HEADER OXIDOREDUCTASE 09-SEP-20 7K2U TITLE DHODH IN COMPLEX WITH LIGAND 13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRUNCATED; COMPND 5 SYNONYM: DHODEHASE,DIHYDROOROTATE OXIDASE; COMPND 6 EC: 1.3.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHODH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIHYDROOROTATE DEHYDROGENASE, DHODH, OXIDOREDUCTASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR P.L.SHAFFER REVDAT 2 06-MAR-24 7K2U 1 REMARK REVDAT 1 21-OCT-20 7K2U 0 JRNL AUTH L.G.DERATT,E.CHRISTINE PIETSCH,A.TANNER,P.SHAFFER,E.JACOBY, JRNL AUTH 2 W.WANG,F.KAZMI,X.ZHANG,R.M.ATTAR,J.P.EDWARDS,S.D.KUDUK JRNL TITL A CARBOXYLIC ACID ISOSTERE SCREEN OF THE DHODH INHIBITOR JRNL TITL 2 BREQUINAR. JRNL REF BIOORG.MED.CHEM.LETT. V. 30 27589 2020 JRNL REFN ESSN 1464-3405 JRNL PMID 33007394 JRNL DOI 10.1016/J.BMCL.2020.127589 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 56134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3016 ; 0.011 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): 2927 ; 0.004 ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4086 ; 1.553 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 6707 ; 1.295 ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.020 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;37.026 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;11.878 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.365 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.088 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3421 ; 0.007 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): 672 ; 0.003 ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -22.971 23.574 24.856 REMARK 3 T TENSOR REMARK 3 T11: 0.1739 T22: 0.1181 REMARK 3 T33: 0.0932 T12: -0.0513 REMARK 3 T13: -0.0552 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 5.7610 L22: 1.9411 REMARK 3 L33: 3.3774 L12: 0.1175 REMARK 3 L13: 0.7625 L23: -0.7977 REMARK 3 S TENSOR REMARK 3 S11: -0.0774 S12: -0.2788 S13: 0.1538 REMARK 3 S21: 0.2195 S22: 0.0230 S23: -0.2904 REMARK 3 S31: -0.2016 S32: 0.3928 S33: 0.0544 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 396 REMARK 3 ORIGIN FOR THE GROUP (A): -34.490 14.845 7.712 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0215 REMARK 3 T33: 0.0026 T12: -0.0206 REMARK 3 T13: 0.0013 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3639 L22: 1.5514 REMARK 3 L33: 1.5576 L12: 0.1432 REMARK 3 L13: -0.0441 L23: -0.5425 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.0747 S13: 0.0160 REMARK 3 S21: -0.1224 S22: 0.0256 S23: 0.0222 REMARK 3 S31: 0.0024 S32: -0.0221 S33: 0.0239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 78.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10 M NAACETATE PH 4.8, 2.30 M REMARK 280 (NH4)2SO4, 30 % GLYCEROL, 18% (W/V) PEG 4000, 0.1M NA3CITRATE REMARK 280 PH5.75, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.83267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.91633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.91633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.83267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 MET A 30 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 70 CD NE CZ NH1 NH2 REMARK 480 ARG A 72 NE CZ NH1 NH2 REMARK 480 LYS A 87 CD CE NZ REMARK 480 LYS A 124 CE NZ REMARK 480 GLU A 229 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 -60.50 -128.90 REMARK 500 ARG A 133 11.56 -140.10 REMARK 500 SER A 337 20.15 -140.15 REMARK 500 TYR A 356 -66.99 -143.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VU7 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 414 DBREF 7K2U A 30 396 UNP Q02127 PYRD_HUMAN 29 395 SEQADV 7K2U GLY A 28 UNP Q02127 EXPRESSION TAG SEQADV 7K2U ALA A 29 UNP Q02127 EXPRESSION TAG SEQRES 1 A 369 GLY ALA MET ALA THR GLY ASP GLU ARG PHE TYR ALA GLU SEQRES 2 A 369 HIS LEU MET PRO THR LEU GLN GLY LEU LEU ASP PRO GLU SEQRES 3 A 369 SER ALA HIS ARG LEU ALA VAL ARG PHE THR SER LEU GLY SEQRES 4 A 369 LEU LEU PRO ARG ALA ARG PHE GLN ASP SER ASP MET LEU SEQRES 5 A 369 GLU VAL ARG VAL LEU GLY HIS LYS PHE ARG ASN PRO VAL SEQRES 6 A 369 GLY ILE ALA ALA GLY PHE ASP LYS HIS GLY GLU ALA VAL SEQRES 7 A 369 ASP GLY LEU TYR LYS MET GLY PHE GLY PHE VAL GLU ILE SEQRES 8 A 369 GLY SER VAL THR PRO LYS PRO GLN GLU GLY ASN PRO ARG SEQRES 9 A 369 PRO ARG VAL PHE ARG LEU PRO GLU ASP GLN ALA VAL ILE SEQRES 10 A 369 ASN ARG TYR GLY PHE ASN SER HIS GLY LEU SER VAL VAL SEQRES 11 A 369 GLU HIS ARG LEU ARG ALA ARG GLN GLN LYS GLN ALA LYS SEQRES 12 A 369 LEU THR GLU ASP GLY LEU PRO LEU GLY VAL ASN LEU GLY SEQRES 13 A 369 LYS ASN LYS THR SER VAL ASP ALA ALA GLU ASP TYR ALA SEQRES 14 A 369 GLU GLY VAL ARG VAL LEU GLY PRO LEU ALA ASP TYR LEU SEQRES 15 A 369 VAL VAL ASN VAL SER SER PRO ASN THR ALA GLY LEU ARG SEQRES 16 A 369 SER LEU GLN GLY LYS ALA GLU LEU ARG ARG LEU LEU THR SEQRES 17 A 369 LYS VAL LEU GLN GLU ARG ASP GLY LEU ARG ARG VAL HIS SEQRES 18 A 369 ARG PRO ALA VAL LEU VAL LYS ILE ALA PRO ASP LEU THR SEQRES 19 A 369 SER GLN ASP LYS GLU ASP ILE ALA SER VAL VAL LYS GLU SEQRES 20 A 369 LEU GLY ILE ASP GLY LEU ILE VAL THR ASN THR THR VAL SEQRES 21 A 369 SER ARG PRO ALA GLY LEU GLN GLY ALA LEU ARG SER GLU SEQRES 22 A 369 THR GLY GLY LEU SER GLY LYS PRO LEU ARG ASP LEU SER SEQRES 23 A 369 THR GLN THR ILE ARG GLU MET TYR ALA LEU THR GLN GLY SEQRES 24 A 369 ARG VAL PRO ILE ILE GLY VAL GLY GLY VAL SER SER GLY SEQRES 25 A 369 GLN ASP ALA LEU GLU LYS ILE ARG ALA GLY ALA SER LEU SEQRES 26 A 369 VAL GLN LEU TYR THR ALA LEU THR PHE TRP GLY PRO PRO SEQRES 27 A 369 VAL VAL GLY LYS VAL LYS ARG GLU LEU GLU ALA LEU LEU SEQRES 28 A 369 LYS GLU GLN GLY PHE GLY GLY VAL THR ASP ALA ILE GLY SEQRES 29 A 369 ALA ASP HIS ARG ARG HET FMN A 401 31 HET ORO A 402 11 HET VU7 A 403 36 HET ACT A 404 4 HET ACT A 405 4 HET SO4 A 406 5 HET GOL A 407 6 HET ACT A 408 4 HET ACT A 409 4 HET SO4 A 410 5 HET SO4 A 411 5 HET PGE A 412 10 HET GOL A 413 6 HET SO4 A 414 5 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM VU7 6-FLUORO-2-(2'-FLUORO[1,1'-BIPHENYL]-4-YL)-N-METHOXY-3- HETNAM 2 VU7 METHYLQUINOLINE-4-CARBOXAMIDE HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 ORO C5 H4 N2 O4 FORMUL 4 VU7 C24 H18 F2 N2 O2 FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 7 SO4 4(O4 S 2-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 13 PGE C6 H14 O4 FORMUL 16 HOH *263(H2 O) HELIX 1 AA1 THR A 32 HIS A 41 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 ASP A 51 LEU A 65 1 15 HELIX 4 AA4 SER A 76 GLU A 80 5 5 HELIX 5 AA5 ALA A 104 MET A 111 1 8 HELIX 6 AA6 PRO A 138 ASP A 140 5 3 HELIX 7 AA7 GLY A 153 ALA A 163 1 11 HELIX 8 AA8 ARG A 164 ASP A 174 1 11 HELIX 9 AA9 ASP A 190 GLY A 203 1 14 HELIX 10 AB1 PRO A 204 ALA A 206 5 3 HELIX 11 AB2 LEU A 221 GLN A 225 5 5 HELIX 12 AB3 GLY A 226 GLY A 243 1 18 HELIX 13 AB4 ARG A 245 ARG A 249 5 5 HELIX 14 AB5 THR A 261 GLY A 276 1 16 HELIX 15 AB6 LEU A 309 THR A 324 1 16 HELIX 16 AB7 SER A 338 GLY A 349 1 12 HELIX 17 AB8 TYR A 356 GLY A 363 1 8 HELIX 18 AB9 PRO A 365 GLN A 381 1 17 HELIX 19 AC1 GLY A 385 ILE A 390 1 6 HELIX 20 AC2 GLY A 391 ARG A 396 5 6 SHEET 1 AA1 2 VAL A 81 VAL A 83 0 SHEET 2 AA1 2 HIS A 86 PHE A 88 -1 O PHE A 88 N VAL A 81 SHEET 1 AA2 9 VAL A 92 ILE A 94 0 SHEET 2 AA2 9 PHE A 115 VAL A 121 1 O PHE A 115 N ILE A 94 SHEET 3 AA2 9 LEU A 178 LEU A 182 1 O GLY A 179 N VAL A 116 SHEET 4 AA2 9 TYR A 208 ASN A 212 1 O VAL A 210 N LEU A 182 SHEET 5 AA2 9 ALA A 251 ILE A 256 1 O ALA A 251 N LEU A 209 SHEET 6 AA2 9 GLY A 279 VAL A 282 1 O ILE A 281 N VAL A 254 SHEET 7 AA2 9 ILE A 330 VAL A 333 1 O ILE A 331 N LEU A 280 SHEET 8 AA2 9 ALA A 350 LEU A 355 1 O LEU A 352 N GLY A 332 SHEET 9 AA2 9 VAL A 92 ILE A 94 1 N GLY A 93 O VAL A 353 SHEET 1 AA3 3 VAL A 134 LEU A 137 0 SHEET 2 AA3 3 ALA A 142 ASN A 145 -1 O ILE A 144 N PHE A 135 SHEET 3 AA3 3 GLY A 303 GLY A 306 -1 O SER A 305 N VAL A 143 CISPEP 1 GLY A 119 SER A 120 0 5.31 CISPEP 2 ARG A 131 PRO A 132 0 2.81 CISPEP 3 VAL A 282 THR A 283 0 12.45 SITE 1 AC1 24 ALA A 95 ALA A 96 GLY A 97 LYS A 100 SITE 2 AC1 24 SER A 120 ASN A 145 ASN A 181 ASN A 212 SITE 3 AC1 24 LYS A 255 THR A 283 ASN A 284 THR A 285 SITE 4 AC1 24 SER A 305 GLY A 306 LEU A 309 VAL A 333 SITE 5 AC1 24 GLY A 334 GLY A 335 LEU A 355 TYR A 356 SITE 6 AC1 24 THR A 357 ORO A 402 HOH A 531 HOH A 546 SITE 1 AC2 11 LYS A 100 ASN A 145 TYR A 147 GLY A 148 SITE 2 AC2 11 PHE A 149 ASN A 212 SER A 215 ASN A 217 SITE 3 AC2 11 ASN A 284 THR A 285 FMN A 401 SITE 1 AC3 17 TYR A 38 LEU A 42 MET A 43 GLN A 47 SITE 2 AC3 17 PRO A 52 ALA A 55 HIS A 56 ALA A 59 SITE 3 AC3 17 THR A 63 LEU A 67 LEU A 68 VAL A 134 SITE 4 AC3 17 ARG A 136 TYR A 356 THR A 360 PHE A 361 SITE 5 AC3 17 PRO A 364 SITE 1 AC4 7 LYS A 307 PRO A 308 ASP A 311 THR A 314 SITE 2 AC4 7 GLN A 315 ARG A 318 HOH A 505 SITE 1 AC5 7 GLN A 168 ALA A 169 THR A 172 LEU A 205 SITE 2 AC5 7 ASP A 207 HOH A 501 HOH A 650 SITE 1 AC6 4 ARG A 245 VAL A 247 HIS A 248 HOH A 634 SITE 1 AC7 8 GLU A 53 HIS A 56 ARG A 57 LYS A 100 SITE 2 AC7 8 HIS A 101 TYR A 147 ASN A 150 HOH A 667 SITE 1 AC8 4 ARG A 245 ARG A 246 THR A 301 HOH A 681 SITE 1 AC9 2 SER A 262 HOH A 526 SITE 1 AD1 2 ARG A 160 HOH A 563 SITE 1 AD2 3 ARG A 57 HIS A 152 HOH A 561 SITE 1 AD3 4 TYR A 38 LEU A 46 PHE A 62 LEU A 68 SITE 1 AD4 5 HIS A 86 ASP A 207 ARG A 246 VAL A 247 SITE 2 AD4 5 ARG A 249 SITE 1 AD5 4 LYS A 170 THR A 261 GLN A 263 HOH A 526 CRYST1 90.607 90.607 122.749 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011037 0.006372 0.000000 0.00000 SCALE2 0.000000 0.012744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008147 0.00000