HEADER CELL ADHESION 22-SEP-20 7K7F TITLE SOLUTION STRUCTURE OF THE CORYNEBACTERIUM DIPHTHERIAE SPAA PILIN- TITLE 2 SIGNAL PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SURFACE-ANCHORED FIMBRIAL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 53-195; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SPAA SORTING SIGNAL PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE (STRAIN ATCC 700971 SOURCE 3 / NCTC 13129 / BIOTYPE GRAVIS); SOURCE 4 ORGANISM_TAXID: 257309; SOURCE 5 STRAIN: ATCC 700971 / NCTC 13129 / BIOTYPE GRAVIS; SOURCE 6 GENE: DIP2013; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSUMO; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 15 ORGANISM_TAXID: 1717 KEYWDS PILI, BACKBONE PILIN, SORTASE, LYSINE ISOPEPTIDE BOND, GRAM-POSITIVE KEYWDS 2 BACTERIA, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.A.MCCONNELL,R.T.CLUBB REVDAT 2 21-APR-21 7K7F 1 JRNL REVDAT 1 10-MAR-21 7K7F 0 JRNL AUTH S.A.MCCONNELL,R.A.MCALLISTER,B.R.AMER,B.J.MAHONEY,C.K.SUE, JRNL AUTH 2 C.CHANG,H.TON-THAT,R.T.CLUBB JRNL TITL SORTASE-ASSEMBLED PILI IN CORYNEBACTERIUM DIPHTHERIAE ARE JRNL TITL 2 BUILT USING A LATCH MECHANISM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33723052 JRNL DOI 10.1073/PNAS.2019649118 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.37, MOLMOL, PROCHECK / PROCHECK-NMR REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), KORADI, BILLETER AND WUTHRICH (MOLMOL), REMARK 3 LASKOWSKI, MACARTHUR, SMITH, JONES, HUTCHINSON, REMARK 3 MORRIS, MOSS AND THORNTON (PROCHECK / PROCHECK-NMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOE RESTRAINTS REFINED IN XIPP, REMARK 3 STRUCTURES WERE CALCULATED WITH A SIMULATED ANNEALING PROTOCOL REMARK 3 USING XPLOR-NIH REMARK 4 REMARK 4 7K7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251904. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 100MM NACL; 100MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-13C; U-15N] SPAA REMARK 210 BACKBONE PILIN FOR PROTEIN, 1.2 REMARK 210 MM SPAA SORTING SIGNAL FOR REMARK 210 PEPTIDE, 50 MM NAH2PO4, 100 MM REMARK 210 NACL, 0.01 % NAN3, 92% H2O, 8% REMARK 210 D2O; 1.2 MM [U-13C; U-15N] SPAA REMARK 210 BACKBONE PILIN FOR PROTEIN, 1.2 REMARK 210 MM SPAA SORTING SIGNAL FOR REMARK 210 PEPTIDE, 50 MM NAH2PO4, 100 MM REMARK 210 NACL, 0.01 % NAN3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; REMARK 210 3D_(F1)_13C,15N-FILTERED_(F2)_15N-EDITED NOESY-HSQC; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; 2D 1H-13C HSQC AROMATIC; 3D HNCACB; 1H-15N REMARK 210 HETERONOE; 3D CBCA(CO)NH; T2/R2 RELAXATION; T1/R1 RELAXATION; 3D REMARK 210 HN(CA)CO; 3D HNCO; 3D HCCH-COSY; 3D HNHA; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N TOCSY; 3D H(CCO)NH; 2D (F1,F2) 13C-FILTERED NOESY; 2D (F1) REMARK 210 13C,15N-FILTERED TOCSY; 3D_13C-SEPARATED_NOESY_ALIPHATIC_D2O; 3D_ REMARK 210 (F1)_13C,15N-FILTERED_(F2)_13C-EDITED NOESY-HSQC; 3D_13C- REMARK 210 SEPARATED_NOESY_AROMATIC_D2O; 3D_13C-SEPARATED_NOESY_ALIPHATIC_ REMARK 210 H2O REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.37, XIPP 1.19, REMARK 210 UNIO, NMRPIPE, TOPSPIN, NMRFAM- REMARK 210 SPARKY, CARA, TALOS-N REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 67 73.77 -101.68 REMARK 500 1 GLU A 96 -2.04 66.35 REMARK 500 1 THR A 118 -53.10 -126.55 REMARK 500 1 THR A 123 -166.68 -108.10 REMARK 500 1 ALA A 147 -133.45 -179.48 REMARK 500 1 ASN B 486 -90.24 56.04 REMARK 500 1 PHE B 489 -84.41 -133.14 REMARK 500 1 GLU B 490 85.97 -161.36 REMARK 500 2 THR A 67 75.11 -104.08 REMARK 500 2 GLU A 96 10.82 55.82 REMARK 500 2 THR A 118 -47.21 -135.77 REMARK 500 2 THR A 123 -168.17 -104.11 REMARK 500 2 ALA A 147 -133.35 -178.52 REMARK 500 2 PHE B 489 -79.80 -122.47 REMARK 500 2 GLU B 490 85.72 -159.37 REMARK 500 3 THR A 67 76.70 -106.06 REMARK 500 3 GLU A 96 -3.28 66.72 REMARK 500 3 LEU A 116 -60.17 -107.79 REMARK 500 3 THR A 118 -50.90 -141.16 REMARK 500 3 THR A 123 -167.79 -107.94 REMARK 500 3 VAL A 129 -61.98 -102.80 REMARK 500 3 ALA A 147 -133.15 -174.98 REMARK 500 3 PHE B 489 -77.06 -140.64 REMARK 500 3 GLU B 490 88.78 -167.62 REMARK 500 4 ARG A 54 -169.59 -113.72 REMARK 500 4 GLU A 96 -2.69 69.99 REMARK 500 4 THR A 118 -56.85 -126.22 REMARK 500 4 THR A 123 -167.60 -106.39 REMARK 500 4 ALA A 147 -132.46 -178.50 REMARK 500 4 ASN A 156 142.53 -38.08 REMARK 500 4 PHE B 489 -82.96 -104.46 REMARK 500 4 GLU B 490 84.87 -157.70 REMARK 500 5 THR A 67 70.61 -104.00 REMARK 500 5 GLU A 96 -2.50 67.86 REMARK 500 5 LEU A 99 33.37 -83.06 REMARK 500 5 LEU A 116 -60.32 -104.63 REMARK 500 5 THR A 118 -50.70 -139.61 REMARK 500 5 THR A 123 -166.76 -108.84 REMARK 500 5 ALA A 147 -134.69 -176.07 REMARK 500 5 PHE B 489 -74.90 -128.01 REMARK 500 5 GLU B 490 79.39 -159.20 REMARK 500 6 THR A 67 71.29 -103.58 REMARK 500 6 GLU A 96 -1.87 67.12 REMARK 500 6 THR A 118 -53.27 -127.90 REMARK 500 6 THR A 123 -167.41 -104.91 REMARK 500 6 VAL A 129 -65.82 -109.62 REMARK 500 6 ALA A 147 -132.62 -175.24 REMARK 500 6 ALA B 487 -147.30 80.14 REMARK 500 6 PHE B 489 -75.15 -138.04 REMARK 500 6 GLU B 490 90.21 -171.14 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30800 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE CORYNEBACTERIUM DIPHTHERIAE SPAA PILIN- REMARK 900 SIGNAL PEPTIDE COMPLEX DBREF 7K7F A 53 195 UNP Q6NF81 Q6NF81_CORDI 53 195 DBREF 7K7F B 485 494 PDB 7K7F 7K7F 485 494 SEQRES 1 A 143 GLU ARG THR SER ILE ALA VAL HIS ALA LEU MET GLY LEU SEQRES 2 A 143 PRO THR GLY GLN PRO ALA ASN GLY THR LYS LEU ASP SER SEQRES 3 A 143 ILE GLY LEU PRO LYS VAL ASP GLY MET SER PHE THR LEU SEQRES 4 A 143 TYR ARG VAL ASN GLU ILE ASP LEU THR THR GLN ALA GLY SEQRES 5 A 143 TRP ASP ALA ALA SER LYS ILE LYS LEU GLU GLU LEU TYR SEQRES 6 A 143 THR ASN GLY HIS PRO THR ASP LYS VAL THR LYS VAL ALA SEQRES 7 A 143 THR LYS LYS THR GLU GLY GLY VAL ALA LYS PHE ASP ASN SEQRES 8 A 143 LEU THR PRO ALA LEU TYR LEU VAL VAL GLN GLU LEU ASN SEQRES 9 A 143 GLY ALA GLU ALA VAL VAL ARG SER GLN PRO PHE LEU VAL SEQRES 10 A 143 ALA ALA PRO GLN THR ASN PRO THR GLY ASP GLY TRP LEU SEQRES 11 A 143 GLN ASP VAL HIS VAL TYR PRO LYS HIS GLN ALA LEU SER SEQRES 1 B 10 LYS ASN ALA GLY PHE GLU LEU PRO LEU THR HELIX 1 AA1 THR A 101 LYS A 110 1 10 HELIX 2 AA2 LYS A 112 TYR A 117 1 6 SHEET 1 AA1 3 VAL A 138 LEU A 144 0 SHEET 2 AA1 3 THR A 55 HIS A 60 -1 N VAL A 59 O ALA A 139 SHEET 3 AA1 3 ASP A 184 VAL A 187 1 O VAL A 187 N HIS A 60 SHEET 1 AA2 3 LEU A 62 MET A 63 0 SHEET 2 AA2 3 LYS A 190 ALA A 193 1 O HIS A 191 N LEU A 62 SHEET 3 AA2 3 VAL A 161 VAL A 162 -1 N VAL A 162 O GLN A 192 SHEET 1 AA3 4 VAL A 126 THR A 134 0 SHEET 2 AA3 4 MET A 87 VAL A 94 -1 N ARG A 93 O THR A 127 SHEET 3 AA3 4 ALA A 147 GLN A 153 -1 O VAL A 152 N THR A 90 SHEET 4 AA3 4 PHE A 167 ALA A 171 -1 O ALA A 171 N ALA A 147 SHEET 1 AA4 2 GLN A 173 THR A 174 0 SHEET 2 AA4 2 TRP A 181 LEU A 182 -1 O LEU A 182 N GLN A 173 LINK NZ LYS A 190 C THR B 494 1555 1555 1.33 CISPEP 1 ALA A 171 PRO A 172 1 -0.81 CISPEP 2 ALA A 171 PRO A 172 2 -1.51 CISPEP 3 ALA A 171 PRO A 172 3 -0.83 CISPEP 4 ALA A 171 PRO A 172 4 -1.96 CISPEP 5 ALA A 171 PRO A 172 5 -1.35 CISPEP 6 ALA A 171 PRO A 172 6 -0.75 CISPEP 7 ALA A 171 PRO A 172 7 -1.29 CISPEP 8 ALA A 171 PRO A 172 8 0.05 CISPEP 9 ALA A 171 PRO A 172 9 -0.68 CISPEP 10 ALA A 171 PRO A 172 10 -1.13 CISPEP 11 ALA A 171 PRO A 172 11 0.26 CISPEP 12 ALA A 171 PRO A 172 12 -0.42 CISPEP 13 ALA A 171 PRO A 172 13 -1.19 CISPEP 14 ALA A 171 PRO A 172 14 -0.66 CISPEP 15 ALA A 171 PRO A 172 15 -0.90 CISPEP 16 ALA A 171 PRO A 172 16 -1.43 CISPEP 17 ALA A 171 PRO A 172 17 0.08 CISPEP 18 ALA A 171 PRO A 172 18 -1.36 CISPEP 19 ALA A 171 PRO A 172 19 -1.11 CISPEP 20 ALA A 171 PRO A 172 20 0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1