data_7K3G # _entry.id 7K3G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7K3G pdb_00007k3g 10.2210/pdb7k3g/pdb WWPDB D_1000251802 ? ? BMRB 30795 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'SARS-CoV-2 Envelope Protein Transmembrane Domain: Pentameric Structure Determined by Solid-State NMR' _pdbx_database_related.db_id 30795 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7K3G _pdbx_database_status.recvd_initial_deposition_date 2020-09-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mandala, V.S.' 1 0000-0002-6358-0642 'Hong, M.' 2 0000-0001-5255-5858 'McKay, M.J.' 3 0000-0002-3079-9189 'Shcherbakov, A.S.' 4 0000-0002-5728-7175 'Dregni, A.J.' 5 0000-0003-3422-4734 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary Nat.Struct.Mol.Biol. ? ? 1545-9985 ? ? 27 ? 1202 1208 'Structure and drug binding of the SARS-CoV-2 envelope protein transmembrane domain in lipid bilayers.' 2020 ? 10.1038/s41594-020-00536-8 33177698 ? ? ? ? ? ? ? ? US ? ? 1 'Res Sq' ? ? 2693-5015 ? ? ? ? ? ? 'Structure and Drug Binding of the SARS-CoV-2 Envelope Protein in Phospholipid Bilayers.' 2020 ? 10.21203/rs.3.rs-77124/v1 32995764 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandala, V.S.' 1 ? primary 'McKay, M.J.' 2 ? primary 'Shcherbakov, A.A.' 3 ? primary 'Dregni, A.J.' 4 ? primary 'Kolocouris, A.' 5 ? primary 'Hong, M.' 6 ? 1 'Hong, M.' 7 0000-0001-5255-5858 1 'Mandala, V.' 8 0000-0002-6358-0642 1 'McKay, M.' 9 ? 1 'Shcherbakov, A.' 10 0000-0002-5728-7175 1 'Dregni, A.' 11 ? 1 'Kolocouris, A.' 12 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Envelope small membrane protein' _entity.formula_weight 3362.115 _entity.pdbx_number_of_molecules 5 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'sM protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ETGTLIVNSVLLFLAFVVFLLVTLAILTALR _entity_poly.pdbx_seq_one_letter_code_can ETGTLIVNSVLLFLAFVVFLLVTLAILTALR _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 GLY n 1 4 THR n 1 5 LEU n 1 6 ILE n 1 7 VAL n 1 8 ASN n 1 9 SER n 1 10 VAL n 1 11 LEU n 1 12 LEU n 1 13 PHE n 1 14 LEU n 1 15 ALA n 1 16 PHE n 1 17 VAL n 1 18 VAL n 1 19 PHE n 1 20 LEU n 1 21 LEU n 1 22 VAL n 1 23 THR n 1 24 LEU n 1 25 ALA n 1 26 ILE n 1 27 LEU n 1 28 THR n 1 29 ALA n 1 30 LEU n 1 31 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 31 _entity_src_gen.gene_src_common_name 2019-nCoV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'E, 4' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VEMP_SARS2 _struct_ref.pdbx_db_accession P0DTC4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ETGTLIVNSVLLFLAFVVFLLVTLAILTALR _struct_ref.pdbx_align_begin 8 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7K3G A 1 ? 31 ? P0DTC4 8 ? 38 ? 8 38 2 1 7K3G B 1 ? 31 ? P0DTC4 8 ? 38 ? 8 38 3 1 7K3G C 1 ? 31 ? P0DTC4 8 ? 38 ? 8 38 4 1 7K3G D 1 ? 31 ? P0DTC4 8 ? 38 ? 8 38 5 1 7K3G E 1 ? 31 ? P0DTC4 8 ? 38 ? 8 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D CC CORD' 1 anisotropic 2 1 1 '2D NCA/NCO SPEC-CP' 1 anisotropic 3 1 1 '3D NCACX/NCOCX/CONCA' 1 anisotropic 4 1 2 '1D/2D 13C-19F REDOR' 3 anisotropic 5 1 2 '2D 13C-19F SPEC-CP' 3 anisotropic 6 1 3 '2D NHHC' 2 anisotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label pH75_ERGIC _pdbx_nmr_exptl_sample_conditions.pH_err 0.2 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.1 mg/uL [U-13C; U-15N] SARS-CoV-2 Envelope Protein Transmembrane Domain, 0.23 mg/uL POPC, 0.1 mg/uL POPE, 0.08 mg/uL bovine PI, 0.04 mg/uL POPS, 0.04 mg/uL Cholesterol, aqueous buffer ; 'aqueous buffer' 'U-13C15N, ERGIC' membrane ? 2 ;0.1 mg/uL [U-13C; U-15N] SARS-CoV-2 Envelope Protein Transmembrane Domain, 0.1 mg/uL [4-19F-Phe] fluoro SARS-CoV-2 Envelope Protein Transmembrane Domain, 0.23 mg/uL POPC, 0.1 mg/uL POPE, 0.08 mg/uL bovine PI, 0.04 mg/uL POPS, 0.04 mg/uL Cholesterol, aqueous buffer ; 'aqueous buffer' '1:1 19F-Phe:U-13C15N, ERGIC' membrane ? 3 ;0.1 mg/uL [U-15N] 15N SARS-CoV-2 Envelope Protein Transmembrane Domain, 0.1 mg/uL [U-13C] 13C SARS-CoV-2 Envelope Protein Transmembrane Domain, 0.23 mg/uL POPC, 0.1 mg/uL POPE, 0.08 mg/uL bovine PI, 0.04 mg/uL POPS, 0.04 mg/uL Cholesterol, aqueous buffer ; 'aqueous buffer' '1:1 U-15N:U-13C, ERGIC' membrane ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE NEO' ? Bruker 900 ? 2 'AVANCE II' ? Bruker 800 ? 3 'AVANCE III HD' ? Bruker 60 ? # _pdbx_nmr_refine.entry_id 7K3G _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 7K3G _pdbx_nmr_ensemble.conformers_calculated_total_number 192 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7K3G _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' NMRFAM-SPARKY ? NMRFAM 2 processing TopSpin ? 'Bruker Biospin' 3 'structure calculation' 'X-PLOR NIH' 2.47 'Schwieters, Kuszewski, Tjandra and Clore' 4 refinement 'X-PLOR NIH' 2.47 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7K3G _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLID-STATE NMR' _exptl.method_details ? # _struct.entry_id 7K3G _struct.title 'SARS-CoV-2 Envelope Protein Transmembrane Domain: Pentameric Structure Determined by Solid-State NMR' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7K3G _struct_keywords.text 'Viroporin, Pentameric Ion Channel, Transmembrane Domain, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 3 ? LEU A 12 ? GLY A 10 LEU A 19 1 ? 10 HELX_P HELX_P2 AA2 LEU A 14 ? LEU A 30 ? LEU A 21 LEU A 37 1 ? 17 HELX_P HELX_P3 AA3 GLY B 3 ? LEU B 12 ? GLY B 10 LEU B 19 1 ? 10 HELX_P HELX_P4 AA4 LEU B 14 ? LEU B 30 ? LEU B 21 LEU B 37 1 ? 17 HELX_P HELX_P5 AA5 GLY C 3 ? LEU C 12 ? GLY C 10 LEU C 19 1 ? 10 HELX_P HELX_P6 AA6 LEU C 14 ? LEU C 30 ? LEU C 21 LEU C 37 1 ? 17 HELX_P HELX_P7 AA7 GLY D 3 ? LEU D 12 ? GLY D 10 LEU D 19 1 ? 10 HELX_P HELX_P8 AA8 LEU D 14 ? LEU D 30 ? LEU D 21 LEU D 37 1 ? 17 HELX_P HELX_P9 AA9 GLY E 3 ? LEU E 12 ? GLY E 10 LEU E 19 1 ? 10 HELX_P HELX_P10 AB1 LEU E 14 ? LEU E 30 ? LEU E 21 LEU E 37 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 7K3G _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 8 8 GLU GLU A . n A 1 2 THR 2 9 9 THR THR A . n A 1 3 GLY 3 10 10 GLY GLY A . n A 1 4 THR 4 11 11 THR THR A . n A 1 5 LEU 5 12 12 LEU LEU A . n A 1 6 ILE 6 13 13 ILE ILE A . n A 1 7 VAL 7 14 14 VAL VAL A . n A 1 8 ASN 8 15 15 ASN ASN A . n A 1 9 SER 9 16 16 SER SER A . n A 1 10 VAL 10 17 17 VAL VAL A . n A 1 11 LEU 11 18 18 LEU LEU A . n A 1 12 LEU 12 19 19 LEU LEU A . n A 1 13 PHE 13 20 20 PHE PHE A . n A 1 14 LEU 14 21 21 LEU LEU A . n A 1 15 ALA 15 22 22 ALA ALA A . n A 1 16 PHE 16 23 23 PHE PHE A . n A 1 17 VAL 17 24 24 VAL VAL A . n A 1 18 VAL 18 25 25 VAL VAL A . n A 1 19 PHE 19 26 26 PHE PHE A . n A 1 20 LEU 20 27 27 LEU LEU A . n A 1 21 LEU 21 28 28 LEU LEU A . n A 1 22 VAL 22 29 29 VAL VAL A . n A 1 23 THR 23 30 30 THR THR A . n A 1 24 LEU 24 31 31 LEU LEU A . n A 1 25 ALA 25 32 32 ALA ALA A . n A 1 26 ILE 26 33 33 ILE ILE A . n A 1 27 LEU 27 34 34 LEU LEU A . n A 1 28 THR 28 35 35 THR THR A . n A 1 29 ALA 29 36 36 ALA ALA A . n A 1 30 LEU 30 37 37 LEU LEU A . n A 1 31 ARG 31 38 38 ARG ARG A . n B 1 1 GLU 1 8 8 GLU GLU B . n B 1 2 THR 2 9 9 THR THR B . n B 1 3 GLY 3 10 10 GLY GLY B . n B 1 4 THR 4 11 11 THR THR B . n B 1 5 LEU 5 12 12 LEU LEU B . n B 1 6 ILE 6 13 13 ILE ILE B . n B 1 7 VAL 7 14 14 VAL VAL B . n B 1 8 ASN 8 15 15 ASN ASN B . n B 1 9 SER 9 16 16 SER SER B . n B 1 10 VAL 10 17 17 VAL VAL B . n B 1 11 LEU 11 18 18 LEU LEU B . n B 1 12 LEU 12 19 19 LEU LEU B . n B 1 13 PHE 13 20 20 PHE PHE B . n B 1 14 LEU 14 21 21 LEU LEU B . n B 1 15 ALA 15 22 22 ALA ALA B . n B 1 16 PHE 16 23 23 PHE PHE B . n B 1 17 VAL 17 24 24 VAL VAL B . n B 1 18 VAL 18 25 25 VAL VAL B . n B 1 19 PHE 19 26 26 PHE PHE B . n B 1 20 LEU 20 27 27 LEU LEU B . n B 1 21 LEU 21 28 28 LEU LEU B . n B 1 22 VAL 22 29 29 VAL VAL B . n B 1 23 THR 23 30 30 THR THR B . n B 1 24 LEU 24 31 31 LEU LEU B . n B 1 25 ALA 25 32 32 ALA ALA B . n B 1 26 ILE 26 33 33 ILE ILE B . n B 1 27 LEU 27 34 34 LEU LEU B . n B 1 28 THR 28 35 35 THR THR B . n B 1 29 ALA 29 36 36 ALA ALA B . n B 1 30 LEU 30 37 37 LEU LEU B . n B 1 31 ARG 31 38 38 ARG ARG B . n C 1 1 GLU 1 8 8 GLU GLU C . n C 1 2 THR 2 9 9 THR THR C . n C 1 3 GLY 3 10 10 GLY GLY C . n C 1 4 THR 4 11 11 THR THR C . n C 1 5 LEU 5 12 12 LEU LEU C . n C 1 6 ILE 6 13 13 ILE ILE C . n C 1 7 VAL 7 14 14 VAL VAL C . n C 1 8 ASN 8 15 15 ASN ASN C . n C 1 9 SER 9 16 16 SER SER C . n C 1 10 VAL 10 17 17 VAL VAL C . n C 1 11 LEU 11 18 18 LEU LEU C . n C 1 12 LEU 12 19 19 LEU LEU C . n C 1 13 PHE 13 20 20 PHE PHE C . n C 1 14 LEU 14 21 21 LEU LEU C . n C 1 15 ALA 15 22 22 ALA ALA C . n C 1 16 PHE 16 23 23 PHE PHE C . n C 1 17 VAL 17 24 24 VAL VAL C . n C 1 18 VAL 18 25 25 VAL VAL C . n C 1 19 PHE 19 26 26 PHE PHE C . n C 1 20 LEU 20 27 27 LEU LEU C . n C 1 21 LEU 21 28 28 LEU LEU C . n C 1 22 VAL 22 29 29 VAL VAL C . n C 1 23 THR 23 30 30 THR THR C . n C 1 24 LEU 24 31 31 LEU LEU C . n C 1 25 ALA 25 32 32 ALA ALA C . n C 1 26 ILE 26 33 33 ILE ILE C . n C 1 27 LEU 27 34 34 LEU LEU C . n C 1 28 THR 28 35 35 THR THR C . n C 1 29 ALA 29 36 36 ALA ALA C . n C 1 30 LEU 30 37 37 LEU LEU C . n C 1 31 ARG 31 38 38 ARG ARG C . n D 1 1 GLU 1 8 8 GLU GLU D . n D 1 2 THR 2 9 9 THR THR D . n D 1 3 GLY 3 10 10 GLY GLY D . n D 1 4 THR 4 11 11 THR THR D . n D 1 5 LEU 5 12 12 LEU LEU D . n D 1 6 ILE 6 13 13 ILE ILE D . n D 1 7 VAL 7 14 14 VAL VAL D . n D 1 8 ASN 8 15 15 ASN ASN D . n D 1 9 SER 9 16 16 SER SER D . n D 1 10 VAL 10 17 17 VAL VAL D . n D 1 11 LEU 11 18 18 LEU LEU D . n D 1 12 LEU 12 19 19 LEU LEU D . n D 1 13 PHE 13 20 20 PHE PHE D . n D 1 14 LEU 14 21 21 LEU LEU D . n D 1 15 ALA 15 22 22 ALA ALA D . n D 1 16 PHE 16 23 23 PHE PHE D . n D 1 17 VAL 17 24 24 VAL VAL D . n D 1 18 VAL 18 25 25 VAL VAL D . n D 1 19 PHE 19 26 26 PHE PHE D . n D 1 20 LEU 20 27 27 LEU LEU D . n D 1 21 LEU 21 28 28 LEU LEU D . n D 1 22 VAL 22 29 29 VAL VAL D . n D 1 23 THR 23 30 30 THR THR D . n D 1 24 LEU 24 31 31 LEU LEU D . n D 1 25 ALA 25 32 32 ALA ALA D . n D 1 26 ILE 26 33 33 ILE ILE D . n D 1 27 LEU 27 34 34 LEU LEU D . n D 1 28 THR 28 35 35 THR THR D . n D 1 29 ALA 29 36 36 ALA ALA D . n D 1 30 LEU 30 37 37 LEU LEU D . n D 1 31 ARG 31 38 38 ARG ARG D . n E 1 1 GLU 1 8 8 GLU GLU E . n E 1 2 THR 2 9 9 THR THR E . n E 1 3 GLY 3 10 10 GLY GLY E . n E 1 4 THR 4 11 11 THR THR E . n E 1 5 LEU 5 12 12 LEU LEU E . n E 1 6 ILE 6 13 13 ILE ILE E . n E 1 7 VAL 7 14 14 VAL VAL E . n E 1 8 ASN 8 15 15 ASN ASN E . n E 1 9 SER 9 16 16 SER SER E . n E 1 10 VAL 10 17 17 VAL VAL E . n E 1 11 LEU 11 18 18 LEU LEU E . n E 1 12 LEU 12 19 19 LEU LEU E . n E 1 13 PHE 13 20 20 PHE PHE E . n E 1 14 LEU 14 21 21 LEU LEU E . n E 1 15 ALA 15 22 22 ALA ALA E . n E 1 16 PHE 16 23 23 PHE PHE E . n E 1 17 VAL 17 24 24 VAL VAL E . n E 1 18 VAL 18 25 25 VAL VAL E . n E 1 19 PHE 19 26 26 PHE PHE E . n E 1 20 LEU 20 27 27 LEU LEU E . n E 1 21 LEU 21 28 28 LEU LEU E . n E 1 22 VAL 22 29 29 VAL VAL E . n E 1 23 THR 23 30 30 THR THR E . n E 1 24 LEU 24 31 31 LEU LEU E . n E 1 25 ALA 25 32 32 ALA ALA E . n E 1 26 ILE 26 33 33 ILE ILE E . n E 1 27 LEU 27 34 34 LEU LEU E . n E 1 28 THR 28 35 35 THR THR E . n E 1 29 ALA 29 36 36 ALA ALA E . n E 1 30 LEU 30 37 37 LEU LEU E . n E 1 31 ARG 31 38 38 ARG ARG E . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6330 ? 1 MORE -77 ? 1 'SSA (A^2)' 9660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-30 2 'Structure model' 2 0 2020-10-21 3 'Structure model' 2 1 2020-10-28 4 'Structure model' 2 2 2020-11-25 5 'Structure model' 2 3 2020-12-16 6 'Structure model' 2 4 2023-06-14 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' author 'Coordinate replacement' 'Polymer geometry' ;We have recalculated the slightly structures to obtain better agreement with known sidechain rotamers. The structural ensemble is overall very similar to before. ; # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Database references' 7 6 'Structure model' 'Database references' 8 6 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' pdbx_nmr_representative 3 2 'Structure model' pdbx_validate_torsion 4 2 'Structure model' struct_conf 5 3 'Structure model' citation 6 3 'Structure model' citation_author 7 4 'Structure model' citation 8 4 'Structure model' citation_author 9 5 'Structure model' citation 10 5 'Structure model' citation_author 11 6 'Structure model' database_2 12 6 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.Cartn_x' 2 2 'Structure model' '_atom_site.Cartn_y' 3 2 'Structure model' '_atom_site.Cartn_z' 4 2 'Structure model' '_atom_site.pdbx_formal_charge' 5 2 'Structure model' '_pdbx_nmr_representative.selection_criteria' 6 2 'Structure model' '_struct_conf.beg_auth_comp_id' 7 2 'Structure model' '_struct_conf.beg_auth_seq_id' 8 2 'Structure model' '_struct_conf.beg_label_comp_id' 9 2 'Structure model' '_struct_conf.beg_label_seq_id' 10 2 'Structure model' '_struct_conf.pdbx_PDB_helix_length' 11 3 'Structure model' '_citation.journal_abbrev' 12 3 'Structure model' '_citation.journal_id_CSD' 13 3 'Structure model' '_citation.journal_id_ISSN' 14 3 'Structure model' '_citation.pdbx_database_id_DOI' 15 3 'Structure model' '_citation.pdbx_database_id_PubMed' 16 3 'Structure model' '_citation.title' 17 3 'Structure model' '_citation.year' 18 5 'Structure model' '_citation.country' 19 5 'Structure model' '_citation.journal_volume' 20 5 'Structure model' '_citation.page_first' 21 5 'Structure model' '_citation.page_last' 22 5 'Structure model' '_citation_author.identifier_ORCID' 23 6 'Structure model' '_database_2.pdbx_DOI' 24 6 'Structure model' '_database_2.pdbx_database_accession' 25 6 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'SARS-CoV-2 Envelope Protein Transmembrane Domain' 0.1 ? mg/uL '[U-13C; U-15N]' 1 POPC 0.23 ? mg/uL 'natural abundance' 1 POPE 0.1 ? mg/uL 'natural abundance' 1 'bovine PI' 0.08 ? mg/uL 'natural abundance' 1 POPS 0.04 ? mg/uL 'natural abundance' 1 Cholesterol 0.04 ? mg/uL 'natural abundance' 2 'SARS-CoV-2 Envelope Protein Transmembrane Domain' 0.1 ? mg/uL '[U-13C; U-15N]' 2 'fluoro SARS-CoV-2 Envelope Protein Transmembrane Domain' 0.1 ? mg/uL '[4-19F-Phe]' 2 POPC 0.23 ? mg/uL 'natural abundance' 2 POPE 0.1 ? mg/uL 'natural abundance' 2 'bovine PI' 0.08 ? mg/uL 'natural abundance' 2 POPS 0.04 ? mg/uL 'natural abundance' 2 Cholesterol 0.04 ? mg/uL 'natural abundance' 3 '15N SARS-CoV-2 Envelope Protein Transmembrane Domain' 0.1 ? mg/uL '[U-15N]' 3 '13C SARS-CoV-2 Envelope Protein Transmembrane Domain' 0.1 ? mg/uL '[U-13C]' 3 POPC 0.23 ? mg/uL 'natural abundance' 3 POPE 0.1 ? mg/uL 'natural abundance' 3 'bovine PI' 0.08 ? mg/uL 'natural abundance' 3 POPS 0.04 ? mg/uL 'natural abundance' 3 Cholesterol 0.04 ? mg/uL 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 37 ? ? 63.73 -81.44 2 1 LEU B 37 ? ? 63.73 -81.49 3 1 LEU C 37 ? ? 63.65 -81.37 4 1 LEU D 37 ? ? 63.85 -81.58 5 1 LEU E 37 ? ? 63.77 -81.54 6 2 LEU A 21 ? ? -49.12 -18.60 7 2 LEU A 37 ? ? 66.61 -171.09 8 2 LEU B 21 ? ? -49.54 -18.51 9 2 LEU B 37 ? ? 66.60 -171.09 10 2 LEU C 21 ? ? -49.59 -18.46 11 2 LEU C 37 ? ? 66.61 -171.17 12 2 LEU D 21 ? ? -49.08 -18.70 13 2 LEU D 37 ? ? 66.62 -171.12 14 2 LEU E 21 ? ? -47.43 -19.62 15 2 LEU E 37 ? ? 66.58 -171.12 16 3 THR A 9 ? ? -136.23 -42.37 17 3 LEU A 37 ? ? 72.67 -70.75 18 3 THR B 9 ? ? -136.21 -42.50 19 3 LEU B 37 ? ? 72.64 -70.74 20 3 THR C 9 ? ? -136.29 -42.30 21 3 LEU C 37 ? ? 72.60 -70.66 22 3 THR D 9 ? ? -136.25 -42.44 23 3 LEU D 37 ? ? 72.67 -70.65 24 3 THR E 9 ? ? -136.28 -42.44 25 3 LEU E 37 ? ? 72.61 -70.74 26 4 LEU A 37 ? ? 64.23 114.40 27 4 LEU B 37 ? ? 64.13 114.35 28 4 LEU C 37 ? ? 64.12 114.37 29 4 LEU D 37 ? ? 64.13 114.33 30 4 LEU E 37 ? ? 64.10 114.38 31 5 LEU A 37 ? ? 62.74 64.44 32 5 LEU B 37 ? ? 62.65 64.49 33 5 LEU C 37 ? ? 62.69 64.54 34 5 LEU D 37 ? ? 62.66 64.48 35 5 LEU E 37 ? ? 62.78 64.36 36 6 THR A 9 ? ? -160.54 30.06 37 6 LEU A 21 ? ? -49.70 -19.15 38 6 THR B 9 ? ? -160.50 30.10 39 6 LEU B 21 ? ? -49.95 -18.97 40 6 THR C 9 ? ? -160.52 30.03 41 6 LEU C 21 ? ? -49.88 -19.02 42 6 THR D 9 ? ? -160.54 30.13 43 6 LEU D 21 ? ? -49.75 -19.02 44 6 THR E 9 ? ? -160.58 30.12 45 6 LEU E 21 ? ? -49.91 -19.19 46 7 LEU A 37 ? ? 62.55 150.91 47 7 LEU B 37 ? ? 62.50 150.89 48 7 LEU C 37 ? ? 62.53 151.05 49 7 LEU D 37 ? ? 62.54 151.06 50 7 LEU E 37 ? ? 62.40 151.25 51 8 THR A 9 ? ? 58.34 10.59 52 8 LEU A 37 ? ? 59.49 104.33 53 8 THR B 9 ? ? 58.35 10.55 54 8 LEU B 37 ? ? 59.52 104.33 55 8 THR C 9 ? ? 58.28 10.67 56 8 LEU C 37 ? ? 59.58 104.21 57 8 THR D 9 ? ? 58.31 10.54 58 8 LEU D 37 ? ? 59.53 104.38 59 8 THR E 9 ? ? 58.31 10.44 60 8 LEU E 21 ? ? -48.12 -18.61 61 8 LEU E 37 ? ? 59.54 104.31 62 10 LEU A 37 ? ? 62.58 76.02 63 10 LEU B 37 ? ? 62.69 76.04 64 10 LEU C 37 ? ? 62.58 76.11 65 10 LEU D 37 ? ? 62.59 76.22 66 10 LEU E 37 ? ? 62.56 76.14 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM088204 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'literature evidence using analytical ultracentrifugation and gel electrophoresis indicate pentamers are the most likely oligomer' #