325 3332 CONECT 3332 3331 3333 3343 CONECT 3333 3332 3334 CONECT 3334 3333 3335 CONECT 3335 3334 3336 CONECT 3336 3335 3337 CONECT 3337 3336 3338 CONECT 3338 3337 3339 3340 CONECT 3339 3338 CONECT 3340 3338 3341 3342 CONECT 3341 3340 CONECT 3342 3340 CONECT 3343 3332 3344 3345 CONECT 3344 3343 CONECT 3345 3343 CONECT 4340 1118 1130 1137 1150 CONECT 4340 4436 CONECT 4341 3273 3285 3292 3306 CONECT 4341 4598 4599 CONECT 4436 4340 CONECT 4598 4341 CONECT 4599 4341 MASTER 375 0 4 29 18 0 0 6 4576 2 47 46 END