HEADER TRANSFERASE 22-SEP-20 7K7J TITLE EPHB6 RECEPTOR ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 6; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHB6; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS RECEPTOR TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GOLDGUR,J.HIMANEN REVDAT 4 16-OCT-24 7K7J 1 REMARK REVDAT 3 18-OCT-23 7K7J 1 REMARK REVDAT 2 14-APR-21 7K7J 1 JRNL REVDAT 1 07-APR-21 7K7J 0 JRNL AUTH E.O.MASON,Y.GOLDGUR,D.ROBEV,A.FREYWALD,D.B.NIKOLOV, JRNL AUTH 2 J.P.HIMANEN JRNL TITL STRUCTURE OF THE EPHB6 RECEPTOR ECTODOMAIN. JRNL REF PLOS ONE V. 16 47335 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 33770085 JRNL DOI 10.1371/JOURNAL.PONE.0247335 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.16_3549: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0500 - 5.7437 1.00 3176 158 0.2396 0.2875 REMARK 3 2 5.7437 - 4.5601 1.00 3013 143 0.2031 0.2640 REMARK 3 3 4.5601 - 3.9840 1.00 2974 146 0.2019 0.2480 REMARK 3 4 3.9840 - 3.6199 1.00 2935 146 0.2263 0.2865 REMARK 3 5 3.6199 - 3.3605 1.00 2929 153 0.2616 0.2890 REMARK 3 6 3.3605 - 3.1624 1.00 2898 161 0.2914 0.3609 REMARK 3 7 3.1624 - 3.0040 0.99 2887 139 0.3527 0.4372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3341 REMARK 3 ANGLE : 1.423 4551 REMARK 3 CHIRALITY : 0.066 487 REMARK 3 PLANARITY : 0.010 615 REMARK 3 DIHEDRAL : 9.796 1986 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6667 -11.0580 -16.9529 REMARK 3 T TENSOR REMARK 3 T11: 0.4982 T22: 0.4766 REMARK 3 T33: 0.4240 T12: -0.0529 REMARK 3 T13: -0.0845 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 2.6337 L22: 6.0777 REMARK 3 L33: 4.4021 L12: -0.9744 REMARK 3 L13: -1.6707 L23: 1.2683 REMARK 3 S TENSOR REMARK 3 S11: -0.1754 S12: -0.3202 S13: 0.0278 REMARK 3 S21: -0.0721 S22: 0.2013 S23: -0.3118 REMARK 3 S31: -0.0193 S32: -0.1158 S33: 0.0203 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8847 2.7107 -12.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.7575 T22: 0.6640 REMARK 3 T33: 0.4388 T12: 0.1969 REMARK 3 T13: 0.0919 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 5.0423 L22: 3.2376 REMARK 3 L33: 0.1435 L12: -3.2117 REMARK 3 L13: 0.3744 L23: 0.3194 REMARK 3 S TENSOR REMARK 3 S11: -0.2052 S12: -0.2908 S13: 0.2020 REMARK 3 S21: 0.5279 S22: 0.2045 S23: 0.0125 REMARK 3 S31: -0.4348 S32: -0.4208 S33: -0.0030 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): -73.5270 42.2984 -9.8800 REMARK 3 T TENSOR REMARK 3 T11: 0.4765 T22: 0.5582 REMARK 3 T33: 0.5525 T12: 0.0420 REMARK 3 T13: 0.0172 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.9776 L22: 1.9036 REMARK 3 L33: 3.4587 L12: -1.0318 REMARK 3 L13: -1.1970 L23: 0.7144 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: -0.0548 S13: 0.0905 REMARK 3 S21: -0.1223 S22: -0.0572 S23: 0.2350 REMARK 3 S31: -0.3041 S32: -0.5854 S33: -0.0535 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21919 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3FL7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM NITRATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.36200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.65500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.54300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.65500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.18100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.65500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 141.54300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.65500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.18100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.36200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 132 REMARK 465 PRO A 133 REMARK 465 SER A 134 REMARK 465 SER A 135 REMARK 465 SER A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 SER A 139 REMARK 465 SER A 140 REMARK 465 SER A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 SER A 144 REMARK 465 SER A 145 REMARK 465 ALA A 146 REMARK 465 ALA A 147 REMARK 465 TRP A 148 REMARK 465 ALA A 149 REMARK 465 VAL A 150 REMARK 465 GLY A 151 REMARK 465 PRO A 152 REMARK 465 HIS A 153 REMARK 465 ASP A 240 REMARK 465 GLY A 241 REMARK 465 VAL A 242 REMARK 465 GLY A 243 REMARK 465 GLY A 244 REMARK 465 GLN A 245 REMARK 465 ALA A 246 REMARK 465 GLY A 247 REMARK 465 GLY A 248 REMARK 465 PRO A 461 REMARK 465 VAL A 462 REMARK 465 VAL A 463 REMARK 465 HIS A 464 REMARK 465 GLN A 465 REMARK 465 VAL A 466 REMARK 465 SER A 467 REMARK 465 ARG A 468 REMARK 465 ALA A 469 REMARK 465 SER A 470 REMARK 465 ASN A 471 REMARK 465 SER A 472 REMARK 465 ILE A 473 REMARK 465 THR A 474 REMARK 465 VAL A 475 REMARK 465 SER A 476 REMARK 465 TRP A 477 REMARK 465 PRO A 478 REMARK 465 GLN A 479 REMARK 465 PRO A 480 REMARK 465 ASP A 481 REMARK 465 GLN A 482 REMARK 465 THR A 483 REMARK 465 ASN A 484 REMARK 465 GLY A 485 REMARK 465 ASN A 486 REMARK 465 ILE A 487 REMARK 465 LEU A 488 REMARK 465 ASP A 489 REMARK 465 TYR A 490 REMARK 465 GLN A 491 REMARK 465 LEU A 492 REMARK 465 ARG A 493 REMARK 465 TYR A 494 REMARK 465 TYR A 495 REMARK 465 ASP A 496 REMARK 465 GLN A 497 REMARK 465 ALA A 498 REMARK 465 GLU A 499 REMARK 465 ASP A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 HIS A 503 REMARK 465 SER A 504 REMARK 465 PHE A 505 REMARK 465 THR A 506 REMARK 465 LEU A 507 REMARK 465 THR A 508 REMARK 465 SER A 509 REMARK 465 GLU A 510 REMARK 465 THR A 511 REMARK 465 ASN A 512 REMARK 465 THR A 513 REMARK 465 ALA A 514 REMARK 465 THR A 515 REMARK 465 VAL A 516 REMARK 465 THR A 517 REMARK 465 GLN A 518 REMARK 465 LEU A 519 REMARK 465 SER A 520 REMARK 465 PRO A 521 REMARK 465 GLY A 522 REMARK 465 HIS A 523 REMARK 465 ILE A 524 REMARK 465 TYR A 525 REMARK 465 GLY A 526 REMARK 465 PHE A 527 REMARK 465 GLN A 528 REMARK 465 VAL A 529 REMARK 465 ARG A 530 REMARK 465 ALA A 531 REMARK 465 ARG A 532 REMARK 465 THR A 533 REMARK 465 ALA A 534 REMARK 465 ALA A 535 REMARK 465 GLY A 536 REMARK 465 HIS A 537 REMARK 465 GLY A 538 REMARK 465 PRO A 539 REMARK 465 TYR A 540 REMARK 465 GLY A 541 REMARK 465 GLY A 542 REMARK 465 LYS A 543 REMARK 465 VAL A 544 REMARK 465 TYR A 545 REMARK 465 PHE A 546 REMARK 465 GLN A 547 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 325 O ALA A 333 2.08 REMARK 500 O TRP A 115 N LEU A 117 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 439 N - CA - CB ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 10 46.68 37.49 REMARK 500 THR A 11 -36.25 75.48 REMARK 500 SER A 12 -27.66 -162.30 REMARK 500 GLU A 13 73.53 58.24 REMARK 500 ARG A 34 -13.86 74.78 REMARK 500 THR A 52 10.80 56.69 REMARK 500 ARG A 66 -68.31 -27.56 REMARK 500 SER A 108 85.93 42.87 REMARK 500 ASP A 110 -13.33 68.00 REMARK 500 SER A 113 48.82 -84.75 REMARK 500 TRP A 115 -94.65 -87.05 REMARK 500 HIS A 116 -15.05 36.55 REMARK 500 ALA A 159 32.54 73.69 REMARK 500 GLN A 162 6.33 -69.08 REMARK 500 ALA A 216 83.40 68.20 REMARK 500 HIS A 234 38.20 71.75 REMARK 500 ARG A 278 5.49 58.95 REMARK 500 ASP A 280 15.48 46.75 REMARK 500 SER A 294 -152.38 -150.63 REMARK 500 ALA A 295 -70.65 -40.72 REMARK 500 ASP A 369 48.23 -92.98 REMARK 500 ALA A 386 67.12 60.35 REMARK 500 SER A 387 30.02 -96.54 REMARK 500 HIS A 401 126.04 -39.69 REMARK 500 ARG A 405 -34.27 -142.74 REMARK 500 GLN A 406 -22.32 72.06 REMARK 500 SER A 436 -3.04 85.75 REMARK 500 VAL A 456 79.72 60.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 11 SER A 12 141.54 REMARK 500 GLN A 33 ARG A 34 148.37 REMARK 500 ARG A 65 ARG A 66 -129.03 REMARK 500 ASP A 107 SER A 108 146.08 REMARK 500 SER A 114 TRP A 115 -149.27 REMARK 500 GLN A 215 ALA A 216 134.37 REMARK 500 ALA A 216 SER A 217 139.35 REMARK 500 PRO A 250 PRO A 251 -149.44 REMARK 500 MET A 262 VAL A 263 -145.04 REMARK 500 ALA A 293 SER A 294 -144.59 REMARK 500 ALA A 295 GLY A 296 -145.20 REMARK 500 SER A 436 GLU A 437 141.05 REMARK 500 LEU A 438 SER A 439 137.15 REMARK 500 SER A 439 PRO A 440 135.36 REMARK 500 PRO A 440 ASP A 441 109.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7K7J A 1 547 UNP F8WCM8 F8WCM8_HUMAN 33 579 SEQRES 1 A 547 GLU GLU VAL LEU LEU ASP THR THR GLY GLU THR SER GLU SEQRES 2 A 547 ILE GLY TRP LEU THR TYR PRO PRO GLY GLY TRP ASP GLU SEQRES 3 A 547 VAL SER VAL LEU ASP ASP GLN ARG ARG LEU THR ARG THR SEQRES 4 A 547 PHE GLU ALA CYS HIS VAL ALA GLY ALA PRO PRO GLY THR SEQRES 5 A 547 GLY GLN ASP ASN TRP LEU GLN THR HIS PHE VAL GLU ARG SEQRES 6 A 547 ARG GLY ALA GLN ARG ALA HIS ILE ARG LEU HIS PHE SER SEQRES 7 A 547 VAL ARG ALA CYS SER SER LEU GLY VAL SER GLY GLY THR SEQRES 8 A 547 CYS ARG GLU THR PHE THR LEU TYR TYR ARG GLN ALA GLU SEQRES 9 A 547 GLU PRO ASP SER PRO ASP SER VAL SER SER TRP HIS LEU SEQRES 10 A 547 LYS ARG TRP THR LYS VAL ASP THR ILE ALA ALA ASP GLU SEQRES 11 A 547 SER PHE PRO SER SER SER SER SER SER SER SER SER SER SEQRES 12 A 547 SER SER ALA ALA TRP ALA VAL GLY PRO HIS GLY ALA GLY SEQRES 13 A 547 GLN ARG ALA GLY LEU GLN LEU ASN VAL LYS GLU ARG SER SEQRES 14 A 547 PHE GLY PRO LEU THR GLN ARG GLY PHE TYR VAL ALA PHE SEQRES 15 A 547 GLN ASP THR GLY ALA CYS LEU ALA LEU VAL ALA VAL ARG SEQRES 16 A 547 LEU PHE SER TYR THR CYS PRO ALA VAL LEU ARG SER PHE SEQRES 17 A 547 ALA SER PHE PRO GLU THR GLN ALA SER GLY ALA GLY GLY SEQRES 18 A 547 ALA SER LEU VAL ALA ALA VAL GLY THR CYS VAL ALA HIS SEQRES 19 A 547 ALA GLU PRO GLU GLU ASP GLY VAL GLY GLY GLN ALA GLY SEQRES 20 A 547 GLY SER PRO PRO ARG LEU HIS CYS ASN GLY GLU GLY LYS SEQRES 21 A 547 TRP MET VAL ALA VAL GLY GLY CYS ARG CYS GLN PRO GLY SEQRES 22 A 547 TYR GLN PRO ALA ARG GLY ASP LYS ALA CYS GLN ALA CYS SEQRES 23 A 547 PRO ARG GLY LEU TYR LYS ALA SER ALA GLY ASN ALA PRO SEQRES 24 A 547 CYS SER PRO CYS PRO ALA ARG SER HIS ALA PRO ASN PRO SEQRES 25 A 547 ALA ALA PRO VAL CYS PRO CYS LEU GLU GLY PHE TYR ARG SEQRES 26 A 547 ALA SER SER ASP PRO PRO GLU ALA PRO CYS THR GLY PRO SEQRES 27 A 547 PRO SER ALA PRO GLN GLU LEU TRP PHE GLU VAL GLN GLY SEQRES 28 A 547 SER ALA LEU MET LEU HIS TRP ARG LEU PRO ARG GLU LEU SEQRES 29 A 547 GLY GLY ARG GLY ASP LEU LEU PHE ASN VAL VAL CYS LYS SEQRES 30 A 547 GLU CYS GLU GLY ARG GLN GLU PRO ALA SER GLY GLY GLY SEQRES 31 A 547 GLY THR CYS HIS ARG CYS ARG ASP GLU VAL HIS PHE ASP SEQRES 32 A 547 PRO ARG GLN ARG GLY LEU THR GLU SER ARG VAL LEU VAL SEQRES 33 A 547 GLY GLY LEU ARG ALA HIS VAL PRO TYR ILE LEU GLU VAL SEQRES 34 A 547 GLN ALA VAL ASN GLY VAL SER GLU LEU SER PRO ASP PRO SEQRES 35 A 547 PRO GLN ALA ALA ALA ILE ASN VAL SER THR SER HIS GLU SEQRES 36 A 547 VAL PRO SER ALA VAL PRO VAL VAL HIS GLN VAL SER ARG SEQRES 37 A 547 ALA SER ASN SER ILE THR VAL SER TRP PRO GLN PRO ASP SEQRES 38 A 547 GLN THR ASN GLY ASN ILE LEU ASP TYR GLN LEU ARG TYR SEQRES 39 A 547 TYR ASP GLN ALA GLU ASP GLU SER HIS SER PHE THR LEU SEQRES 40 A 547 THR SER GLU THR ASN THR ALA THR VAL THR GLN LEU SER SEQRES 41 A 547 PRO GLY HIS ILE TYR GLY PHE GLN VAL ARG ALA ARG THR SEQRES 42 A 547 ALA ALA GLY HIS GLY PRO TYR GLY GLY LYS VAL TYR PHE SEQRES 43 A 547 GLN HET NAG B 1 14 HET NAG B 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 AA1 CYS A 43 GLY A 47 5 5 HELIX 2 AA2 ALA A 81 LEU A 85 5 5 SHEET 1 AA1 4 GLU A 2 ASP A 6 0 SHEET 2 AA1 4 CYS A 188 SER A 198 -1 O SER A 198 N GLU A 2 SHEET 3 AA1 4 LEU A 36 ALA A 42 -1 N ALA A 42 O LEU A 189 SHEET 4 AA1 4 ASP A 25 LEU A 30 -1 N ASP A 25 O GLU A 41 SHEET 1 AA2 4 GLU A 2 ASP A 6 0 SHEET 2 AA2 4 CYS A 188 SER A 198 -1 O SER A 198 N GLU A 2 SHEET 3 AA2 4 ALA A 71 ARG A 80 -1 N HIS A 72 O PHE A 197 SHEET 4 AA2 4 ASN A 164 PHE A 170 -1 O ASN A 164 N PHE A 77 SHEET 1 AA3 4 LEU A 17 THR A 18 0 SHEET 2 AA3 4 ASN A 56 GLN A 59 -1 O GLN A 59 N LEU A 17 SHEET 3 AA3 4 GLY A 177 ASP A 184 -1 O PHE A 182 N LEU A 58 SHEET 4 AA3 4 VAL A 63 GLU A 64 -1 N VAL A 63 O PHE A 178 SHEET 1 AA4 5 LEU A 17 THR A 18 0 SHEET 2 AA4 5 ASN A 56 GLN A 59 -1 O GLN A 59 N LEU A 17 SHEET 3 AA4 5 GLY A 177 ASP A 184 -1 O PHE A 182 N LEU A 58 SHEET 4 AA4 5 THR A 95 ALA A 103 -1 N ARG A 101 O TYR A 179 SHEET 5 AA4 5 THR A 121 ALA A 127 -1 O ILE A 126 N PHE A 96 SHEET 1 AA5 3 VAL A 204 ARG A 206 0 SHEET 2 AA5 3 ALA A 209 PHE A 211 -1 O PHE A 211 N VAL A 204 SHEET 3 AA5 3 THR A 230 CYS A 231 -1 O THR A 230 N SER A 210 SHEET 1 AA6 3 VAL A 225 VAL A 228 0 SHEET 2 AA6 3 ARG A 252 CYS A 255 -1 O CYS A 255 N VAL A 225 SHEET 3 AA6 3 TRP A 261 VAL A 265 -1 O VAL A 265 N ARG A 252 SHEET 1 AA7 2 ALA A 235 GLU A 236 0 SHEET 2 AA7 2 ARG A 269 CYS A 270 -1 O ARG A 269 N GLU A 236 SHEET 1 AA8 2 TYR A 274 ALA A 277 0 SHEET 2 AA8 2 ALA A 282 ALA A 285 -1 O GLN A 284 N GLN A 275 SHEET 1 AA9 2 LEU A 290 TYR A 291 0 SHEET 2 AA9 2 SER A 301 PRO A 302 -1 O SER A 301 N TYR A 291 SHEET 1 AB1 3 GLN A 343 VAL A 349 0 SHEET 2 AB1 3 LEU A 354 ARG A 359 -1 O HIS A 357 N TRP A 346 SHEET 3 AB1 3 ARG A 413 VAL A 416 -1 O VAL A 416 N LEU A 354 SHEET 1 AB2 3 HIS A 394 ARG A 395 0 SHEET 2 AB2 3 LEU A 371 GLU A 378 -1 N GLU A 378 O HIS A 394 SHEET 3 AB2 3 ARG A 407 LEU A 409 -1 O LEU A 409 N PHE A 372 SHEET 1 AB3 4 HIS A 394 ARG A 395 0 SHEET 2 AB3 4 LEU A 371 GLU A 378 -1 N GLU A 378 O HIS A 394 SHEET 3 AB3 4 TYR A 425 VAL A 432 -1 O GLN A 430 N ASN A 373 SHEET 4 AB3 4 ALA A 445 VAL A 450 -1 O ALA A 446 N VAL A 429 SSBOND 1 CYS A 43 CYS A 188 1555 1555 2.02 SSBOND 2 CYS A 82 CYS A 92 1555 1555 2.03 SSBOND 3 CYS A 201 CYS A 255 1555 1555 2.02 SSBOND 4 CYS A 231 CYS A 268 1555 1555 2.05 SSBOND 5 CYS A 270 CYS A 283 1555 1555 2.02 SSBOND 6 CYS A 286 CYS A 300 1555 1555 2.04 SSBOND 7 CYS A 303 CYS A 317 1555 1555 2.03 SSBOND 8 CYS A 319 CYS A 335 1555 1555 2.01 SSBOND 9 CYS A 376 CYS A 396 1555 1555 2.01 SSBOND 10 CYS A 379 CYS A 393 1555 1555 2.04 LINK ND2 ASN A 449 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 CRYST1 105.310 105.310 188.724 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005299 0.00000