HEADER TRANSFERASE/DNA 28-SEP-20 7K96 TITLE HUMAN DNA POLYMERASE BETA TERNARY COMPLEX WITH TEMPLATING CYTOSINE AND TITLE 2 INCOMING DEOXYGUANOSINE DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)- COMPND 3 3'); COMPND 4 CHAIN: T; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'); COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*GP*TP*CP*GP*G)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DNA POLYMERASE BETA; COMPND 16 CHAIN: A; COMPND 17 EC: 2.7.7.7,4.2.99.-; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: POLB; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR, POLYMERASE, DNA BINDING PROTEIN, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.A.VARELA,B.D.FREUDENTHAL REVDAT 3 18-OCT-23 7K96 1 REMARK REVDAT 2 24-FEB-21 7K96 1 JRNL REVDAT 1 03-FEB-21 7K96 0 JRNL AUTH F.A.VARELA,B.D.FREUDENTHAL JRNL TITL MECHANISM OF DEOXYGUANOSINE DIPHOSPHATE INSERTION BY HUMAN JRNL TITL 2 DNA POLYMERASE BETA. JRNL REF BIOCHEMISTRY V. 60 373 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 33475337 JRNL DOI 10.1021/ACS.BIOCHEM.0C00847 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.3 REMARK 3 NUMBER OF REFLECTIONS : 23635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.0900 - 5.9000 0.98 1924 200 0.1564 0.2077 REMARK 3 2 5.9000 - 4.7000 0.98 1905 215 0.1467 0.1828 REMARK 3 3 4.7000 - 4.1100 0.98 1919 207 0.1364 0.2131 REMARK 3 4 4.1000 - 3.7300 0.98 1926 210 0.1416 0.1993 REMARK 3 5 3.7300 - 3.4600 0.98 1919 174 0.1609 0.2142 REMARK 3 6 3.4600 - 3.2600 0.97 1920 187 0.1729 0.2101 REMARK 3 7 3.2600 - 3.1000 0.96 1877 217 0.2072 0.2862 REMARK 3 8 3.1000 - 2.9600 0.91 1771 193 0.2287 0.4067 REMARK 3 9 2.9600 - 2.8500 0.86 1658 220 0.2435 0.3145 REMARK 3 10 2.8500 - 2.7500 0.80 1566 167 0.2417 0.3014 REMARK 3 11 2.7500 - 2.6600 0.71 1401 156 0.2408 0.3029 REMARK 3 12 2.6600 - 2.5900 0.66 1290 136 0.2415 0.3018 REMARK 3 13 2.5900 - 2.5200 0.60 1181 121 0.2415 0.2826 REMARK 3 14 2.5200 - 2.4600 0.57 1132 117 0.2279 0.3258 REMARK 3 15 2.4600 - 2.4000 0.52 974 114 0.2405 0.3071 REMARK 3 16 2.4000 - 2.3500 0.47 952 111 0.2467 0.2928 REMARK 3 17 2.3500 - 2.3100 0.45 835 102 0.2424 0.2799 REMARK 3 18 2.3100 - 2.2600 0.41 817 95 0.2601 0.3350 REMARK 3 19 2.2600 - 2.2200 0.37 709 72 0.2577 0.2825 REMARK 3 20 2.2200 - 2.1800 0.33 666 81 0.2614 0.3255 REMARK 3 21 2.1800 - 2.1500 0.28 559 50 0.2552 0.3742 REMARK 3 22 2.1500 - 2.1200 0.19 370 48 0.2616 0.3558 REMARK 3 23 2.1200 - 2.0800 0.06 108 14 0.2786 0.1812 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.293 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.025 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3438 REMARK 3 ANGLE : 1.112 4761 REMARK 3 CHIRALITY : 0.065 519 REMARK 3 PLANARITY : 0.007 505 REMARK 3 DIHEDRAL : 23.208 1351 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.0124 7.8017 14.8748 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1489 REMARK 3 T33: 0.1428 T12: -0.0347 REMARK 3 T13: -0.0024 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.6996 L22: 0.9667 REMARK 3 L33: 0.7506 L12: -0.8066 REMARK 3 L13: 0.0213 L23: 0.2046 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.1107 S13: 0.1165 REMARK 3 S21: -0.0960 S22: -0.0383 S23: -0.0759 REMARK 3 S31: -0.0299 S32: 0.0115 S33: 0.0112 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE, 350 MM SODIUM REMARK 280 CHLORIDE, 16-17% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 VAL A 303 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 5 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC T 16 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT P 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG P 7 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC P 8 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 49.68 -109.72 REMARK 500 CYS A 178 -138.88 -119.46 REMARK 500 ASN A 294 -168.93 -128.32 REMARK 500 SER A 334 40.00 -74.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA P 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG T 9 O6 REMARK 620 2 HOH T 217 O 85.8 REMARK 620 3 DG P 7 O6 69.7 118.4 REMARK 620 4 HOH P 203 O 123.0 151.2 76.1 REMARK 620 5 HOH P 204 O 114.1 68.8 71.7 95.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG P 9 OP1 REMARK 620 2 THR A 101 O 176.8 REMARK 620 3 VAL A 103 O 93.7 88.9 REMARK 620 4 ILE A 106 O 98.4 79.7 86.6 REMARK 620 5 HOH A 691 O 101.9 80.5 80.8 156.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC P 10 O3' REMARK 620 2 ASP A 190 OD1 160.7 REMARK 620 3 ASP A 190 OD2 148.0 50.9 REMARK 620 4 ASP A 192 OD1 84.8 88.3 113.0 REMARK 620 5 ASP A 256 OD2 65.4 132.8 87.3 90.1 REMARK 620 6 DGI A 516 O2A 94.4 68.1 109.5 94.8 158.8 REMARK 620 7 HOH A 661 O 85.4 96.2 82.7 162.2 99.2 71.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC D 3 OP1 REMARK 620 2 HOH D 106 O 82.9 REMARK 620 3 LYS A 60 O 175.2 98.6 REMARK 620 4 LEU A 62 O 92.4 166.3 87.1 REMARK 620 5 VAL A 65 O 84.0 97.1 91.3 95.3 REMARK 620 6 HOH A 709 O 87.7 80.0 97.1 86.9 171.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 507 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 90 O REMARK 620 2 ASP A 92 OD1 139.9 REMARK 620 3 HOH A 677 O 60.4 114.7 REMARK 620 4 HOH A 708 O 117.1 75.5 167.6 REMARK 620 5 HOH A 714 O 128.3 79.6 74.0 102.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 O REMARK 620 2 ASP A 190 OD1 69.0 REMARK 620 3 ASP A 192 OD2 90.0 93.6 REMARK 620 4 DGI A 516 O2B 137.2 150.7 98.3 REMARK 620 5 DGI A 516 O2A 140.3 71.5 88.6 82.1 REMARK 620 6 HOH A 627 O 100.0 76.9 162.5 84.1 74.5 REMARK 620 7 HOH A 635 O 60.4 129.4 87.6 78.0 159.0 109.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD2 REMARK 620 2 HOH A 668 O 93.0 REMARK 620 3 HOH A 681 O 81.2 96.3 REMARK 620 4 HOH A 718 O 88.4 102.6 158.9 REMARK 620 N 1 2 3 DBREF 7K96 T 1 16 PDB 7K96 7K96 1 16 DBREF 7K96 P 1 10 PDB 7K96 7K96 1 10 DBREF 7K96 D 1 5 PDB 7K96 7K96 1 5 DBREF 7K96 A 1 335 UNP P06746 DPOLB_HUMAN 1 335 SEQRES 1 T 16 DC DC DG DA DC DC DG DC DG DC DA DT DC SEQRES 2 T 16 DA DG DC SEQRES 1 P 10 DG DC DT DG DA DT DG DC DG DC SEQRES 1 D 5 DG DT DC DG DG SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HET CL T 101 1 HET NA P 101 1 HET EDO A 501 4 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET NA A 505 1 HET NA A 506 1 HET NA A 507 1 HET CL A 508 1 HET CL A 509 1 HET CL A 510 1 HET CL A 511 1 HET CL A 512 1 HET CL A 513 1 HET CL A 514 1 HET CL A 515 1 HET DGI A 516 27 HET EDO A 517 4 HET EDO A 518 4 HET EDO A 519 4 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM DGI 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 5 CL 9(CL 1-) FORMUL 6 NA 4(NA 1+) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 8 CA 3(CA 2+) FORMUL 22 DGI C10 H15 N5 O10 P2 FORMUL 26 HOH *162(H2 O) HELIX 1 AA1 ASN A 12 VAL A 29 1 18 HELIX 2 AA2 ALA A 32 TYR A 49 1 18 HELIX 3 AA3 SER A 55 LYS A 61 1 7 HELIX 4 AA4 GLY A 66 GLY A 80 1 15 HELIX 5 AA5 LEU A 82 ASP A 91 1 10 HELIX 6 AA6 ASP A 91 THR A 101 1 11 HELIX 7 AA7 GLY A 107 GLU A 117 1 11 HELIX 8 AA8 THR A 121 ASN A 128 1 8 HELIX 9 AA9 GLU A 129 LEU A 132 5 4 HELIX 10 AB1 ASN A 133 TYR A 142 1 10 HELIX 11 AB2 TYR A 142 GLU A 147 1 6 HELIX 12 AB3 ARG A 152 ASP A 170 1 19 HELIX 13 AB4 CYS A 178 ARG A 183 1 6 HELIX 14 AB5 LYS A 209 VAL A 221 1 13 HELIX 15 AB6 PRO A 261 ASP A 263 5 3 HELIX 16 AB7 GLN A 264 GLY A 274 1 11 HELIX 17 AB8 SER A 275 LYS A 289 1 15 HELIX 18 AB9 SER A 315 ILE A 323 1 9 HELIX 19 AC1 GLU A 329 ARG A 333 5 5 SHEET 1 AA1 2 ILE A 150 PRO A 151 0 SHEET 2 AA1 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 AA2 5 ILE A 174 VAL A 177 0 SHEET 2 AA2 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 AA2 5 ARG A 253 LEU A 259 1 O ASP A 256 N VAL A 193 SHEET 4 AA2 5 LYS A 234 CYS A 239 -1 N PHE A 235 O ILE A 257 SHEET 5 AA2 5 ILE A 224 LYS A 230 -1 N THR A 225 O VAL A 238 SHEET 1 AA3 2 PHE A 291 ILE A 293 0 SHEET 2 AA3 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O6 DG T 9 NA NA P 101 1555 1555 2.88 LINK O HOH T 217 NA NA P 101 1555 1555 2.40 LINK O6 DG P 7 NA NA P 101 1555 1555 2.83 LINK OP1 DG P 9 NA NA A 505 1555 1555 2.25 LINK O3' DC P 10 CA CA A 503 1555 1555 2.58 LINK NA NA P 101 O HOH P 203 1555 1555 2.93 LINK NA NA P 101 O HOH P 204 1555 1555 3.18 LINK OP1 DC D 3 NA NA A 506 1555 1555 2.84 LINK O HOH D 106 NA NA A 506 1555 1555 2.37 LINK O LYS A 60 NA NA A 506 1555 1555 2.29 LINK O LEU A 62 NA NA A 506 1555 1555 2.55 LINK O VAL A 65 NA NA A 506 1555 1555 2.45 LINK O GLN A 90 NA NA A 507 1555 1555 2.64 LINK OD1 ASP A 92 NA NA A 507 1555 1555 2.63 LINK O THR A 101 NA NA A 505 1555 1555 2.44 LINK O VAL A 103 NA NA A 505 1555 1555 2.50 LINK O ILE A 106 NA NA A 505 1555 1555 2.69 LINK O ASP A 190 CA CA A 502 1555 1555 2.98 LINK OD1 ASP A 190 CA CA A 502 1555 1555 2.41 LINK OD1 ASP A 190 CA CA A 503 1555 1555 2.66 LINK OD2 ASP A 190 CA CA A 503 1555 1555 2.37 LINK OD2 ASP A 192 CA CA A 502 1555 1555 2.43 LINK OD1 ASP A 192 CA CA A 503 1555 1555 2.36 LINK OD2 ASP A 256 CA CA A 503 1555 1555 2.53 LINK OD2 ASP A 276 CA CA A 504 1555 1555 2.41 LINK CA CA A 502 O2B DGI A 516 1555 1555 2.39 LINK CA CA A 502 O2A DGI A 516 1555 1555 2.61 LINK CA CA A 502 O HOH A 627 1555 1555 2.57 LINK CA CA A 502 O HOH A 635 1555 1555 2.41 LINK CA CA A 503 O2A DGI A 516 1555 1555 2.58 LINK CA CA A 503 O HOH A 661 1555 1555 2.53 LINK CA CA A 504 O HOH A 668 1555 1555 2.58 LINK CA CA A 504 O HOH A 681 1555 1555 2.14 LINK CA CA A 504 O HOH A 718 1555 1555 2.57 LINK NA NA A 505 O HOH A 691 1555 1555 2.27 LINK NA NA A 506 O HOH A 709 1555 1555 2.43 LINK NA NA A 507 O HOH A 677 1555 1555 3.16 LINK NA NA A 507 O HOH A 708 1555 1555 2.65 LINK NA NA A 507 O HOH A 714 1555 1555 2.64 CISPEP 1 GLY A 274 SER A 275 0 2.40 CRYST1 50.800 80.400 55.500 90.00 107.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019685 0.000000 0.006358 0.00000 SCALE2 0.000000 0.012438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018935 0.00000