HEADER LIGASE 25-SEP-20 7K86 TITLE CRYSTAL STRUCTURE OF GLUTAMYL-TRNA SYNTHETASE (GLTX) FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: STMAA.01187.B.B1; COMPND 5 SYNONYM: GLUTAMYL-TRNA SYNTHETASE,GLURS; COMPND 6 EC: 6.1.1.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: GLTX, SMLT1441; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: STMAA.01187.B.B1 KEYWDS SSGCID, STENOTROPHOMONAS MALTOPHILIA K279A, STENOTROPHOMONAS, GLTX, KEYWDS 2 GLUTAMYL-TRNA SYNTHETASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7K86 1 REMARK REVDAT 1 07-OCT-20 7K86 0 JRNL AUTH D.M.DRANOW,D.R.DAVIES,P.S.HORANYI,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF GLUTAMYL-TRNA SYNTHETASE (GLTX) FROM JRNL TITL 2 STENOTROPHOMONAS MALTOPHILIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 71253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2600 - 4.8200 0.99 5496 135 0.1529 0.2006 REMARK 3 2 4.8200 - 3.8200 1.00 5404 142 0.1440 0.1656 REMARK 3 3 3.8200 - 3.3400 1.00 5349 166 0.1797 0.2144 REMARK 3 4 3.3400 - 3.0400 1.00 5365 142 0.1972 0.2562 REMARK 3 5 3.0400 - 2.8200 1.00 5323 151 0.2084 0.2406 REMARK 3 6 2.8200 - 2.6500 1.00 5343 138 0.2120 0.2659 REMARK 3 7 2.6500 - 2.5200 1.00 5342 151 0.2082 0.2719 REMARK 3 8 2.5200 - 2.4100 1.00 5330 133 0.2135 0.2883 REMARK 3 9 2.4100 - 2.3200 1.00 5305 148 0.2132 0.2992 REMARK 3 10 2.3200 - 2.2400 1.00 5303 153 0.2145 0.2994 REMARK 3 11 2.2400 - 2.1700 1.00 5318 146 0.2196 0.3062 REMARK 3 12 2.1700 - 2.1100 1.00 5319 147 0.2426 0.2858 REMARK 3 13 2.1100 - 2.0500 0.97 5167 137 0.2824 0.3226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7365 REMARK 3 ANGLE : 0.802 10016 REMARK 3 CHIRALITY : 0.046 1114 REMARK 3 PLANARITY : 0.005 1323 REMARK 3 DIHEDRAL : 17.489 2700 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3956 -0.4791 -2.2134 REMARK 3 T TENSOR REMARK 3 T11: 0.3608 T22: 0.4197 REMARK 3 T33: 0.3396 T12: -0.0075 REMARK 3 T13: 0.0431 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.3487 L22: 0.8828 REMARK 3 L33: 6.8392 L12: -0.3910 REMARK 3 L13: -0.1087 L23: 0.8426 REMARK 3 S TENSOR REMARK 3 S11: 0.1827 S12: 0.3733 S13: 0.1484 REMARK 3 S21: -0.2949 S22: -0.0905 S23: -0.0407 REMARK 3 S31: -0.2516 S32: -0.5369 S33: -0.0760 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4699 6.4757 37.0684 REMARK 3 T TENSOR REMARK 3 T11: 0.3581 T22: 0.2784 REMARK 3 T33: 0.4585 T12: -0.0174 REMARK 3 T13: 0.0370 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 3.4180 L22: 0.1947 REMARK 3 L33: 5.1094 L12: 0.4011 REMARK 3 L13: 3.6687 L23: 0.4815 REMARK 3 S TENSOR REMARK 3 S11: -0.1616 S12: 0.1400 S13: -0.0735 REMARK 3 S21: 0.0030 S22: 0.1349 S23: -0.1229 REMARK 3 S31: -0.1910 S32: 0.1516 S33: 0.0365 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3991 0.5136 39.5488 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.3451 REMARK 3 T33: 0.3334 T12: -0.0307 REMARK 3 T13: 0.0055 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 1.7432 L22: 1.4953 REMARK 3 L33: 4.0823 L12: 0.1439 REMARK 3 L13: 0.1415 L23: -1.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: -0.1322 S13: 0.1771 REMARK 3 S21: 0.2058 S22: -0.0790 S23: 0.0059 REMARK 3 S31: -0.2887 S32: 0.0505 S33: 0.0866 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2742 5.4678 -3.5769 REMARK 3 T TENSOR REMARK 3 T11: 0.5372 T22: 0.3823 REMARK 3 T33: 0.4544 T12: 0.0130 REMARK 3 T13: -0.1074 T23: 0.0721 REMARK 3 L TENSOR REMARK 3 L11: 3.8063 L22: 2.1584 REMARK 3 L33: 5.5426 L12: -0.7606 REMARK 3 L13: 2.6000 L23: -0.7251 REMARK 3 S TENSOR REMARK 3 S11: 0.4325 S12: 0.0461 S13: -0.5798 REMARK 3 S21: -0.4674 S22: -0.1041 S23: 0.1837 REMARK 3 S31: 0.5361 S32: -0.1862 S33: -0.3131 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000252068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71304 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 36.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.120 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.23 REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 5H4V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: STMAA.01187.B.B1.PW38726 AT 24 MG/ML REMARK 280 MIXED 1:1 WITH MCSG1(C5): 10%(W/V) PEG-3350, 0.2 M MAGENSIUM REMARK 280 ACETATE. TRAY: 313794C5. PUCK: XKU5-10., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.55500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 113 REMARK 465 ALA A 114 REMARK 465 ARG A 115 REMARK 465 GLN A 116 REMARK 465 THR A 242 REMARK 465 GLY A 243 REMARK 465 THR A 466 REMARK 465 ALA A 467 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 465 REMARK 465 THR B 466 REMARK 465 ALA B 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 116 CG CD OE1 NE2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 GLU B 451 CG CD OE1 OE2 REMARK 470 LYS B 455 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 616 O HOH B 735 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 637 O HOH B 735 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 96.86 -59.31 REMARK 500 GLU A 110 80.21 -33.19 REMARK 500 GLU A 147 175.36 121.36 REMARK 500 PRO A 439 -159.00 -75.81 REMARK 500 SER B 49 36.81 -88.02 REMARK 500 ASP B 135 137.22 -170.92 REMARK 500 THR B 242 31.30 -81.24 REMARK 500 PRO B 439 -151.56 -76.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 146 GLU A 147 149.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-STMAA.01187.B RELATED DB: TARGETTRACK DBREF 7K86 A 1 467 UNP B2FHI7 SYE_STRMK 1 467 DBREF 7K86 B 1 467 UNP B2FHI7 SYE_STRMK 1 467 SEQADV 7K86 MET A -7 UNP B2FHI7 INITIATING METHIONINE SEQADV 7K86 ALA A -6 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS A -5 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS A -4 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS A -3 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS A -2 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS A -1 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS A 0 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 MET B -7 UNP B2FHI7 INITIATING METHIONINE SEQADV 7K86 ALA B -6 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS B -5 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS B -4 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS B -3 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS B -2 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS B -1 UNP B2FHI7 EXPRESSION TAG SEQADV 7K86 HIS B 0 UNP B2FHI7 EXPRESSION TAG SEQRES 1 A 475 MET ALA HIS HIS HIS HIS HIS HIS MET THR CYS ARG THR SEQRES 2 A 475 ARG PHE ALA PRO SER PRO THR GLY TYR LEU HIS ILE GLY SEQRES 3 A 475 GLY ALA ARG THR ALA LEU TYR CYS TRP LEU GLU ALA ARG SEQRES 4 A 475 HIS ARG GLY GLY GLU PHE VAL LEU ARG ILE GLU ASP THR SEQRES 5 A 475 ASP ARG GLU ARG SER THR GLN GLY ALA ILE ASP ALA ILE SEQRES 6 A 475 LEU GLU ALA MET GLU TRP LEU GLY LEU ASP TYR ASP GLU SEQRES 7 A 475 GLY PRO ILE TYR GLN THR ASP ARG VAL ALA ARG TYR LEU SEQRES 8 A 475 GLU VAL ALA GLU GLN LEU VAL ALA ASP GLY LYS ALA TYR SEQRES 9 A 475 TYR ALA TYR GLU THR ARG GLU GLU LEU ASP ALA MET ARG SEQRES 10 A 475 GLU ALA ALA MET ALA ARG GLN GLU LYS PRO ARG TYR ASN SEQRES 11 A 475 GLY ALA ALA ARG ASP LEU GLY LEU PRO ARG ARG ASP ASP SEQRES 12 A 475 PRO ASN ARG VAL ILE ARG PHE LYS ASN PRO LEU GLU GLY SEQRES 13 A 475 THR VAL VAL PHE ASP ASP LEU ILE LYS GLY ARG ILE GLU SEQRES 14 A 475 ILE ALA ASN SER GLU LEU ASP ASP MET VAL ILE PHE ARG SEQRES 15 A 475 PRO ASP GLY TYR PRO THR TYR ASN PHE ALA VAL VAL VAL SEQRES 16 A 475 ASP ASP TRP ASP MET GLY ILE THR GLU VAL ILE ARG GLY SEQRES 17 A 475 ASP ASP HIS ILE ASN ASN THR PRO ARG GLN ILE ASN LEU SEQRES 18 A 475 TYR GLU GLY ILE GLY ALA PRO VAL PRO LYS PHE GLY HIS SEQRES 19 A 475 MET PRO MET ILE LEU ASP GLU GLN GLY ALA LYS LEU SER SEQRES 20 A 475 LYS ARG THR GLY ALA ALA ASP VAL MET GLN TYR LYS ASP SEQRES 21 A 475 ALA GLY TYR LEU PRO ASP ALA LEU LEU SER TYR LEU ALA SEQRES 22 A 475 ARG LEU GLY TRP SER HIS GLY ASP GLN GLU LEU PHE SER SEQRES 23 A 475 ARG GLN GLU LEU ILE GLU LEU PHE ASP VAL LYS ASP CYS SEQRES 24 A 475 ASN SER LYS ALA SER ARG LEU ASP MET ALA LYS LEU GLY SEQRES 25 A 475 TRP VAL ASN GLN HIS PHE LEU LYS THR GLU ASP VAL ALA SEQRES 26 A 475 ALA ILE VAL PRO HIS LEU VAL TYR GLN LEU GLN LYS LEU SEQRES 27 A 475 GLY LEU ASP VAL ALA ALA GLY PRO ALA PRO GLU ASP VAL SEQRES 28 A 475 VAL VAL ALA LEU ARG GLU ARG VAL GLN THR LEU LYS GLU SEQRES 29 A 475 MET ALA GLU LYS ALA VAL VAL TRP TYR GLN PRO LEU THR SEQRES 30 A 475 GLU TYR ASP GLU ALA ALA VAL ALA LYS HIS PHE LYS ALA SEQRES 31 A 475 GLY ALA GLU VAL ALA LEU GLY LYS ALA ARG GLU LEU LEU SEQRES 32 A 475 ALA ALA LEU PRO GLU TRP THR ALA GLU SER VAL GLY VAL SEQRES 33 A 475 ALA LEU HIS ASP ALA ALA ALA ALA LEU GLU ILE GLY MET SEQRES 34 A 475 GLY LYS VAL ALA GLN PRO LEU ARG VAL ALA ILE THR GLY SEQRES 35 A 475 THR GLN VAL SER PRO ASP ILE SER HIS THR VAL TYR LEU SEQRES 36 A 475 ALA GLY ARG GLU GLN ALA LEU LYS ARG ILE ASP VAL ALA SEQRES 37 A 475 ILE THR LYS VAL ALA THR ALA SEQRES 1 B 475 MET ALA HIS HIS HIS HIS HIS HIS MET THR CYS ARG THR SEQRES 2 B 475 ARG PHE ALA PRO SER PRO THR GLY TYR LEU HIS ILE GLY SEQRES 3 B 475 GLY ALA ARG THR ALA LEU TYR CYS TRP LEU GLU ALA ARG SEQRES 4 B 475 HIS ARG GLY GLY GLU PHE VAL LEU ARG ILE GLU ASP THR SEQRES 5 B 475 ASP ARG GLU ARG SER THR GLN GLY ALA ILE ASP ALA ILE SEQRES 6 B 475 LEU GLU ALA MET GLU TRP LEU GLY LEU ASP TYR ASP GLU SEQRES 7 B 475 GLY PRO ILE TYR GLN THR ASP ARG VAL ALA ARG TYR LEU SEQRES 8 B 475 GLU VAL ALA GLU GLN LEU VAL ALA ASP GLY LYS ALA TYR SEQRES 9 B 475 TYR ALA TYR GLU THR ARG GLU GLU LEU ASP ALA MET ARG SEQRES 10 B 475 GLU ALA ALA MET ALA ARG GLN GLU LYS PRO ARG TYR ASN SEQRES 11 B 475 GLY ALA ALA ARG ASP LEU GLY LEU PRO ARG ARG ASP ASP SEQRES 12 B 475 PRO ASN ARG VAL ILE ARG PHE LYS ASN PRO LEU GLU GLY SEQRES 13 B 475 THR VAL VAL PHE ASP ASP LEU ILE LYS GLY ARG ILE GLU SEQRES 14 B 475 ILE ALA ASN SER GLU LEU ASP ASP MET VAL ILE PHE ARG SEQRES 15 B 475 PRO ASP GLY TYR PRO THR TYR ASN PHE ALA VAL VAL VAL SEQRES 16 B 475 ASP ASP TRP ASP MET GLY ILE THR GLU VAL ILE ARG GLY SEQRES 17 B 475 ASP ASP HIS ILE ASN ASN THR PRO ARG GLN ILE ASN LEU SEQRES 18 B 475 TYR GLU GLY ILE GLY ALA PRO VAL PRO LYS PHE GLY HIS SEQRES 19 B 475 MET PRO MET ILE LEU ASP GLU GLN GLY ALA LYS LEU SER SEQRES 20 B 475 LYS ARG THR GLY ALA ALA ASP VAL MET GLN TYR LYS ASP SEQRES 21 B 475 ALA GLY TYR LEU PRO ASP ALA LEU LEU SER TYR LEU ALA SEQRES 22 B 475 ARG LEU GLY TRP SER HIS GLY ASP GLN GLU LEU PHE SER SEQRES 23 B 475 ARG GLN GLU LEU ILE GLU LEU PHE ASP VAL LYS ASP CYS SEQRES 24 B 475 ASN SER LYS ALA SER ARG LEU ASP MET ALA LYS LEU GLY SEQRES 25 B 475 TRP VAL ASN GLN HIS PHE LEU LYS THR GLU ASP VAL ALA SEQRES 26 B 475 ALA ILE VAL PRO HIS LEU VAL TYR GLN LEU GLN LYS LEU SEQRES 27 B 475 GLY LEU ASP VAL ALA ALA GLY PRO ALA PRO GLU ASP VAL SEQRES 28 B 475 VAL VAL ALA LEU ARG GLU ARG VAL GLN THR LEU LYS GLU SEQRES 29 B 475 MET ALA GLU LYS ALA VAL VAL TRP TYR GLN PRO LEU THR SEQRES 30 B 475 GLU TYR ASP GLU ALA ALA VAL ALA LYS HIS PHE LYS ALA SEQRES 31 B 475 GLY ALA GLU VAL ALA LEU GLY LYS ALA ARG GLU LEU LEU SEQRES 32 B 475 ALA ALA LEU PRO GLU TRP THR ALA GLU SER VAL GLY VAL SEQRES 33 B 475 ALA LEU HIS ASP ALA ALA ALA ALA LEU GLU ILE GLY MET SEQRES 34 B 475 GLY LYS VAL ALA GLN PRO LEU ARG VAL ALA ILE THR GLY SEQRES 35 B 475 THR GLN VAL SER PRO ASP ILE SER HIS THR VAL TYR LEU SEQRES 36 B 475 ALA GLY ARG GLU GLN ALA LEU LYS ARG ILE ASP VAL ALA SEQRES 37 B 475 ILE THR LYS VAL ALA THR ALA HET ACT A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET ACT B 501 4 HET EDO B 502 4 HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *379(H2 O) HELIX 1 AA1 HIS A 16 ARG A 33 1 18 HELIX 2 AA2 THR A 50 GLY A 65 1 16 HELIX 3 AA3 ARG A 78 ASP A 92 1 15 HELIX 4 AA4 THR A 101 MET A 108 1 8 HELIX 5 AA5 SER A 165 LEU A 167 5 3 HELIX 6 AA6 THR A 180 MET A 192 1 13 HELIX 7 AA7 ASP A 202 ASN A 205 5 4 HELIX 8 AA8 ASN A 206 GLY A 218 1 13 HELIX 9 AA9 ASP A 246 ALA A 253 1 8 HELIX 10 AB1 LEU A 256 TRP A 269 1 14 HELIX 11 AB2 SER A 278 PHE A 286 1 9 HELIX 12 AB3 ASP A 287 CYS A 291 5 5 HELIX 13 AB4 ASP A 299 GLU A 314 1 16 HELIX 14 AB5 ASP A 315 LEU A 330 1 16 HELIX 15 AB6 ALA A 339 ARG A 348 1 10 HELIX 16 AB7 THR A 353 VAL A 362 1 10 HELIX 17 AB8 VAL A 363 TYR A 365 5 3 HELIX 18 AB9 ASP A 372 PHE A 380 1 9 HELIX 19 AC1 GLY A 383 ALA A 397 1 15 HELIX 20 AC2 THR A 402 GLU A 418 1 17 HELIX 21 AC3 GLY A 420 GLY A 434 1 15 HELIX 22 AC4 ASP A 440 VAL A 464 1 25 HELIX 23 AC5 HIS B 16 ARG B 33 1 18 HELIX 24 AC6 THR B 50 LEU B 64 1 15 HELIX 25 AC7 ARG B 78 ASP B 92 1 15 HELIX 26 AC8 THR B 101 ARG B 115 1 15 HELIX 27 AC9 SER B 165 LEU B 167 5 3 HELIX 28 AD1 THR B 180 MET B 192 1 13 HELIX 29 AD2 ASP B 202 ASN B 205 5 4 HELIX 30 AD3 ASN B 206 GLY B 218 1 13 HELIX 31 AD4 ASP B 246 GLY B 254 1 9 HELIX 32 AD5 LEU B 256 TRP B 269 1 14 HELIX 33 AD6 SER B 278 PHE B 286 1 9 HELIX 34 AD7 ASP B 287 CYS B 291 5 5 HELIX 35 AD8 ASP B 299 GLU B 314 1 16 HELIX 36 AD9 ASP B 315 LEU B 330 1 16 HELIX 37 AE1 ALA B 339 ARG B 348 1 10 HELIX 38 AE2 THR B 353 VAL B 362 1 10 HELIX 39 AE3 VAL B 363 TYR B 365 5 3 HELIX 40 AE4 ASP B 372 PHE B 380 1 9 HELIX 41 AE5 GLY B 383 LEU B 398 1 16 HELIX 42 AE6 THR B 402 GLU B 418 1 17 HELIX 43 AE7 GLY B 420 GLY B 434 1 15 HELIX 44 AE8 ASP B 440 GLY B 449 1 10 HELIX 45 AE9 GLY B 449 VAL B 464 1 16 SHEET 1 AA1 3 ARG A 4 PHE A 7 0 SHEET 2 AA1 3 GLU A 36 ILE A 41 1 O ARG A 40 N PHE A 7 SHEET 3 AA1 3 GLU A 70 TYR A 74 1 O ILE A 73 N ILE A 41 SHEET 1 AA2 3 ALA A 95 ALA A 98 0 SHEET 2 AA2 3 VAL A 139 PHE A 142 -1 O ARG A 141 N TYR A 96 SHEET 3 AA2 3 VAL A 171 PHE A 173 -1 O ILE A 172 N ILE A 140 SHEET 1 AA3 2 THR A 149 ASP A 154 0 SHEET 2 AA3 2 GLY A 158 ALA A 163 -1 O GLY A 158 N ASP A 154 SHEET 1 AA4 2 GLU A 196 GLY A 200 0 SHEET 2 AA4 2 LYS A 223 MET A 227 1 O LYS A 223 N VAL A 197 SHEET 1 AA5 3 ARG B 4 PHE B 7 0 SHEET 2 AA5 3 GLU B 36 ILE B 41 1 O ARG B 40 N PHE B 7 SHEET 3 AA5 3 GLU B 70 TYR B 74 1 O ILE B 73 N ILE B 41 SHEET 1 AA6 3 ALA B 95 ALA B 98 0 SHEET 2 AA6 3 VAL B 139 PHE B 142 -1 O ARG B 141 N TYR B 96 SHEET 3 AA6 3 VAL B 171 PHE B 173 -1 O ILE B 172 N ILE B 140 SHEET 1 AA7 2 THR B 149 ASP B 154 0 SHEET 2 AA7 2 GLY B 158 ALA B 163 -1 O ILE B 160 N PHE B 152 SHEET 1 AA8 2 GLU B 196 GLY B 200 0 SHEET 2 AA8 2 LYS B 223 MET B 227 1 O LYS B 223 N VAL B 197 CISPEP 1 GLY A 71 PRO A 72 0 0.32 CISPEP 2 GLY B 71 PRO B 72 0 -4.14 SITE 1 AC1 6 ARG A 6 TYR A 181 VAL A 185 ARG A 199 SITE 2 AC1 6 HIS A 203 HOH A 679 SITE 1 AC2 3 TYR A 97 ARG A 138 ARG A 174 SITE 1 AC3 1 ASP A 290 SITE 1 AC4 3 TRP A 305 HIS A 309 LYS A 312 SITE 1 AC5 6 ARG B 6 TYR B 181 VAL B 185 ARG B 199 SITE 2 AC5 6 HIS B 203 HOH B 655 SITE 1 AC6 3 TYR B 97 ARG B 138 ARG B 174 CRYST1 85.400 69.110 103.820 90.00 110.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011710 0.000000 0.004277 0.00000 SCALE2 0.000000 0.014470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010254 0.00000