HEADER HYDROLASE/DNA 10-SEP-20 7K32 TITLE CRYSTAL STRUCTURE OF ENDONUCLEASE Q COMPLEX WITH 27-MER DUPLEX TITLE 2 SUBSTRATE WITH AN ABASIC LESION AT THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE Q; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (27-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (27-MER); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE, DEAMINATION, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,N.M.MOELLER,S.BANERJEE,L.YIN,K.ORELLANA,H.AIHARA REVDAT 2 18-OCT-23 7K32 1 REMARK REVDAT 1 17-MAR-21 7K32 0 JRNL AUTH K.SHI,N.H.MOELLER,S.BANERJEE,J.L.MCCANN,M.A.CARPENTER,L.YIN, JRNL AUTH 2 R.MOORTHY,K.ORELLANA,D.A.HARKI,R.S.HARRIS,H.AIHARA JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF DISTINCT DEAMINATED DNA JRNL TITL 2 LESIONS BY ENDONUCLEASE Q. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33658373 JRNL DOI 10.1073/PNAS.2021120118 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.3 REMARK 3 NUMBER OF REFLECTIONS : 12328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 88.5900 - 4.9300 0.95 4279 214 0.1472 0.2053 REMARK 3 2 4.9300 - 3.9200 0.94 4222 207 0.2453 0.2696 REMARK 3 3 3.9200 - 3.4200 0.60 2709 113 0.3448 0.4387 REMARK 3 4 3.4200 - 3.1100 0.12 556 28 0.4440 0.5707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 121.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 131.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7317 25.3318 -18.7858 REMARK 3 T TENSOR REMARK 3 T11: 0.9020 T22: 0.8511 REMARK 3 T33: 0.4860 T12: -0.1276 REMARK 3 T13: 0.1996 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.5984 L22: 8.5284 REMARK 3 L33: 7.7721 L12: -0.6534 REMARK 3 L13: 2.1407 L23: 2.9845 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: -0.2155 S13: -0.8406 REMARK 3 S21: 0.9485 S22: 0.3013 S23: 0.0327 REMARK 3 S31: 1.8970 S32: -0.5559 S33: -0.3811 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5077 33.0727 -30.3909 REMARK 3 T TENSOR REMARK 3 T11: 0.6116 T22: 0.8962 REMARK 3 T33: 0.4836 T12: 0.0256 REMARK 3 T13: 0.0082 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 4.1057 L22: 5.3528 REMARK 3 L33: 3.6483 L12: 0.4729 REMARK 3 L13: 2.3947 L23: -2.1121 REMARK 3 S TENSOR REMARK 3 S11: 0.1349 S12: 0.4328 S13: 0.1624 REMARK 3 S21: -0.3960 S22: 0.0496 S23: 0.5572 REMARK 3 S31: 0.7943 S32: -0.9588 S33: -0.1453 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0857 37.9767 -31.3679 REMARK 3 T TENSOR REMARK 3 T11: 0.7128 T22: 0.8731 REMARK 3 T33: 0.5382 T12: -0.0191 REMARK 3 T13: 0.0638 T23: 0.1878 REMARK 3 L TENSOR REMARK 3 L11: 9.0160 L22: 4.1731 REMARK 3 L33: 4.8519 L12: -0.5123 REMARK 3 L13: 3.4367 L23: 0.4884 REMARK 3 S TENSOR REMARK 3 S11: 0.2369 S12: 0.2461 S13: 0.4391 REMARK 3 S21: -0.8263 S22: -0.2694 S23: -0.4896 REMARK 3 S31: -0.0184 S32: 0.6390 S33: 0.1924 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3759 34.7406 -20.3924 REMARK 3 T TENSOR REMARK 3 T11: 0.5394 T22: 0.8722 REMARK 3 T33: 0.5729 T12: 0.1632 REMARK 3 T13: -0.0090 T23: 0.1489 REMARK 3 L TENSOR REMARK 3 L11: 8.6341 L22: 4.0820 REMARK 3 L33: 7.8457 L12: 5.5665 REMARK 3 L13: -3.9751 L23: -4.5177 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: -0.0218 S13: -0.6352 REMARK 3 S21: -0.3817 S22: -0.7167 S23: -0.7042 REMARK 3 S31: 0.3314 S32: 0.8247 S33: 0.7391 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0712 32.4870 -23.1731 REMARK 3 T TENSOR REMARK 3 T11: 0.6407 T22: 0.5902 REMARK 3 T33: 0.6988 T12: 0.0338 REMARK 3 T13: 0.0901 T23: 0.1871 REMARK 3 L TENSOR REMARK 3 L11: 5.4398 L22: 4.6639 REMARK 3 L33: 9.8202 L12: -2.3804 REMARK 3 L13: -1.7739 L23: 1.3387 REMARK 3 S TENSOR REMARK 3 S11: -0.5990 S12: -0.7399 S13: -0.5692 REMARK 3 S21: -0.1383 S22: 0.3274 S23: -0.4955 REMARK 3 S31: 0.8623 S32: 1.4455 S33: 0.2530 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5922 27.0045 -6.8226 REMARK 3 T TENSOR REMARK 3 T11: 0.9478 T22: 0.8348 REMARK 3 T33: 0.7863 T12: 0.4092 REMARK 3 T13: -0.0922 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 3.3268 L22: 3.9671 REMARK 3 L33: 8.2720 L12: -0.2559 REMARK 3 L13: 0.2823 L23: -1.8759 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.1409 S13: -0.3757 REMARK 3 S21: 0.6726 S22: -0.2518 S23: -0.6148 REMARK 3 S31: 1.1791 S32: 1.3750 S33: 0.2886 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6917 -9.2678 -0.9575 REMARK 3 T TENSOR REMARK 3 T11: 3.0051 T22: 1.4713 REMARK 3 T33: 2.1821 T12: -0.0656 REMARK 3 T13: -0.1015 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.9068 L22: 3.9041 REMARK 3 L33: 2.7887 L12: -0.5940 REMARK 3 L13: -0.0785 L23: -0.9489 REMARK 3 S TENSOR REMARK 3 S11: -1.5582 S12: 1.0471 S13: -0.6022 REMARK 3 S21: -2.0002 S22: 0.2328 S23: 0.7062 REMARK 3 S31: 1.5690 S32: 0.1986 S33: 0.9502 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2648 6.4043 -22.3902 REMARK 3 T TENSOR REMARK 3 T11: 2.3942 T22: 1.1087 REMARK 3 T33: 1.5481 T12: 0.3846 REMARK 3 T13: -0.1941 T23: -0.2169 REMARK 3 L TENSOR REMARK 3 L11: 2.3304 L22: 2.9416 REMARK 3 L33: 8.8834 L12: -0.6474 REMARK 3 L13: 2.0723 L23: -0.8643 REMARK 3 S TENSOR REMARK 3 S11: 0.2473 S12: 0.8958 S13: -1.3375 REMARK 3 S21: -0.4818 S22: 0.1218 S23: 0.7862 REMARK 3 S31: 1.5182 S32: 1.0816 S33: -0.5500 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7765 16.2406 -52.8087 REMARK 3 T TENSOR REMARK 3 T11: 2.0935 T22: 2.2672 REMARK 3 T33: 1.9380 T12: 0.5283 REMARK 3 T13: 0.4070 T23: -0.1879 REMARK 3 L TENSOR REMARK 3 L11: 3.7662 L22: 6.2190 REMARK 3 L33: 4.5522 L12: -3.4045 REMARK 3 L13: -3.7653 L23: 5.3231 REMARK 3 S TENSOR REMARK 3 S11: -0.7075 S12: 1.0737 S13: -0.3181 REMARK 3 S21: 0.2690 S22: -0.8315 S23: 0.6178 REMARK 3 S31: 1.8507 S32: 1.5869 S33: 1.2181 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4285 17.7470 -72.2820 REMARK 3 T TENSOR REMARK 3 T11: 2.6443 T22: 2.5535 REMARK 3 T33: 2.5227 T12: 1.8112 REMARK 3 T13: 0.8473 T23: -0.3820 REMARK 3 L TENSOR REMARK 3 L11: 7.4118 L22: 7.5914 REMARK 3 L33: 2.1445 L12: -1.4154 REMARK 3 L13: -1.2506 L23: 2.8191 REMARK 3 S TENSOR REMARK 3 S11: 0.6524 S12: 0.8558 S13: -0.1265 REMARK 3 S21: -0.5092 S22: -0.7476 S23: 0.7040 REMARK 3 S31: -0.3169 S32: -0.2966 S33: 0.5373 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5777 15.7510 -56.3678 REMARK 3 T TENSOR REMARK 3 T11: 1.9921 T22: 2.2282 REMARK 3 T33: 1.8488 T12: 0.5406 REMARK 3 T13: 0.4300 T23: -0.3787 REMARK 3 L TENSOR REMARK 3 L11: 6.8219 L22: 6.9254 REMARK 3 L33: 7.5830 L12: -5.8175 REMARK 3 L13: -3.8924 L23: 6.7554 REMARK 3 S TENSOR REMARK 3 S11: 0.9909 S12: 0.5713 S13: 1.0616 REMARK 3 S21: 0.3869 S22: -0.9326 S23: 1.2287 REMARK 3 S31: 1.9128 S32: 0.7658 S33: 0.0609 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0263 5.3287 -16.1393 REMARK 3 T TENSOR REMARK 3 T11: 2.0473 T22: 1.0294 REMARK 3 T33: 1.4040 T12: 0.0594 REMARK 3 T13: -0.1249 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 1.9762 L22: 6.4422 REMARK 3 L33: 3.2958 L12: -3.4429 REMARK 3 L13: 3.1251 L23: -4.2445 REMARK 3 S TENSOR REMARK 3 S11: 1.0763 S12: 0.0785 S13: -1.3308 REMARK 3 S21: -1.7118 S22: -0.3995 S23: 0.7150 REMARK 3 S31: 3.2808 S32: 0.7359 S33: -0.6719 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17827 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.110 REMARK 200 RESOLUTION RANGE LOW (A) : 88.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 1.00200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MM TRIS-HCL PH 7.4, 0.15 M NACL, 1 REMARK 280 MM MGCL2, AND 4 MM BETA-MERCAPTOETHANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 77.01000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.46174 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.50333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 77.01000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.46174 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.50333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 77.01000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.46174 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.50333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.92349 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 79.00667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 88.92349 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 79.00667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 88.92349 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.00667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 396 REMARK 465 ILE A 397 REMARK 465 GLU A 398 REMARK 465 ILE A 399 REMARK 465 SER A 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 91 OE1 GLN A 94 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 17 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 8 98.11 -160.74 REMARK 500 ILE A 59 -62.94 -93.73 REMARK 500 ASP A 60 -123.87 -122.62 REMARK 500 ARG A 82 65.13 62.43 REMARK 500 HIS A 139 53.31 39.77 REMARK 500 ALA A 140 13.01 -65.83 REMARK 500 TRP A 144 -70.97 -106.56 REMARK 500 LYS A 270 37.82 -84.07 REMARK 500 CYS A 271 -39.45 -158.09 REMARK 500 LEU A 286 32.56 -89.27 REMARK 500 ASP A 295 2.31 -69.43 REMARK 500 PHE A 333 -149.99 -117.03 REMARK 500 ILE A 341 -50.04 -126.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 76 OE1 REMARK 620 2 GLU A 76 OE2 62.5 REMARK 620 3 HIS A 84 ND1 80.8 84.5 REMARK 620 4 HIS A 139 NE2 145.4 83.6 89.4 REMARK 620 5 ASN A 193 OD1 96.5 93.6 177.2 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 169 O REMARK 620 2 LEU A 170 O 78.9 REMARK 620 3 ALA A 172 O 79.6 86.7 REMARK 620 4 GLU A 205 OE2 73.2 104.1 148.0 REMARK 620 5 LEU A 237 O 157.2 83.4 113.8 97.6 REMARK 620 6 TYR A 299 OH 117.8 157.8 82.5 95.2 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 249 SG REMARK 620 2 CYS A 252 SG 137.1 REMARK 620 3 CYS A 268 SG 106.4 101.5 REMARK 620 4 CYS A 271 SG 100.2 110.8 91.9 REMARK 620 N 1 2 3 DBREF 7K32 A 1 400 UNP I6V2I0 I6V2I0_9EURY 1 400 DBREF 7K32 B 1 27 PDB 7K32 7K32 1 27 DBREF 7K32 C 1 27 PDB 7K32 7K32 1 27 SEQADV 7K32 ASN A 193 UNP I6V2I0 ASP 193 ENGINEERED MUTATION SEQRES 1 A 400 MET ILE VAL ASP GLY ASP LEU HIS ILE HIS SER HIS TYR SEQRES 2 A 400 SER LYS ALA VAL SER LYS LEU MET THR PHE PRO ILE ILE SEQRES 3 A 400 ALA GLU ASN ALA LYS LEU LYS GLY LEU ASN LEU VAL GLY SEQRES 4 A 400 THR GLY ASP SER LEU ASN PRO HIS TRP GLU LYS GLU LEU SEQRES 5 A 400 LEU LYS HIS SER LYS PRO ILE ASP ASP GLY THR PHE GLU SEQRES 6 A 400 VAL ASN GLY VAL LYS PHE ILE LEU THR CYS GLU VAL GLU SEQRES 7 A 400 ASP LYS ARG ARG VAL HIS HIS LEU LEU ILE PHE PRO THR SEQRES 8 A 400 LEU SER GLN VAL ARG GLU PHE ARG GLU LYS VAL LYS ILE SEQRES 9 A 400 TYR SER THR ASN ILE GLU SER GLU GLY ARG PRO ASN LEU SEQRES 10 A 400 ASN LEU THR ALA GLU GLU ILE ALA GLU MET ALA ASN GLU SEQRES 11 A 400 LEU ASP ILE LEU ILE GLY PRO ALA HIS ALA PHE THR PRO SEQRES 12 A 400 TRP THR SER LEU TYR LYS GLU TYR ASP SER LEU LYS ASP SEQRES 13 A 400 ALA TYR GLY ASP ALA LYS ILE ASP PHE LEU GLU LEU GLY SEQRES 14 A 400 LEU SER ALA ASP SER ASP MET ALA ASP MET ILE LYS ALA SEQRES 15 A 400 HIS HIS SER ILE PRO TYR LEU SER ASN SER ASN ALA HIS SEQRES 16 A 400 SER PRO ASN PRO HIS ARG LEU GLY ARG GLU PHE ASN ARG SEQRES 17 A 400 PHE GLU VAL LYS ASP VAL THR PHE GLU GLU ILE ARG LYS SEQRES 18 A 400 ALA ILE LYS GLY VAL GLY GLY ARG LYS ILE MET LEU ASN SEQRES 19 A 400 ALA GLY LEU ASP PRO ARG LEU GLY LYS TYR HIS LEU THR SEQRES 20 A 400 ALA CYS SER ARG CYS TYR THR LYS TYR THR LEU GLN ASP SEQRES 21 A 400 ALA VAL SER LEU SER TRP LYS CYS PRO LYS CYS GLY GLY SEQRES 22 A 400 ILE ILE LYS LYS GLY VAL ARG ASP ARG ILE LEU GLU LEU SEQRES 23 A 400 ALA ASP THR SER GLU LYS PRO LYS ASP ARG PRO PRO TYR SEQRES 24 A 400 VAL ARG LEU ALA PRO LEU ALA GLU ILE ILE ALA MET VAL SEQRES 25 A 400 LEU GLY LYS GLY ILE GLU SER LYS ALA VAL LYS LEU LEU SEQRES 26 A 400 TRP ASN ARG PHE LEU ARG GLU PHE GLY SER GLU ILE ARG SEQRES 27 A 400 VAL LEU ILE ASP LEU PRO ILE GLU SER ILE ALA SER VAL SEQRES 28 A 400 HIS GLU GLY VAL ALA LYS ALA ILE TRP ALA TYR ARG ASN SEQRES 29 A 400 ASN LYS LEU ILE ILE VAL PRO GLY GLY GLY GLY LYS TYR SEQRES 30 A 400 GLY GLU ILE ARG ILE PRO GLU GLU ILE LEU LYS ALA LYS SEQRES 31 A 400 ILE GLU ASP LEU ASN SER ILE GLU ILE SER SEQRES 1 B 27 DG DT DC DG DT DT DC DG DC DT DA DC DA SEQRES 2 B 27 DG DG BRU DC DG DT DC DG DG DT DC DT DG SEQRES 3 B 27 DC SEQRES 1 C 27 DG DC DA DG DA DC DC DG DA DC DG DA DC SEQRES 2 C 27 3DR DT DG DT DA DG DC DG DA DA DC DG DA SEQRES 3 C 27 DC HET BRU B 16 20 HET 3DR C 14 11 HET ZN A 501 1 HET ZN A 502 1 HET MG A 503 1 HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETSYN 3DR ABASIC DIDEOXYRIBOSE FORMUL 2 BRU C9 H12 BR N2 O8 P FORMUL 3 3DR C5 H11 O6 P FORMUL 4 ZN 2(ZN 2+) FORMUL 6 MG MG 2+ HELIX 1 AA1 THR A 22 GLY A 34 1 13 HELIX 2 AA2 ASN A 45 HIS A 55 1 11 HELIX 3 AA3 THR A 91 LYS A 103 1 13 HELIX 4 AA4 ILE A 104 SER A 106 5 3 HELIX 5 AA5 THR A 120 LEU A 131 1 12 HELIX 6 AA6 SER A 153 GLY A 159 1 7 HELIX 7 AA7 ASP A 173 MET A 179 1 7 HELIX 8 AA8 LYS A 181 ILE A 186 5 6 HELIX 9 AA9 THR A 215 GLY A 225 1 11 HELIX 10 AB1 PRO A 239 GLY A 242 5 4 HELIX 11 AB2 THR A 257 SER A 265 1 9 HELIX 12 AB3 GLY A 278 LEU A 286 1 9 HELIX 13 AB4 PRO A 304 GLY A 314 1 11 HELIX 14 AB5 SER A 319 PHE A 333 1 15 HELIX 15 AB6 SER A 335 ILE A 341 1 7 HELIX 16 AB7 PRO A 344 ALA A 349 1 6 HELIX 17 AB8 HIS A 352 ASN A 364 1 13 HELIX 18 AB9 PRO A 383 ALA A 389 1 7 SHEET 1 AA1 8 LYS A 57 PRO A 58 0 SHEET 2 AA1 8 THR A 63 VAL A 66 -1 O GLU A 65 N LYS A 57 SHEET 3 AA1 8 VAL A 69 ILE A 72 -1 O PHE A 71 N PHE A 64 SHEET 4 AA1 8 LEU A 37 GLY A 39 1 N VAL A 38 O LYS A 70 SHEET 5 AA1 8 ILE A 2 ASP A 6 1 N ASP A 6 O GLY A 39 SHEET 6 AA1 8 PHE A 206 GLU A 210 -1 O PHE A 209 N VAL A 3 SHEET 7 AA1 8 LYS A 230 LEU A 237 -1 O ALA A 235 N PHE A 206 SHEET 8 AA1 8 ARG A 301 LEU A 302 1 O LEU A 302 N GLY A 236 SHEET 1 AA2 3 THR A 74 GLU A 78 0 SHEET 2 AA2 3 HIS A 84 ILE A 88 -1 O LEU A 87 N CYS A 75 SHEET 3 AA2 3 LEU A 134 GLY A 136 -1 O GLY A 136 N LEU A 86 SHEET 1 AA3 2 LEU A 166 GLU A 167 0 SHEET 2 AA3 2 TYR A 188 LEU A 189 1 O LEU A 189 N LEU A 166 SHEET 1 AA4 2 ALA A 248 CYS A 249 0 SHEET 2 AA4 2 ILE A 275 LYS A 276 -1 O LYS A 276 N ALA A 248 SHEET 1 AA5 2 ILE A 368 VAL A 370 0 SHEET 2 AA5 2 GLU A 379 ARG A 381 -1 O GLU A 379 N VAL A 370 LINK O3' DG B 15 P BRU B 16 1555 1555 1.61 LINK O3' BRU B 16 P DC B 17 1555 1555 1.61 LINK O3' DC C 13 P 3DR C 14 1555 1555 1.61 LINK O3' 3DR C 14 P DT C 15 1555 1555 1.61 LINK OE1 GLU A 76 ZN ZN A 502 1555 1555 2.11 LINK OE2 GLU A 76 ZN ZN A 502 1555 1555 2.05 LINK ND1 HIS A 84 ZN ZN A 502 1555 1555 2.14 LINK NE2 HIS A 139 ZN ZN A 502 1555 1555 2.07 LINK O GLY A 169 MG MG A 503 1555 1555 2.61 LINK O LEU A 170 MG MG A 503 1555 1555 2.50 LINK O ALA A 172 MG MG A 503 1555 1555 2.59 LINK OD1 ASN A 193 ZN ZN A 502 1555 1555 2.15 LINK OE2 GLU A 205 MG MG A 503 1555 1555 2.16 LINK O LEU A 237 MG MG A 503 1555 1555 2.69 LINK SG CYS A 249 ZN ZN A 501 1555 1555 2.31 LINK SG CYS A 252 ZN ZN A 501 1555 1555 2.29 LINK SG CYS A 268 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 271 ZN ZN A 501 1555 1555 2.33 LINK OH TYR A 299 MG MG A 503 1555 1555 2.08 CRYST1 154.020 154.020 118.510 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006493 0.003749 0.000000 0.00000 SCALE2 0.000000 0.007497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008438 0.00000