HEADER TOXIN 22-SEP-20 7K7D TITLE CRYSTAL STRUCTURE OF DIPHTHERIA TOXIN FROM CRYSTALS OBTAINED AT PH 6.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHTHERIA TOXIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FULL LENGTH; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 1717; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL23DELYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DIPTHERIA TOXIN, PH DEPENDENT CONFORMATIONAL CHANGES, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,M.M.KASHIPATHY,K.P.BATTAILE,M.V.RODNIN,A.S.LADOKHIN REVDAT 3 23-OCT-24 7K7D 1 REMARK REVDAT 2 18-OCT-23 7K7D 1 REMARK REVDAT 1 18-NOV-20 7K7D 0 JRNL AUTH M.V.RODNIN,M.M.KASHIPATHY,A.KYRYCHENKO,K.P.BATTAILE, JRNL AUTH 2 S.LOVELL,A.S.LADOKHIN JRNL TITL STRUCTURE OF THE DIPHTHERIA TOXIN AT ACIDIC PH: IMPLICATIONS JRNL TITL 2 FOR THE CONFORMATIONAL SWITCHING OF THE TRANSLOCATION JRNL TITL 3 DOMAIN. JRNL REF TOXINS V. 12 2020 JRNL REFN ESSN 2072-6651 JRNL PMID 33171806 JRNL DOI 10.3390/TOXINS12110704 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14RC3_3208 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 67310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 3175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4270 - 5.9639 0.97 2793 127 0.1897 0.2141 REMARK 3 2 5.9639 - 4.7370 0.98 2784 166 0.1721 0.2148 REMARK 3 3 4.7370 - 4.1392 0.97 2772 143 0.1563 0.1986 REMARK 3 4 4.1392 - 3.7612 0.96 2775 128 0.1763 0.2350 REMARK 3 5 3.7612 - 3.4918 0.97 2730 118 0.2037 0.2468 REMARK 3 6 3.4918 - 3.2861 0.98 2886 121 0.2252 0.2799 REMARK 3 7 3.2861 - 3.1216 0.98 2825 106 0.2316 0.3003 REMARK 3 8 3.1216 - 2.9858 0.98 2862 108 0.2340 0.2753 REMARK 3 9 2.9858 - 2.8709 0.98 2795 118 0.2372 0.3169 REMARK 3 10 2.8709 - 2.7719 0.98 2788 137 0.2369 0.2692 REMARK 3 11 2.7719 - 2.6852 0.98 2782 151 0.2426 0.3062 REMARK 3 12 2.6852 - 2.6085 0.97 2801 148 0.2448 0.2975 REMARK 3 13 2.6085 - 2.5398 0.98 2762 172 0.2359 0.3053 REMARK 3 14 2.5398 - 2.4779 0.98 2785 150 0.2541 0.2781 REMARK 3 15 2.4779 - 2.4216 0.98 2812 135 0.2528 0.3083 REMARK 3 16 2.4216 - 2.3700 0.97 2771 148 0.2544 0.2972 REMARK 3 17 2.3700 - 2.3226 0.97 2759 139 0.2517 0.3028 REMARK 3 18 2.3226 - 2.2788 0.98 2819 137 0.2568 0.3400 REMARK 3 19 2.2788 - 2.2381 0.97 2735 172 0.2729 0.3171 REMARK 3 20 2.2381 - 2.2002 0.97 2845 124 0.2728 0.3671 REMARK 3 21 2.2002 - 2.1647 0.97 2706 140 0.2770 0.3334 REMARK 3 22 2.1647 - 2.1314 0.97 2821 144 0.2836 0.3105 REMARK 3 23 2.1314 - 2.1001 0.97 2727 143 0.2973 0.3488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7645 REMARK 3 ANGLE : 0.941 10399 REMARK 3 CHIRALITY : 0.054 1209 REMARK 3 PLANARITY : 0.007 1338 REMARK 3 DIHEDRAL : 12.686 4543 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DDT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 10000, 0.1 M MAGNESIUM REMARK 280 ACETATE, 0.1 M MES, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 SER A 40 REMARK 465 GLY A 41 REMARK 465 THR A 42 REMARK 465 GLN A 43 REMARK 465 GLY A 44 REMARK 465 ASN A 45 REMARK 465 TYR A 46 REMARK 465 ASP A 47 REMARK 465 GLY A 188 REMARK 465 ASN A 189 REMARK 465 ARG A 190 REMARK 465 VAL A 191 REMARK 465 ARG A 192 REMARK 465 ARG A 193 REMARK 465 SER A 194 REMARK 465 VAL A 195 REMARK 465 GLY A 196 REMARK 465 SER A 197 REMARK 465 SER A 198 REMARK 465 LEU A 199 REMARK 465 ILE A 353 REMARK 465 THR A 517 REMARK 465 VAL A 518 REMARK 465 ASP A 519 REMARK 465 HIS A 520 REMARK 465 THR A 521 REMARK 465 ALA A 537 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 LYS B 39 REMARK 465 SER B 40 REMARK 465 GLY B 41 REMARK 465 THR B 42 REMARK 465 GLN B 43 REMARK 465 GLY B 44 REMARK 465 ASN B 45 REMARK 465 TYR B 46 REMARK 465 ASP B 47 REMARK 465 GLY B 188 REMARK 465 ASN B 189 REMARK 465 ARG B 190 REMARK 465 VAL B 191 REMARK 465 ARG B 192 REMARK 465 ARG B 193 REMARK 465 SER B 194 REMARK 465 VAL B 195 REMARK 465 GLY B 196 REMARK 465 SER B 197 REMARK 465 SER B 198 REMARK 465 LEU B 199 REMARK 465 ASP B 352 REMARK 465 ILE B 353 REMARK 465 THR B 517 REMARK 465 VAL B 518 REMARK 465 ASP B 519 REMARK 465 HIS B 520 REMARK 465 THR B 521 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 GLN A 36 CG CD OE1 NE2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 GLU A 100 CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 121 CD OE1 OE2 REMARK 470 GLU A 122 CD OE1 OE2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 148 CE NZ REMARK 470 GLU A 154 CD OE1 OE2 REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 214 CD CE NZ REMARK 470 LYS A 221 CD CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 HIS A 223 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 ASN A 228 CG OD1 ND2 REMARK 470 LYS A 229 CE NZ REMARK 470 MET A 230 CG SD CE REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 ASN A 235 CG OD1 ND2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 GLN A 252 CD OE1 NE2 REMARK 470 GLU A 256 CD OE1 OE2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 LYS A 440 CD CE NZ REMARK 470 LYS A 447 CE NZ REMARK 470 LYS A 456 CE NZ REMARK 470 ARG A 458 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 460 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 497 CG CD OE1 OE2 REMARK 470 ASN A 502 CG OD1 ND2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLN B 36 CG CD OE1 NE2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 ASP B 48 CG OD1 OD2 REMARK 470 GLU B 70 CD OE1 OE2 REMARK 470 LYS B 95 CD CE NZ REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LEU B 110 CG CD1 CD2 REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 LYS B 148 CE NZ REMARK 470 ARG B 170 NE CZ NH1 NH2 REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 ASN B 228 CG OD1 ND2 REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 GLU B 241 CG CD OE1 OE2 REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 GLN B 245 CG CD OE1 NE2 REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 GLU B 259 CD OE1 OE2 REMARK 470 LYS B 264 CD CE NZ REMARK 470 ASP B 295 CG OD1 OD2 REMARK 470 TYR B 358 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 458 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 460 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 462 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 522 CE NZ REMARK 470 GLU B 532 CD OE1 OE2 REMARK 470 MET B 536 SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 113.39 -23.60 REMARK 500 LEU A 110 8.79 -68.40 REMARK 500 THR A 111 -61.70 -103.76 REMARK 500 ALA A 141 159.40 178.92 REMARK 500 CYS A 201 123.25 -25.49 REMARK 500 GLU A 222 48.97 -96.33 REMARK 500 ASN A 235 29.90 34.98 REMARK 500 THR A 237 101.21 -58.24 REMARK 500 VAL A 347 44.26 -141.54 REMARK 500 TYR A 358 -81.19 -115.62 REMARK 500 LYS A 385 -132.29 49.43 REMARK 500 ASN A 424 -93.17 -147.09 REMARK 500 PRO A 438 108.56 -38.97 REMARK 500 ASP B 68 113.27 -19.60 REMARK 500 LEU B 106 31.06 -89.60 REMARK 500 CYS B 201 108.03 14.16 REMARK 500 HIS B 223 152.74 -36.64 REMARK 500 ASN B 235 34.30 39.15 REMARK 500 GLU B 349 70.12 -161.64 REMARK 500 LEU B 350 -163.93 -177.97 REMARK 500 TYR B 358 -95.38 -100.69 REMARK 500 LYS B 385 -131.84 51.16 REMARK 500 ASN B 424 -92.18 -149.37 REMARK 500 PRO B 438 103.59 -51.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 7K7D A 0 535 UNP Q5PY51 Q5PY51_CORDP 1 536 DBREF 7K7D B 0 535 UNP Q5PY51 Q5PY51_CORDP 1 536 SEQADV 7K7D GLU A 51 UNP Q5PY51 LYS 52 ENGINEERED MUTATION SEQADV 7K7D LYS A 148 UNP Q5PY51 GLU 149 ENGINEERED MUTATION SEQADV 7K7D MET A 536 UNP Q5PY51 CLONING ARTIFACT SEQADV 7K7D ALA A 537 UNP Q5PY51 CLONING ARTIFACT SEQADV 7K7D GLU B 51 UNP Q5PY51 LYS 52 ENGINEERED MUTATION SEQADV 7K7D LYS B 148 UNP Q5PY51 GLU 149 ENGINEERED MUTATION SEQADV 7K7D MET B 536 UNP Q5PY51 CLONING ARTIFACT SEQADV 7K7D ALA B 537 UNP Q5PY51 CLONING ARTIFACT SEQRES 1 A 538 MET GLY ALA ASP ASP VAL VAL ASP SER SER LYS SER PHE SEQRES 2 A 538 VAL MET GLU ASN PHE SER SER TYR HIS GLY THR LYS PRO SEQRES 3 A 538 GLY TYR VAL ASP SER ILE GLN LYS GLY ILE GLN LYS PRO SEQRES 4 A 538 LYS SER GLY THR GLN GLY ASN TYR ASP ASP ASP TRP GLU SEQRES 5 A 538 GLY PHE TYR SER THR ASP ASN LYS TYR ASP ALA ALA GLY SEQRES 6 A 538 TYR SER VAL ASP ASN GLU ASN PRO LEU SER GLY LYS ALA SEQRES 7 A 538 GLY GLY VAL VAL LYS VAL THR TYR PRO GLY LEU THR LYS SEQRES 8 A 538 VAL LEU ALA LEU LYS VAL ASP ASN ALA GLU THR ILE LYS SEQRES 9 A 538 LYS GLU LEU GLY LEU SER LEU THR GLU PRO LEU MET GLU SEQRES 10 A 538 GLN VAL GLY THR GLU GLU PHE ILE LYS ARG PHE GLY ASP SEQRES 11 A 538 GLY ALA SER ARG VAL VAL LEU SER LEU PRO PHE ALA GLU SEQRES 12 A 538 GLY SER SER SER VAL LYS TYR ILE ASN ASN TRP GLU GLN SEQRES 13 A 538 ALA LYS ALA LEU SER VAL GLU LEU GLU ILE ASN PHE GLU SEQRES 14 A 538 THR ARG GLY LYS ARG GLY GLN ASP ALA MET TYR GLU TYR SEQRES 15 A 538 MET ALA GLN ALA CYS ALA GLY ASN ARG VAL ARG ARG SER SEQRES 16 A 538 VAL GLY SER SER LEU SER CYS ILE ASN LEU ASP TRP ASP SEQRES 17 A 538 VAL ILE ARG ASP LYS THR LYS THR LYS ILE GLU SER LEU SEQRES 18 A 538 LYS GLU HIS GLY PRO ILE LYS ASN LYS MET SER GLU SER SEQRES 19 A 538 PRO ASN LYS THR VAL SER GLU GLU LYS ALA LYS GLN TYR SEQRES 20 A 538 LEU GLU GLU PHE HIS GLN THR ALA LEU GLU HIS PRO GLU SEQRES 21 A 538 LEU SER GLU LEU LYS THR VAL THR GLY THR ASN PRO VAL SEQRES 22 A 538 PHE ALA GLY ALA ASN TYR ALA ALA TRP ALA VAL ASN VAL SEQRES 23 A 538 ALA GLN VAL ILE ASP SER GLU THR ALA ASP ASN LEU GLU SEQRES 24 A 538 LYS THR THR ALA ALA LEU SER ILE LEU PRO GLY ILE GLY SEQRES 25 A 538 SER VAL MET GLY ILE ALA ASP GLY ALA VAL HIS HIS ASN SEQRES 26 A 538 THR GLU GLU ILE VAL ALA GLN SER ILE ALA LEU SER SER SEQRES 27 A 538 LEU MET VAL ALA GLN ALA ILE PRO LEU VAL GLY GLU LEU SEQRES 28 A 538 VAL ASP ILE GLY PHE ALA ALA TYR ASN PHE VAL GLU SER SEQRES 29 A 538 ILE ILE ASN LEU PHE GLN VAL VAL HIS ASN SER TYR ASN SEQRES 30 A 538 ARG PRO ALA TYR SER PRO GLY HIS LYS THR GLN PRO PHE SEQRES 31 A 538 LEU HIS ASP GLY TYR ALA VAL SER TRP ASN THR VAL GLU SEQRES 32 A 538 ASP SER ILE ILE ARG THR GLY PHE GLN GLY GLU SER GLY SEQRES 33 A 538 HIS ASP ILE LYS ILE THR ALA GLU ASN THR PRO LEU PRO SEQRES 34 A 538 ILE ALA GLY VAL LEU LEU PRO THR ILE PRO GLY LYS LEU SEQRES 35 A 538 ASP VAL ASN LYS SER LYS THR HIS ILE SER VAL ASN GLY SEQRES 36 A 538 ARG LYS ILE ARG MET ARG CYS ARG ALA ILE ASP GLY ASP SEQRES 37 A 538 VAL THR PHE CYS ARG PRO LYS SER PRO VAL TYR VAL GLY SEQRES 38 A 538 ASN GLY VAL HIS ALA ASN LEU HIS VAL ALA PHE HIS ARG SEQRES 39 A 538 SER SER SER GLU LYS ILE HIS SER ASN GLU ILE SER SER SEQRES 40 A 538 ASP SER ILE GLY VAL LEU GLY TYR GLN LYS THR VAL ASP SEQRES 41 A 538 HIS THR LYS VAL ASN SER LYS LEU SER LEU PHE PHE GLU SEQRES 42 A 538 ILE LYS SER MET ALA SEQRES 1 B 538 MET GLY ALA ASP ASP VAL VAL ASP SER SER LYS SER PHE SEQRES 2 B 538 VAL MET GLU ASN PHE SER SER TYR HIS GLY THR LYS PRO SEQRES 3 B 538 GLY TYR VAL ASP SER ILE GLN LYS GLY ILE GLN LYS PRO SEQRES 4 B 538 LYS SER GLY THR GLN GLY ASN TYR ASP ASP ASP TRP GLU SEQRES 5 B 538 GLY PHE TYR SER THR ASP ASN LYS TYR ASP ALA ALA GLY SEQRES 6 B 538 TYR SER VAL ASP ASN GLU ASN PRO LEU SER GLY LYS ALA SEQRES 7 B 538 GLY GLY VAL VAL LYS VAL THR TYR PRO GLY LEU THR LYS SEQRES 8 B 538 VAL LEU ALA LEU LYS VAL ASP ASN ALA GLU THR ILE LYS SEQRES 9 B 538 LYS GLU LEU GLY LEU SER LEU THR GLU PRO LEU MET GLU SEQRES 10 B 538 GLN VAL GLY THR GLU GLU PHE ILE LYS ARG PHE GLY ASP SEQRES 11 B 538 GLY ALA SER ARG VAL VAL LEU SER LEU PRO PHE ALA GLU SEQRES 12 B 538 GLY SER SER SER VAL LYS TYR ILE ASN ASN TRP GLU GLN SEQRES 13 B 538 ALA LYS ALA LEU SER VAL GLU LEU GLU ILE ASN PHE GLU SEQRES 14 B 538 THR ARG GLY LYS ARG GLY GLN ASP ALA MET TYR GLU TYR SEQRES 15 B 538 MET ALA GLN ALA CYS ALA GLY ASN ARG VAL ARG ARG SER SEQRES 16 B 538 VAL GLY SER SER LEU SER CYS ILE ASN LEU ASP TRP ASP SEQRES 17 B 538 VAL ILE ARG ASP LYS THR LYS THR LYS ILE GLU SER LEU SEQRES 18 B 538 LYS GLU HIS GLY PRO ILE LYS ASN LYS MET SER GLU SER SEQRES 19 B 538 PRO ASN LYS THR VAL SER GLU GLU LYS ALA LYS GLN TYR SEQRES 20 B 538 LEU GLU GLU PHE HIS GLN THR ALA LEU GLU HIS PRO GLU SEQRES 21 B 538 LEU SER GLU LEU LYS THR VAL THR GLY THR ASN PRO VAL SEQRES 22 B 538 PHE ALA GLY ALA ASN TYR ALA ALA TRP ALA VAL ASN VAL SEQRES 23 B 538 ALA GLN VAL ILE ASP SER GLU THR ALA ASP ASN LEU GLU SEQRES 24 B 538 LYS THR THR ALA ALA LEU SER ILE LEU PRO GLY ILE GLY SEQRES 25 B 538 SER VAL MET GLY ILE ALA ASP GLY ALA VAL HIS HIS ASN SEQRES 26 B 538 THR GLU GLU ILE VAL ALA GLN SER ILE ALA LEU SER SER SEQRES 27 B 538 LEU MET VAL ALA GLN ALA ILE PRO LEU VAL GLY GLU LEU SEQRES 28 B 538 VAL ASP ILE GLY PHE ALA ALA TYR ASN PHE VAL GLU SER SEQRES 29 B 538 ILE ILE ASN LEU PHE GLN VAL VAL HIS ASN SER TYR ASN SEQRES 30 B 538 ARG PRO ALA TYR SER PRO GLY HIS LYS THR GLN PRO PHE SEQRES 31 B 538 LEU HIS ASP GLY TYR ALA VAL SER TRP ASN THR VAL GLU SEQRES 32 B 538 ASP SER ILE ILE ARG THR GLY PHE GLN GLY GLU SER GLY SEQRES 33 B 538 HIS ASP ILE LYS ILE THR ALA GLU ASN THR PRO LEU PRO SEQRES 34 B 538 ILE ALA GLY VAL LEU LEU PRO THR ILE PRO GLY LYS LEU SEQRES 35 B 538 ASP VAL ASN LYS SER LYS THR HIS ILE SER VAL ASN GLY SEQRES 36 B 538 ARG LYS ILE ARG MET ARG CYS ARG ALA ILE ASP GLY ASP SEQRES 37 B 538 VAL THR PHE CYS ARG PRO LYS SER PRO VAL TYR VAL GLY SEQRES 38 B 538 ASN GLY VAL HIS ALA ASN LEU HIS VAL ALA PHE HIS ARG SEQRES 39 B 538 SER SER SER GLU LYS ILE HIS SER ASN GLU ILE SER SER SEQRES 40 B 538 ASP SER ILE GLY VAL LEU GLY TYR GLN LYS THR VAL ASP SEQRES 41 B 538 HIS THR LYS VAL ASN SER LYS LEU SER LEU PHE PHE GLU SEQRES 42 B 538 ILE LYS SER MET ALA FORMUL 3 HOH *227(H2 O) HELIX 1 AA1 ASP A 7 SER A 11 5 5 HELIX 2 AA2 ASP A 29 GLY A 34 5 6 HELIX 3 AA3 ASN A 58 GLY A 64 1 7 HELIX 4 AA4 ASN A 98 LEU A 106 1 9 HELIX 5 AA5 PRO A 113 GLY A 119 1 7 HELIX 6 AA6 THR A 120 ASP A 129 1 10 HELIX 7 AA7 GLU A 154 LEU A 159 5 6 HELIX 8 AA8 PHE A 167 GLY A 171 1 5 HELIX 9 AA9 GLN A 175 ALA A 183 1 9 HELIX 10 AB1 GLN A 184 ALA A 187 5 4 HELIX 11 AB2 ASP A 205 GLU A 222 1 18 HELIX 12 AB3 GLY A 224 GLU A 232 1 9 HELIX 13 AB4 SER A 239 GLU A 256 1 18 HELIX 14 AB5 HIS A 257 GLU A 259 5 3 HELIX 15 AB6 LEU A 260 THR A 267 1 8 HELIX 16 AB7 ASN A 270 PHE A 273 5 4 HELIX 17 AB8 ALA A 274 ILE A 289 1 16 HELIX 18 AB9 ASP A 290 ASP A 295 1 6 HELIX 19 AC1 ASN A 296 SER A 305 1 10 HELIX 20 AC2 ILE A 310 GLY A 315 1 6 HELIX 21 AC3 THR A 325 VAL A 347 1 23 HELIX 22 AC4 GLY A 354 ALA A 357 5 4 HELIX 23 AC5 TYR A 358 ARG A 377 1 20 HELIX 24 AC6 VAL A 401 ASP A 403 5 3 HELIX 25 AC7 ASP B 29 GLY B 34 5 6 HELIX 26 AC8 ASN B 58 GLY B 64 1 7 HELIX 27 AC9 ASN B 98 LEU B 106 1 9 HELIX 28 AD1 PRO B 113 GLY B 119 1 7 HELIX 29 AD2 THR B 120 GLY B 128 1 9 HELIX 30 AD3 ASN B 152 LYS B 157 1 6 HELIX 31 AD4 GLU B 168 GLY B 171 5 4 HELIX 32 AD5 GLN B 175 ALA B 183 1 9 HELIX 33 AD6 GLN B 184 ALA B 187 5 4 HELIX 34 AD7 ASP B 205 GLU B 222 1 18 HELIX 35 AD8 HIS B 223 GLU B 232 1 10 HELIX 36 AD9 SER B 239 LEU B 255 1 17 HELIX 37 AE1 GLU B 256 GLU B 259 5 4 HELIX 38 AE2 LEU B 260 THR B 267 1 8 HELIX 39 AE3 ASN B 270 PHE B 273 5 4 HELIX 40 AE4 ALA B 274 ILE B 289 1 16 HELIX 41 AE5 ASP B 290 ASP B 295 1 6 HELIX 42 AE6 ASN B 296 SER B 305 1 10 HELIX 43 AE7 GLY B 309 GLY B 315 1 7 HELIX 44 AE8 THR B 325 GLY B 348 1 24 HELIX 45 AE9 TYR B 358 ARG B 377 1 20 HELIX 46 AF1 THR B 400 ASP B 403 5 4 HELIX 47 AF2 HIS B 500 ILE B 504 5 5 SHEET 1 AA1 5 PHE A 12 GLU A 15 0 SHEET 2 AA1 5 LEU A 88 ALA A 93 -1 O VAL A 91 N PHE A 12 SHEET 3 AA1 5 ARG A 133 PRO A 139 1 O VAL A 135 N LEU A 92 SHEET 4 AA1 5 VAL A 147 ASN A 151 -1 O LYS A 148 N LEU A 138 SHEET 5 AA1 5 PHE A 53 THR A 56 -1 N SER A 55 O TYR A 149 SHEET 1 AA2 3 SER A 18 THR A 23 0 SHEET 2 AA2 3 GLY A 79 THR A 84 -1 O GLY A 79 N THR A 23 SHEET 3 AA2 3 SER A 160 ASN A 166 -1 O GLU A 162 N LYS A 82 SHEET 1 AA3 2 ILE A 316 ALA A 317 0 SHEET 2 AA3 2 ALA A 320 VAL A 321 -1 O ALA A 320 N ALA A 317 SHEET 1 AA4 5 PHE A 389 HIS A 391 0 SHEET 2 AA4 5 TYR A 394 TRP A 398 -1 O VAL A 396 N PHE A 389 SHEET 3 AA4 5 GLY A 412 ALA A 422 -1 O LYS A 419 N SER A 397 SHEET 4 AA4 5 ALA A 485 ARG A 493 -1 O LEU A 487 N ILE A 418 SHEET 5 AA4 5 ASP A 442 VAL A 443 -1 N ASP A 442 O HIS A 492 SHEET 1 AA510 PHE A 389 HIS A 391 0 SHEET 2 AA510 TYR A 394 TRP A 398 -1 O VAL A 396 N PHE A 389 SHEET 3 AA510 GLY A 412 ALA A 422 -1 O LYS A 419 N SER A 397 SHEET 4 AA510 ALA A 485 ARG A 493 -1 O LEU A 487 N ILE A 418 SHEET 5 AA510 HIS A 449 VAL A 452 -1 N HIS A 449 O HIS A 488 SHEET 6 AA510 ARG A 455 ASP A 465 -1 O ILE A 457 N ILE A 450 SHEET 7 AA510 VAL A 468 PRO A 473 -1 O ARG A 472 N ARG A 460 SHEET 8 AA510 GLY A 431 PRO A 435 -1 N LEU A 434 O THR A 469 SHEET 9 AA510 SER A 508 GLN A 515 -1 O GLY A 510 N LEU A 433 SHEET 10 AA510 ASN A 524 PHE A 530 -1 O LEU A 527 N VAL A 511 SHEET 1 AA6 2 ILE A 405 THR A 408 0 SHEET 2 AA6 2 GLU A 532 SER A 535 1 O LYS A 534 N THR A 408 SHEET 1 AA7 2 LEU A 427 PRO A 428 0 SHEET 2 AA7 2 TYR A 478 VAL A 479 -1 O VAL A 479 N LEU A 427 SHEET 1 AA8 5 PHE B 12 GLU B 15 0 SHEET 2 AA8 5 LEU B 88 ALA B 93 -1 O THR B 89 N MET B 14 SHEET 3 AA8 5 ARG B 133 PRO B 139 1 O VAL B 135 N LEU B 92 SHEET 4 AA8 5 VAL B 147 ASN B 151 -1 O LYS B 148 N LEU B 138 SHEET 5 AA8 5 PHE B 53 THR B 56 -1 N SER B 55 O TYR B 149 SHEET 1 AA9 3 SER B 18 THR B 23 0 SHEET 2 AA9 3 GLY B 79 THR B 84 -1 O GLY B 79 N THR B 23 SHEET 3 AA9 3 SER B 160 ASN B 166 -1 O GLU B 162 N LYS B 82 SHEET 1 AB1 2 ILE B 316 ALA B 317 0 SHEET 2 AB1 2 ALA B 320 VAL B 321 -1 O ALA B 320 N ALA B 317 SHEET 1 AB2 5 PHE B 389 HIS B 391 0 SHEET 2 AB2 5 TYR B 394 TRP B 398 -1 O VAL B 396 N PHE B 389 SHEET 3 AB2 5 GLY B 412 ALA B 422 -1 O LYS B 419 N SER B 397 SHEET 4 AB2 5 ALA B 485 ARG B 493 -1 O ALA B 485 N ILE B 420 SHEET 5 AB2 5 LEU B 441 VAL B 443 -1 N ASP B 442 O HIS B 492 SHEET 1 AB310 PHE B 389 HIS B 391 0 SHEET 2 AB310 TYR B 394 TRP B 398 -1 O VAL B 396 N PHE B 389 SHEET 3 AB310 GLY B 412 ALA B 422 -1 O LYS B 419 N SER B 397 SHEET 4 AB310 ALA B 485 ARG B 493 -1 O ALA B 485 N ILE B 420 SHEET 5 AB310 HIS B 449 VAL B 452 -1 N HIS B 449 O HIS B 488 SHEET 6 AB310 ARG B 455 ALA B 463 -1 O ILE B 457 N ILE B 450 SHEET 7 AB310 VAL B 468 PRO B 473 -1 O ARG B 472 N ARG B 460 SHEET 8 AB310 GLY B 431 PRO B 435 -1 N LEU B 434 O THR B 469 SHEET 9 AB310 SER B 508 GLN B 515 -1 O GLY B 510 N LEU B 433 SHEET 10 AB310 ASN B 524 PHE B 530 -1 O LEU B 529 N ILE B 509 SHEET 1 AB4 2 ILE B 405 THR B 408 0 SHEET 2 AB4 2 GLU B 532 SER B 535 1 O GLU B 532 N ILE B 406 SHEET 1 AB5 2 LEU B 427 PRO B 428 0 SHEET 2 AB5 2 TYR B 478 VAL B 479 -1 O VAL B 479 N LEU B 427 SSBOND 1 CYS A 186 CYS A 201 1555 1555 2.10 SSBOND 2 CYS A 461 CYS A 471 1555 1555 2.10 SSBOND 3 CYS B 186 CYS B 201 1555 1555 2.08 SSBOND 4 CYS B 461 CYS B 471 1555 1555 2.09 CRYST1 69.439 69.605 73.122 117.90 93.86 97.93 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014401 0.002005 0.002216 0.00000 SCALE2 0.000000 0.014505 0.008000 0.00000 SCALE3 0.000000 0.000000 0.015653 0.00000