HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-SEP-20 7K3D TITLE THE STRUCTURE OF NTMT1 IN COMPLEX WITH COMPOUND DC1-13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-TERMINAL XAA-PRO-LYS N-METHYLTRANSFERASE 1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: ALPHA N-TERMINAL PROTEIN METHYLTRANSFERASE 1A, COMPND 5 METHYLTRANSFERASE-LIKE PROTEIN 11A,N-TERMINAL RCC1 METHYLTRANSFERASE, COMPND 6 X-PRO-LYS N-TERMINAL PROTEIN METHYLTRANSFERASE 1A,NTM1A; COMPND 7 EC: 2.1.1.244; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTMT1, C9ORF32, METTL11A, NRMT, NRMT1, AD-003; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, ENZYME, INHIBITOR COMPLEX, TRANSFERASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.CHEN,R.HUANG,N.NOINAJ REVDAT 2 18-OCT-23 7K3D 1 REMARK REVDAT 1 14-APR-21 7K3D 0 JRNL AUTH D.CHEN,G.DONG,Y.DENG,N.NOINAJ,R.HUANG JRNL TITL STRUCTURE-BASED DISCOVERY OF CELL-POTENT PEPTIDOMIMETIC JRNL TITL 2 INHIBITORS FOR PROTEIN N-TERMINAL METHYLTRANSFERASE 1. JRNL REF ACS MED.CHEM.LETT. V. 12 485 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 33738076 JRNL DOI 10.1021/ACSMEDCHEMLETT.1C00012 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 19700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1700 - 5.6400 0.82 1284 137 0.2249 0.2673 REMARK 3 2 5.6400 - 4.4800 0.85 1265 139 0.1702 0.2225 REMARK 3 3 4.4800 - 3.9100 0.84 1217 130 0.0000 0.1589 REMARK 3 4 3.9100 - 3.5600 0.83 1200 132 0.1736 0.2460 REMARK 3 5 3.5600 - 3.3000 0.85 1229 148 0.2010 0.2578 REMARK 3 6 3.3000 - 3.1100 0.85 1229 125 0.2135 0.2708 REMARK 3 7 3.1100 - 2.9500 0.88 1259 143 0.2260 0.2790 REMARK 3 8 2.9500 - 2.8200 0.90 1263 149 0.2249 0.2968 REMARK 3 9 2.8200 - 2.7100 0.90 1268 157 0.2233 0.3098 REMARK 3 10 2.7100 - 2.6200 0.91 1305 130 0.2245 0.2962 REMARK 3 11 2.6200 - 2.5400 0.93 1316 146 0.2302 0.2746 REMARK 3 12 2.5400 - 2.4700 0.93 1307 152 0.2372 0.3244 REMARK 3 13 2.4700 - 2.4000 0.93 1299 141 0.2319 0.3290 REMARK 3 14 2.4000 - 2.3400 0.90 1286 144 0.2364 0.2853 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 38 OR RESID REMARK 3 40 THROUGH 62 OR RESID 64 THROUGH 84 OR REMARK 3 (RESID 85 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 86 THROUGH 100 OR RESID 102 THROUGH REMARK 3 124 OR RESID 126 THROUGH 170 OR (RESID REMARK 3 171 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 172 THROUGH REMARK 3 177 OR RESID 179 THROUGH 191 OR RESID 193 REMARK 3 THROUGH 194 OR RESID 196 THROUGH 199 OR REMARK 3 RESID 201 THROUGH 223 OR RESID 301 REMARK 3 THROUGH 401)) REMARK 3 SELECTION : (CHAIN B AND (RESID 3 THROUGH 6 OR (RESID REMARK 3 7 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 8 THROUGH REMARK 3 14 OR (RESID 15 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG OR REMARK 3 NAME CD OR NAME CE )) OR RESID 16 THROUGH REMARK 3 20 OR (RESID 21 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG OR REMARK 3 NAME CD OR NAME CE )) OR RESID 22 THROUGH REMARK 3 38 OR RESID 40 THROUGH 62 OR RESID 64 REMARK 3 THROUGH 76 OR (RESID 77 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD OR NAME CE )) OR RESID REMARK 3 78 THROUGH 100 OR RESID 102 THROUGH 124 REMARK 3 OR RESID 126 THROUGH 177 OR RESID 179 REMARK 3 THROUGH 191 OR RESID 193 THROUGH 194 OR REMARK 3 RESID 196 THROUGH 199 OR RESID 201 REMARK 3 THROUGH 223 OR RESID 301 THROUGH 401)) REMARK 3 ATOM PAIRS NUMBER : 2022 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.23700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DTN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M AMMONIUM SULFATE; 0.1 M MES PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.17300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.83100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.17300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.83100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 GLY B -5 REMARK 465 LEU B -4 REMARK 465 VAL B -3 REMARK 465 PRO B -2 REMARK 465 ARG B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 THR B 2 REMARK 465 MET A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 LEU A -4 REMARK 465 VAL A -3 REMARK 465 PRO A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 85 CD NE CZ NH1 NH2 REMARK 470 LYS B 101 CD CE NZ REMARK 470 GLN B 171 CG CD OE1 NE2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 LYS A 15 NZ REMARK 470 LYS A 21 NZ REMARK 470 LYS A 77 NZ REMARK 470 LYS A 101 CD CE NZ REMARK 470 ASP A 178 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 69 N SAH A 301 1.30 REMARK 500 O HOH A 487 O HOH A 498 1.90 REMARK 500 N SER A 3 O HOH A 401 1.94 REMARK 500 O HOH B 481 O HOH B 498 1.94 REMARK 500 O HOH A 446 O HOH A 496 2.00 REMARK 500 O HOH A 441 O HOH A 477 2.01 REMARK 500 O GLY B 29 O HOH B 401 2.08 REMARK 500 NE2 GLN A 144 O HOH A 402 2.09 REMARK 500 OG SER B 63 O HOH B 402 2.09 REMARK 500 OD2 ASP A 67 O HOH A 403 2.09 REMARK 500 O HOH A 403 O HOH A 462 2.10 REMARK 500 OG1 THR B 123 O HOH B 403 2.11 REMARK 500 O SAH A 301 O HOH A 404 2.11 REMARK 500 O LEU A 104 O HOH A 405 2.11 REMARK 500 OD2 ASP A 121 O HOH A 406 2.12 REMARK 500 O LEU A 157 O HOH A 407 2.13 REMARK 500 NH1 ARG B 191 OD1 ASP A 188 2.13 REMARK 500 O HOH A 452 O HOH A 479 2.14 REMARK 500 NH2 ARG A 74 O HOH A 404 2.16 REMARK 500 OE1 GLN B 144 O HOH B 404 2.19 REMARK 500 O HOH B 479 O HOH B 486 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 498 O HOH A 503 4545 1.89 REMARK 500 O HOH B 481 O HOH A 503 4545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 58 76.23 -104.23 REMARK 500 SER B 181 62.02 63.22 REMARK 500 GLU A 55 -63.66 -93.30 REMARK 500 SER A 181 63.09 62.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VWP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VWP A 302 DBREF 7K3D B 2 223 UNP Q9BV86 NTM1A_HUMAN 2 223 DBREF 7K3D A 2 223 UNP Q9BV86 NTM1A_HUMAN 2 223 SEQADV 7K3D MET B -17 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D GLY B -16 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER B -15 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER B -14 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS B -13 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS B -12 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS B -11 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS B -10 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS B -9 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS B -8 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER B -7 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER B -6 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D GLY B -5 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D LEU B -4 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D VAL B -3 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D PRO B -2 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D ARG B -1 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D GLY B 0 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER B 1 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D MET A -17 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D GLY A -16 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER A -15 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER A -14 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS A -13 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS A -12 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS A -11 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS A -10 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS A -9 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D HIS A -8 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER A -7 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER A -6 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D GLY A -5 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D LEU A -4 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D VAL A -3 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D PRO A -2 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D ARG A -1 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D GLY A 0 UNP Q9BV86 EXPRESSION TAG SEQADV 7K3D SER A 1 UNP Q9BV86 EXPRESSION TAG SEQRES 1 B 241 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 241 LEU VAL PRO ARG GLY SER THR SER GLU VAL ILE GLU ASP SEQRES 3 B 241 GLU LYS GLN PHE TYR SER LYS ALA LYS THR TYR TRP LYS SEQRES 4 B 241 GLN ILE PRO PRO THR VAL ASP GLY MET LEU GLY GLY TYR SEQRES 5 B 241 GLY HIS ILE SER SER ILE ASP ILE ASN SER SER ARG LYS SEQRES 6 B 241 PHE LEU GLN ARG PHE LEU ARG GLU GLY PRO ASN LYS THR SEQRES 7 B 241 GLY THR SER CYS ALA LEU ASP CYS GLY ALA GLY ILE GLY SEQRES 8 B 241 ARG ILE THR LYS ARG LEU LEU LEU PRO LEU PHE ARG GLU SEQRES 9 B 241 VAL ASP MET VAL ASP ILE THR GLU ASP PHE LEU VAL GLN SEQRES 10 B 241 ALA LYS THR TYR LEU GLY GLU GLU GLY LYS ARG VAL ARG SEQRES 11 B 241 ASN TYR PHE CYS CYS GLY LEU GLN ASP PHE THR PRO GLU SEQRES 12 B 241 PRO ASP SER TYR ASP VAL ILE TRP ILE GLN TRP VAL ILE SEQRES 13 B 241 GLY HIS LEU THR ASP GLN HIS LEU ALA GLU PHE LEU ARG SEQRES 14 B 241 ARG CYS LYS GLY SER LEU ARG PRO ASN GLY ILE ILE VAL SEQRES 15 B 241 ILE LYS ASP ASN MET ALA GLN GLU GLY VAL ILE LEU ASP SEQRES 16 B 241 ASP VAL ASP SER SER VAL CYS ARG ASP LEU ASP VAL VAL SEQRES 17 B 241 ARG ARG ILE ILE CYS SER ALA GLY LEU SER LEU LEU ALA SEQRES 18 B 241 GLU GLU ARG GLN GLU ASN LEU PRO ASP GLU ILE TYR HIS SEQRES 19 B 241 VAL TYR SER PHE ALA LEU ARG SEQRES 1 A 241 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 241 LEU VAL PRO ARG GLY SER THR SER GLU VAL ILE GLU ASP SEQRES 3 A 241 GLU LYS GLN PHE TYR SER LYS ALA LYS THR TYR TRP LYS SEQRES 4 A 241 GLN ILE PRO PRO THR VAL ASP GLY MET LEU GLY GLY TYR SEQRES 5 A 241 GLY HIS ILE SER SER ILE ASP ILE ASN SER SER ARG LYS SEQRES 6 A 241 PHE LEU GLN ARG PHE LEU ARG GLU GLY PRO ASN LYS THR SEQRES 7 A 241 GLY THR SER CYS ALA LEU ASP CYS GLY ALA GLY ILE GLY SEQRES 8 A 241 ARG ILE THR LYS ARG LEU LEU LEU PRO LEU PHE ARG GLU SEQRES 9 A 241 VAL ASP MET VAL ASP ILE THR GLU ASP PHE LEU VAL GLN SEQRES 10 A 241 ALA LYS THR TYR LEU GLY GLU GLU GLY LYS ARG VAL ARG SEQRES 11 A 241 ASN TYR PHE CYS CYS GLY LEU GLN ASP PHE THR PRO GLU SEQRES 12 A 241 PRO ASP SER TYR ASP VAL ILE TRP ILE GLN TRP VAL ILE SEQRES 13 A 241 GLY HIS LEU THR ASP GLN HIS LEU ALA GLU PHE LEU ARG SEQRES 14 A 241 ARG CYS LYS GLY SER LEU ARG PRO ASN GLY ILE ILE VAL SEQRES 15 A 241 ILE LYS ASP ASN MET ALA GLN GLU GLY VAL ILE LEU ASP SEQRES 16 A 241 ASP VAL ASP SER SER VAL CYS ARG ASP LEU ASP VAL VAL SEQRES 17 A 241 ARG ARG ILE ILE CYS SER ALA GLY LEU SER LEU LEU ALA SEQRES 18 A 241 GLU GLU ARG GLN GLU ASN LEU PRO ASP GLU ILE TYR HIS SEQRES 19 A 241 VAL TYR SER PHE ALA LEU ARG HET SAH B 301 26 HET VWP B 302 41 HET SAH A 301 26 HET VWP A 302 41 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM VWP N~2~-{(2S)-1-[(NAPHTHALEN-1-YL)ACETYL]-2,5-DIHYDRO-1H- HETNAM 2 VWP PYRROLE-2-CARBONYL}-L-LYSYL-L-ARGININAMIDE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 VWP 2(C29 H40 N8 O4) FORMUL 7 HOH *206(H2 O) HELIX 1 AA1 ASP B 8 GLN B 22 1 15 HELIX 2 AA2 THR B 26 LEU B 31 1 6 HELIX 3 AA3 TYR B 34 HIS B 36 5 3 HELIX 4 AA4 ILE B 37 GLU B 55 1 19 HELIX 5 AA5 GLY B 73 LEU B 79 1 7 HELIX 6 AA6 THR B 93 LEU B 104 1 12 HELIX 7 AA7 GLU B 106 LYS B 109 5 4 HELIX 8 AA8 GLY B 118 PHE B 122 5 5 HELIX 9 AA9 VAL B 137 LEU B 141 5 5 HELIX 10 AB1 THR B 142 SER B 156 1 15 HELIX 11 AB2 LEU B 187 ALA B 197 1 11 HELIX 12 AB3 ASP A 8 GLN A 22 1 15 HELIX 13 AB4 THR A 26 LEU A 31 1 6 HELIX 14 AB5 TYR A 34 HIS A 36 5 3 HELIX 15 AB6 ILE A 37 GLU A 55 1 19 HELIX 16 AB7 GLY A 73 LEU A 79 1 7 HELIX 17 AB8 THR A 93 GLY A 105 1 13 HELIX 18 AB9 GLU A 106 LYS A 109 5 4 HELIX 19 AC1 GLY A 118 PHE A 122 5 5 HELIX 20 AC2 VAL A 137 LEU A 141 5 5 HELIX 21 AC3 THR A 142 SER A 156 1 15 HELIX 22 AC4 LEU A 187 ALA A 197 1 11 SHEET 1 AA114 VAL B 111 CYS B 116 0 SHEET 2 AA114 GLU B 86 ASP B 91 1 N MET B 89 O ASN B 113 SHEET 3 AA114 CYS B 64 CYS B 68 1 N ASP B 67 O ASP B 88 SHEET 4 AA114 TYR B 129 GLN B 135 1 O TRP B 133 N LEU B 66 SHEET 5 AA114 LEU B 157 ALA B 170 1 O ARG B 158 N TYR B 129 SHEET 6 AA114 HIS B 216 ARG B 223 -1 O PHE B 220 N ILE B 165 SHEET 7 AA114 SER B 200 ARG B 206 -1 N SER B 200 O ARG B 223 SHEET 8 AA114 SER A 200 ARG A 206 -1 O ARG A 206 N LEU B 202 SHEET 9 AA114 HIS A 216 ARG A 223 -1 O ARG A 223 N SER A 200 SHEET 10 AA114 LEU A 157 ALA A 170 -1 N ILE A 165 O PHE A 220 SHEET 11 AA114 TYR A 129 GLN A 135 1 N ILE A 134 O VAL A 164 SHEET 12 AA114 CYS A 64 CYS A 68 1 N CYS A 64 O ASP A 130 SHEET 13 AA114 GLU A 86 ASP A 91 1 O ASP A 88 N ASP A 67 SHEET 14 AA114 VAL A 111 CYS A 116 1 O PHE A 115 N ASP A 91 SHEET 1 AA210 VAL B 174 ASP B 177 0 SHEET 2 AA210 SER B 182 ASP B 186 -1 O SER B 182 N ASP B 177 SHEET 3 AA210 LEU B 157 ALA B 170 1 N ALA B 170 O ARG B 185 SHEET 4 AA210 HIS B 216 ARG B 223 -1 O PHE B 220 N ILE B 165 SHEET 5 AA210 SER B 200 ARG B 206 -1 N SER B 200 O ARG B 223 SHEET 6 AA210 SER A 200 ARG A 206 -1 O ARG A 206 N LEU B 202 SHEET 7 AA210 HIS A 216 ARG A 223 -1 O ARG A 223 N SER A 200 SHEET 8 AA210 LEU A 157 ALA A 170 -1 N ILE A 165 O PHE A 220 SHEET 9 AA210 SER A 182 ASP A 186 1 O ARG A 185 N ALA A 170 SHEET 10 AA210 VAL A 174 ASP A 177 -1 N ASP A 177 O SER A 182 CISPEP 1 GLY B 56 PRO B 57 0 12.38 CISPEP 2 GLY A 56 PRO A 57 0 13.61 SITE 1 AC1 20 TRP B 20 MET B 30 GLY B 69 GLY B 71 SITE 2 AC1 20 ARG B 74 ILE B 75 ASP B 91 ILE B 92 SITE 3 AC1 20 THR B 93 PHE B 96 GLY B 118 LEU B 119 SITE 4 AC1 20 GLN B 120 GLN B 135 TRP B 136 VAL B 137 SITE 5 AC1 20 HIS B 140 HOH B 405 HOH B 410 HOH B 423 SITE 1 AC2 17 TRP B 20 MET B 30 LEU B 31 TYR B 34 SITE 2 AC2 17 TRP B 136 HIS B 140 ASN B 168 ASP B 177 SITE 3 AC2 17 ASP B 180 SER B 182 GLU B 213 ILE B 214 SITE 4 AC2 17 TYR B 215 HOH B 440 HOH B 454 HOH B 461 SITE 5 AC2 17 HOH B 472 SITE 1 AC3 22 TRP A 20 MET A 30 GLY A 69 ALA A 70 SITE 2 AC3 22 GLY A 71 ARG A 74 ILE A 75 ASP A 91 SITE 3 AC3 22 ILE A 92 THR A 93 PHE A 96 GLY A 118 SITE 4 AC3 22 LEU A 119 GLN A 120 TRP A 136 VAL A 137 SITE 5 AC3 22 HIS A 140 LEU A 141 HOH A 404 HOH A 408 SITE 6 AC3 22 HOH A 417 HOH A 430 SITE 1 AC4 14 TRP A 20 LEU A 31 GLY A 32 TYR A 34 SITE 2 AC4 14 TRP A 136 HIS A 140 ASN A 168 ASP A 177 SITE 3 AC4 14 ASP A 180 SER A 182 GLU A 213 ILE A 214 SITE 4 AC4 14 TYR A 215 HOH A 431 CRYST1 74.860 81.662 84.346 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011856 0.00000