data_7K9I # _entry.id 7K9I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7K9I pdb_00007k9i 10.2210/pdb7k9i/pdb WWPDB D_1000251986 ? ? EMDB EMD-22749 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-22749 'associated EM volume' TargetTrack . IDP51002 unspecified EMDB . EMD-22748 'other EM volume' EMDB . EMD-22750 'other EM volume' EMDB . EMD-22751 'other EM volume' EMDB . EMD-22752 'other EM volume' EMDB . EMD-22753 'other EM volume' PDB . 7K9H unspecified PDB . 7K9J unspecified PDB . 7K9K unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7K9I _pdbx_database_status.recvd_initial_deposition_date 2020-09-29 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Errico, J.M.' 1 0000-0002-4452-8152 'Fremont, D.H.' 2 0000-0002-8544-2689 'Center for Structural Genomics of Infectious Diseases (CSGID)' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 37 _citation.language ? _citation.page_first 109881 _citation.page_last 109881 _citation.title 'Structural mechanism of SARS-CoV-2 neutralization by two murine antibodies targeting the RBD.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2021.109881 _citation.pdbx_database_id_PubMed 34655519 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Errico, J.M.' 1 ? primary 'Zhao, H.' 2 ? primary 'Chen, R.E.' 3 ? primary 'Liu, Z.' 4 ? primary 'Case, J.B.' 5 ? primary 'Ma, M.' 6 ? primary 'Schmitz, A.J.' 7 ? primary 'Rau, M.J.' 8 ? primary 'Fitzpatrick, J.A.J.' 9 ? primary 'Shi, P.Y.' 10 ? primary 'Diamond, M.S.' 11 ? primary 'Whelan, S.P.J.' 12 ? primary 'Ellebedy, A.H.' 13 ? primary 'Fremont, D.H.' 14 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7K9I _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 21873.496 1 ? ? 'receptor binding domain (UNP residues 333-527)' ? 2 polymer man '2B04 heavy chain' 13162.778 1 ? ? ? ? 3 polymer man '2B04 light chain' 11530.766 1 ? ? ? ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein,Spike glycoprotein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; A IDP51002 2 'polypeptide(L)' no no ;QVQLKQSGPGLVAPSQSLSITCTVSGFSLINYAISWVRQPPGKGLEWLGVIWTGGGTNYNSALKSRLSISKDNSKSQVFL KMNSLQTDDTARYYCARKDYYGRYYGMDYWGQGTSVTVS ; ;QVQLKQSGPGLVAPSQSLSITCTVSGFSLINYAISWVRQPPGKGLEWLGVIWTGGGTNYNSALKSRLSISKDNSKSQVFL KMNSLQTDDTARYYCARKDYYGRYYGMDYWGQGTSVTVS ; H ? 3 'polypeptide(L)' no no ;QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGA QTEDEAIYFCALWYNNHWVFGGGTKLTVL ; ;QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGA QTEDEAIYFCALWYNNHWVFGGGTKLTVL ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ASN n 1 3 LEU n 1 4 CYS n 1 5 PRO n 1 6 PHE n 1 7 GLY n 1 8 GLU n 1 9 VAL n 1 10 PHE n 1 11 ASN n 1 12 ALA n 1 13 THR n 1 14 ARG n 1 15 PHE n 1 16 ALA n 1 17 SER n 1 18 VAL n 1 19 TYR n 1 20 ALA n 1 21 TRP n 1 22 ASN n 1 23 ARG n 1 24 LYS n 1 25 ARG n 1 26 ILE n 1 27 SER n 1 28 ASN n 1 29 CYS n 1 30 VAL n 1 31 ALA n 1 32 ASP n 1 33 TYR n 1 34 SER n 1 35 VAL n 1 36 LEU n 1 37 TYR n 1 38 ASN n 1 39 SER n 1 40 ALA n 1 41 SER n 1 42 PHE n 1 43 SER n 1 44 THR n 1 45 PHE n 1 46 LYS n 1 47 CYS n 1 48 TYR n 1 49 GLY n 1 50 VAL n 1 51 SER n 1 52 PRO n 1 53 THR n 1 54 LYS n 1 55 LEU n 1 56 ASN n 1 57 ASP n 1 58 LEU n 1 59 CYS n 1 60 PHE n 1 61 THR n 1 62 ASN n 1 63 VAL n 1 64 TYR n 1 65 ALA n 1 66 ASP n 1 67 SER n 1 68 PHE n 1 69 VAL n 1 70 ILE n 1 71 ARG n 1 72 GLY n 1 73 ASP n 1 74 GLU n 1 75 VAL n 1 76 ARG n 1 77 GLN n 1 78 ILE n 1 79 ALA n 1 80 PRO n 1 81 GLY n 1 82 GLN n 1 83 THR n 1 84 GLY n 1 85 LYS n 1 86 ILE n 1 87 ALA n 1 88 ASP n 1 89 TYR n 1 90 ASN n 1 91 TYR n 1 92 LYS n 1 93 LEU n 1 94 PRO n 1 95 ASP n 1 96 ASP n 1 97 PHE n 1 98 THR n 1 99 GLY n 1 100 CYS n 1 101 VAL n 1 102 ILE n 1 103 ALA n 1 104 TRP n 1 105 ASN n 1 106 SER n 1 107 ASN n 1 108 ASN n 1 109 LEU n 1 110 ASP n 1 111 SER n 1 112 LYS n 1 113 VAL n 1 114 GLY n 1 115 GLY n 1 116 ASN n 1 117 TYR n 1 118 ASN n 1 119 TYR n 1 120 LEU n 1 121 TYR n 1 122 ARG n 1 123 LEU n 1 124 PHE n 1 125 ARG n 1 126 LYS n 1 127 SER n 1 128 ASN n 1 129 LEU n 1 130 LYS n 1 131 PRO n 1 132 PHE n 1 133 GLU n 1 134 ARG n 1 135 ASP n 1 136 ILE n 1 137 SER n 1 138 THR n 1 139 GLU n 1 140 ILE n 1 141 TYR n 1 142 GLN n 1 143 ALA n 1 144 GLY n 1 145 SER n 1 146 THR n 1 147 PRO n 1 148 CYS n 1 149 ASN n 1 150 GLY n 1 151 VAL n 1 152 GLU n 1 153 GLY n 1 154 PHE n 1 155 ASN n 1 156 CYS n 1 157 TYR n 1 158 PHE n 1 159 PRO n 1 160 LEU n 1 161 GLN n 1 162 SER n 1 163 TYR n 1 164 GLY n 1 165 PHE n 1 166 GLN n 1 167 PRO n 1 168 THR n 1 169 ASN n 1 170 GLY n 1 171 VAL n 1 172 GLY n 1 173 TYR n 1 174 GLN n 1 175 PRO n 1 176 TYR n 1 177 ARG n 1 178 VAL n 1 179 VAL n 1 180 VAL n 1 181 LEU n 1 182 SER n 1 183 PHE n 1 184 GLU n 1 185 LEU n 1 186 LEU n 1 187 HIS n 1 188 ALA n 1 189 PRO n 1 190 ALA n 1 191 THR n 1 192 VAL n 1 193 CYS n 1 194 GLY n 1 195 PRO n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 LYS n 2 6 GLN n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 ALA n 2 14 PRO n 2 15 SER n 2 16 GLN n 2 17 SER n 2 18 LEU n 2 19 SER n 2 20 ILE n 2 21 THR n 2 22 CYS n 2 23 THR n 2 24 VAL n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 SER n 2 29 LEU n 2 30 ILE n 2 31 ASN n 2 32 TYR n 2 33 ALA n 2 34 ILE n 2 35 SER n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 PRO n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 LEU n 2 49 GLY n 2 50 VAL n 2 51 ILE n 2 52 TRP n 2 53 THR n 2 54 GLY n 2 55 GLY n 2 56 GLY n 2 57 THR n 2 58 ASN n 2 59 TYR n 2 60 ASN n 2 61 SER n 2 62 ALA n 2 63 LEU n 2 64 LYS n 2 65 SER n 2 66 ARG n 2 67 LEU n 2 68 SER n 2 69 ILE n 2 70 SER n 2 71 LYS n 2 72 ASP n 2 73 ASN n 2 74 SER n 2 75 LYS n 2 76 SER n 2 77 GLN n 2 78 VAL n 2 79 PHE n 2 80 LEU n 2 81 LYS n 2 82 MET n 2 83 ASN n 2 84 SER n 2 85 LEU n 2 86 GLN n 2 87 THR n 2 88 ASP n 2 89 ASP n 2 90 THR n 2 91 ALA n 2 92 ARG n 2 93 TYR n 2 94 TYR n 2 95 CYS n 2 96 ALA n 2 97 ARG n 2 98 LYS n 2 99 ASP n 2 100 TYR n 2 101 TYR n 2 102 GLY n 2 103 ARG n 2 104 TYR n 2 105 TYR n 2 106 GLY n 2 107 MET n 2 108 ASP n 2 109 TYR n 2 110 TRP n 2 111 GLY n 2 112 GLN n 2 113 GLY n 2 114 THR n 2 115 SER n 2 116 VAL n 2 117 THR n 2 118 VAL n 2 119 SER n 3 1 GLN n 3 2 ALA n 3 3 VAL n 3 4 VAL n 3 5 THR n 3 6 GLN n 3 7 GLU n 3 8 SER n 3 9 ALA n 3 10 LEU n 3 11 THR n 3 12 THR n 3 13 SER n 3 14 PRO n 3 15 GLY n 3 16 GLU n 3 17 THR n 3 18 VAL n 3 19 THR n 3 20 LEU n 3 21 THR n 3 22 CYS n 3 23 ARG n 3 24 SER n 3 25 SER n 3 26 THR n 3 27 GLY n 3 28 ALA n 3 29 VAL n 3 30 THR n 3 31 THR n 3 32 SER n 3 33 ASN n 3 34 TYR n 3 35 ALA n 3 36 ASN n 3 37 TRP n 3 38 VAL n 3 39 GLN n 3 40 GLU n 3 41 LYS n 3 42 PRO n 3 43 ASP n 3 44 HIS n 3 45 LEU n 3 46 PHE n 3 47 THR n 3 48 GLY n 3 49 LEU n 3 50 ILE n 3 51 GLY n 3 52 GLY n 3 53 THR n 3 54 ASN n 3 55 ASN n 3 56 ARG n 3 57 ALA n 3 58 PRO n 3 59 GLY n 3 60 VAL n 3 61 PRO n 3 62 ALA n 3 63 ARG n 3 64 PHE n 3 65 SER n 3 66 GLY n 3 67 SER n 3 68 LEU n 3 69 ILE n 3 70 GLY n 3 71 ASP n 3 72 LYS n 3 73 ALA n 3 74 ALA n 3 75 LEU n 3 76 THR n 3 77 ILE n 3 78 THR n 3 79 GLY n 3 80 ALA n 3 81 GLN n 3 82 THR n 3 83 GLU n 3 84 ASP n 3 85 GLU n 3 86 ALA n 3 87 ILE n 3 88 TYR n 3 89 PHE n 3 90 CYS n 3 91 ALA n 3 92 LEU n 3 93 TRP n 3 94 TYR n 3 95 ASN n 3 96 ASN n 3 97 HIS n 3 98 TRP n 3 99 VAL n 3 100 PHE n 3 101 GLY n 3 102 GLY n 3 103 GLY n 3 104 THR n 3 105 LYS n 3 106 LEU n 3 107 THR n 3 108 VAL n 3 109 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 195 2019-nCoV ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 119 Mouse ? ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 109 Mouse ? ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; 333 2 PDB 7K9I 7K9I ? 2 ? 1 3 PDB 7K9I 7K9I ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7K9I A 1 ? 195 ? P0DTC2 333 ? 527 ? 333 527 2 2 7K9I H 1 ? 119 ? 7K9I 1 ? 119 ? 1 119 3 3 7K9I L 1 ? 109 ? 7K9I 1 ? 109 ? 1 109 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7K9I _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 103.00 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7K9I _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 3284 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.815 ? 4465 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 7.018 ? 474 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.049 ? 493 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 565 ? f_plane_restr ? ? # _struct.entry_id 7K9I _struct.title 'SARS-CoV-2 Spike RBD in complex with neutralizing Fab 2B04 (local refinement)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7K9I _struct_keywords.text ;Complex, Neutralizing antibody, ACE2-competitive, Receptor-binding domain, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, VIRAL PROTEIN-IMMUNE SYSTEM complex ; _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 5 ? ASN A 11 ? PRO A 337 ASN A 343 1 ? 7 HELX_P HELX_P2 AA2 ASP A 32 ? SER A 39 ? ASP A 364 SER A 371 1 ? 8 HELX_P HELX_P3 AA3 THR A 53 ? ASP A 57 ? THR A 385 ASP A 389 5 ? 5 HELX_P HELX_P4 AA4 ASP A 73 ? ILE A 78 ? ASP A 405 ILE A 410 5 ? 6 HELX_P HELX_P5 AA5 GLY A 84 ? ASN A 90 ? GLY A 416 ASN A 422 1 ? 7 HELX_P HELX_P6 AA6 GLY A 170 ? TYR A 173 ? GLY A 502 TYR A 505 5 ? 4 HELX_P HELX_P7 AA7 GLN B 86 ? THR B 90 ? GLN H 86 THR H 90 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 336 A CYS 361 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 193 SG ? ? A CYS 391 A CYS 525 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf4 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 156 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 95 SG ? ? H CYS 22 H CYS 95 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf6 disulf ? ? C CYS 22 SG ? ? ? 1_555 C CYS 90 SG ? ? L CYS 22 L CYS 90 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 11 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 343 A NAG 601 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 4 ? AA8 ? 5 ? AA9 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 22 ? ILE A 26 ? ASN A 354 ILE A 358 AA1 2 VAL A 63 ? ARG A 71 ? VAL A 395 ARG A 403 AA1 3 PRO A 175 ? SER A 182 ? PRO A 507 SER A 514 AA1 4 GLY A 99 ? ASN A 105 ? GLY A 431 ASN A 437 AA1 5 THR A 44 ? CYS A 47 ? THR A 376 CYS A 379 AA2 1 CYS A 29 ? VAL A 30 ? CYS A 361 VAL A 362 AA2 2 VAL A 192 ? CYS A 193 ? VAL A 524 CYS A 525 AA3 1 LEU A 120 ? ARG A 122 ? LEU A 452 ARG A 454 AA3 2 LEU A 160 ? SER A 162 ? LEU A 492 SER A 494 AA4 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7 AA4 2 SER B 19 ? SER B 25 ? SER H 19 SER H 25 AA4 3 GLN B 77 ? MET B 82 ? GLN H 77 MET H 82 AA4 4 LEU B 67 ? ASP B 72 ? LEU H 67 ASP H 72 AA5 1 THR B 57 ? TYR B 59 ? THR H 57 TYR H 59 AA5 2 GLU B 46 ? ILE B 51 ? GLU H 46 ILE H 51 AA5 3 ALA B 33 ? GLN B 39 ? ALA H 33 GLN H 39 AA5 4 ALA B 91 ? LYS B 98 ? ALA H 91 LYS H 98 AA5 5 MET B 107 ? TRP B 110 ? MET H 107 TRP H 110 AA6 1 THR B 57 ? TYR B 59 ? THR H 57 TYR H 59 AA6 2 GLU B 46 ? ILE B 51 ? GLU H 46 ILE H 51 AA6 3 ALA B 33 ? GLN B 39 ? ALA H 33 GLN H 39 AA6 4 ALA B 91 ? LYS B 98 ? ALA H 91 LYS H 98 AA6 5 THR B 114 ? VAL B 116 ? THR H 114 VAL H 116 AA7 1 THR C 5 ? GLN C 6 ? THR L 5 GLN L 6 AA7 2 VAL C 18 ? ARG C 23 ? VAL L 18 ARG L 23 AA7 3 ALA C 73 ? ILE C 77 ? ALA L 73 ILE L 77 AA7 4 PHE C 64 ? SER C 67 ? PHE L 64 SER L 67 AA8 1 ASN C 55 ? ARG C 56 ? ASN L 55 ARG L 56 AA8 2 LEU C 45 ? GLY C 51 ? LEU L 45 GLY L 51 AA8 3 ALA C 35 ? LYS C 41 ? ALA L 35 LYS L 41 AA8 4 ILE C 87 ? TRP C 93 ? ILE L 87 TRP L 93 AA8 5 TRP C 98 ? PHE C 100 ? TRP L 98 PHE L 100 AA9 1 ASN C 55 ? ARG C 56 ? ASN L 55 ARG L 56 AA9 2 LEU C 45 ? GLY C 51 ? LEU L 45 GLY L 51 AA9 3 ALA C 35 ? LYS C 41 ? ALA L 35 LYS L 41 AA9 4 ILE C 87 ? TRP C 93 ? ILE L 87 TRP L 93 AA9 5 THR C 104 ? LYS C 105 ? THR L 104 LYS L 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 24 ? N LYS A 356 O ALA A 65 ? O ALA A 397 AA1 2 3 N ILE A 70 ? N ILE A 402 O TYR A 176 ? O TYR A 508 AA1 3 4 O VAL A 179 ? O VAL A 511 N ILE A 102 ? N ILE A 434 AA1 4 5 O VAL A 101 ? O VAL A 433 N LYS A 46 ? N LYS A 378 AA2 1 2 N CYS A 29 ? N CYS A 361 O CYS A 193 ? O CYS A 525 AA3 1 2 N TYR A 121 ? N TYR A 453 O GLN A 161 ? O GLN A 493 AA4 1 2 N LYS B 5 ? N LYS H 5 O THR B 23 ? O THR H 23 AA4 2 3 N CYS B 22 ? N CYS H 22 O VAL B 78 ? O VAL H 78 AA4 3 4 O PHE B 79 ? O PHE H 79 N SER B 70 ? N SER H 70 AA5 1 2 O ASN B 58 ? O ASN H 58 N VAL B 50 ? N VAL H 50 AA5 2 3 O LEU B 48 ? O LEU H 48 N TRP B 36 ? N TRP H 36 AA5 3 4 N ALA B 33 ? N ALA H 33 O LYS B 98 ? O LYS H 98 AA5 4 5 N ARG B 97 ? N ARG H 97 O TYR B 109 ? O TYR H 109 AA6 1 2 O ASN B 58 ? O ASN H 58 N VAL B 50 ? N VAL H 50 AA6 2 3 O LEU B 48 ? O LEU H 48 N TRP B 36 ? N TRP H 36 AA6 3 4 N ALA B 33 ? N ALA H 33 O LYS B 98 ? O LYS H 98 AA6 4 5 N ALA B 91 ? N ALA H 91 O VAL B 116 ? O VAL H 116 AA7 1 2 N THR C 5 ? N THR L 5 O ARG C 23 ? O ARG L 23 AA7 2 3 N CYS C 22 ? N CYS L 22 O ALA C 73 ? O ALA L 73 AA7 3 4 O THR C 76 ? O THR L 76 N SER C 65 ? N SER L 65 AA8 1 2 O ASN C 55 ? O ASN L 55 N GLY C 51 ? N GLY L 51 AA8 2 3 O LEU C 49 ? O LEU L 49 N TRP C 37 ? N TRP L 37 AA8 3 4 N GLU C 40 ? N GLU L 40 O ILE C 87 ? O ILE L 87 AA8 4 5 N LEU C 92 ? N LEU L 92 O VAL C 99 ? O VAL L 99 AA9 1 2 O ASN C 55 ? O ASN L 55 N GLY C 51 ? N GLY L 51 AA9 2 3 O LEU C 49 ? O LEU L 49 N TRP C 37 ? N TRP L 37 AA9 3 4 N GLU C 40 ? N GLU L 40 O ILE C 87 ? O ILE L 87 AA9 4 5 N TYR C 88 ? N TYR L 88 O THR C 104 ? O THR L 104 # _atom_sites.entry_id 7K9I _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 333 333 THR THR A . n A 1 2 ASN 2 334 334 ASN ASN A . n A 1 3 LEU 3 335 335 LEU LEU A . n A 1 4 CYS 4 336 336 CYS CYS A . n A 1 5 PRO 5 337 337 PRO PRO A . n A 1 6 PHE 6 338 338 PHE PHE A . n A 1 7 GLY 7 339 339 GLY GLY A . n A 1 8 GLU 8 340 340 GLU GLU A . n A 1 9 VAL 9 341 341 VAL VAL A . n A 1 10 PHE 10 342 342 PHE PHE A . n A 1 11 ASN 11 343 343 ASN ASN A . n A 1 12 ALA 12 344 344 ALA ALA A . n A 1 13 THR 13 345 345 THR THR A . n A 1 14 ARG 14 346 346 ARG ARG A . n A 1 15 PHE 15 347 347 PHE PHE A . n A 1 16 ALA 16 348 348 ALA ALA A . n A 1 17 SER 17 349 349 SER SER A . n A 1 18 VAL 18 350 350 VAL VAL A . n A 1 19 TYR 19 351 351 TYR TYR A . n A 1 20 ALA 20 352 352 ALA ALA A . n A 1 21 TRP 21 353 353 TRP TRP A . n A 1 22 ASN 22 354 354 ASN ASN A . n A 1 23 ARG 23 355 355 ARG ARG A . n A 1 24 LYS 24 356 356 LYS LYS A . n A 1 25 ARG 25 357 357 ARG ARG A . n A 1 26 ILE 26 358 358 ILE ILE A . n A 1 27 SER 27 359 359 SER SER A . n A 1 28 ASN 28 360 360 ASN ASN A . n A 1 29 CYS 29 361 361 CYS CYS A . n A 1 30 VAL 30 362 362 VAL VAL A . n A 1 31 ALA 31 363 363 ALA ALA A . n A 1 32 ASP 32 364 364 ASP ASP A . n A 1 33 TYR 33 365 365 TYR TYR A . n A 1 34 SER 34 366 366 SER SER A . n A 1 35 VAL 35 367 367 VAL VAL A . n A 1 36 LEU 36 368 368 LEU LEU A . n A 1 37 TYR 37 369 369 TYR TYR A . n A 1 38 ASN 38 370 370 ASN ASN A . n A 1 39 SER 39 371 371 SER SER A . n A 1 40 ALA 40 372 372 ALA ALA A . n A 1 41 SER 41 373 373 SER SER A . n A 1 42 PHE 42 374 374 PHE PHE A . n A 1 43 SER 43 375 375 SER SER A . n A 1 44 THR 44 376 376 THR THR A . n A 1 45 PHE 45 377 377 PHE PHE A . n A 1 46 LYS 46 378 378 LYS LYS A . n A 1 47 CYS 47 379 379 CYS CYS A . n A 1 48 TYR 48 380 380 TYR TYR A . n A 1 49 GLY 49 381 381 GLY GLY A . n A 1 50 VAL 50 382 382 VAL VAL A . n A 1 51 SER 51 383 383 SER SER A . n A 1 52 PRO 52 384 384 PRO PRO A . n A 1 53 THR 53 385 385 THR THR A . n A 1 54 LYS 54 386 386 LYS LYS A . n A 1 55 LEU 55 387 387 LEU LEU A . n A 1 56 ASN 56 388 388 ASN ASN A . n A 1 57 ASP 57 389 389 ASP ASP A . n A 1 58 LEU 58 390 390 LEU LEU A . n A 1 59 CYS 59 391 391 CYS CYS A . n A 1 60 PHE 60 392 392 PHE PHE A . n A 1 61 THR 61 393 393 THR THR A . n A 1 62 ASN 62 394 394 ASN ASN A . n A 1 63 VAL 63 395 395 VAL VAL A . n A 1 64 TYR 64 396 396 TYR TYR A . n A 1 65 ALA 65 397 397 ALA ALA A . n A 1 66 ASP 66 398 398 ASP ASP A . n A 1 67 SER 67 399 399 SER SER A . n A 1 68 PHE 68 400 400 PHE PHE A . n A 1 69 VAL 69 401 401 VAL VAL A . n A 1 70 ILE 70 402 402 ILE ILE A . n A 1 71 ARG 71 403 403 ARG ARG A . n A 1 72 GLY 72 404 404 GLY GLY A . n A 1 73 ASP 73 405 405 ASP ASP A . n A 1 74 GLU 74 406 406 GLU GLU A . n A 1 75 VAL 75 407 407 VAL VAL A . n A 1 76 ARG 76 408 408 ARG ARG A . n A 1 77 GLN 77 409 409 GLN GLN A . n A 1 78 ILE 78 410 410 ILE ILE A . n A 1 79 ALA 79 411 411 ALA ALA A . n A 1 80 PRO 80 412 412 PRO PRO A . n A 1 81 GLY 81 413 413 GLY GLY A . n A 1 82 GLN 82 414 414 GLN GLN A . n A 1 83 THR 83 415 415 THR THR A . n A 1 84 GLY 84 416 416 GLY GLY A . n A 1 85 LYS 85 417 417 LYS LYS A . n A 1 86 ILE 86 418 418 ILE ILE A . n A 1 87 ALA 87 419 419 ALA ALA A . n A 1 88 ASP 88 420 420 ASP ASP A . n A 1 89 TYR 89 421 421 TYR TYR A . n A 1 90 ASN 90 422 422 ASN ASN A . n A 1 91 TYR 91 423 423 TYR TYR A . n A 1 92 LYS 92 424 424 LYS LYS A . n A 1 93 LEU 93 425 425 LEU LEU A . n A 1 94 PRO 94 426 426 PRO PRO A . n A 1 95 ASP 95 427 427 ASP ASP A . n A 1 96 ASP 96 428 428 ASP ASP A . n A 1 97 PHE 97 429 429 PHE PHE A . n A 1 98 THR 98 430 430 THR THR A . n A 1 99 GLY 99 431 431 GLY GLY A . n A 1 100 CYS 100 432 432 CYS CYS A . n A 1 101 VAL 101 433 433 VAL VAL A . n A 1 102 ILE 102 434 434 ILE ILE A . n A 1 103 ALA 103 435 435 ALA ALA A . n A 1 104 TRP 104 436 436 TRP TRP A . n A 1 105 ASN 105 437 437 ASN ASN A . n A 1 106 SER 106 438 438 SER SER A . n A 1 107 ASN 107 439 439 ASN ASN A . n A 1 108 ASN 108 440 440 ASN ASN A . n A 1 109 LEU 109 441 441 LEU LEU A . n A 1 110 ASP 110 442 442 ASP ASP A . n A 1 111 SER 111 443 443 SER SER A . n A 1 112 LYS 112 444 444 LYS LYS A . n A 1 113 VAL 113 445 445 VAL VAL A . n A 1 114 GLY 114 446 446 GLY GLY A . n A 1 115 GLY 115 447 447 GLY GLY A . n A 1 116 ASN 116 448 448 ASN ASN A . n A 1 117 TYR 117 449 449 TYR TYR A . n A 1 118 ASN 118 450 450 ASN ASN A . n A 1 119 TYR 119 451 451 TYR TYR A . n A 1 120 LEU 120 452 452 LEU LEU A . n A 1 121 TYR 121 453 453 TYR TYR A . n A 1 122 ARG 122 454 454 ARG ARG A . n A 1 123 LEU 123 455 455 LEU LEU A . n A 1 124 PHE 124 456 456 PHE PHE A . n A 1 125 ARG 125 457 457 ARG ARG A . n A 1 126 LYS 126 458 458 LYS LYS A . n A 1 127 SER 127 459 459 SER SER A . n A 1 128 ASN 128 460 460 ASN ASN A . n A 1 129 LEU 129 461 461 LEU LEU A . n A 1 130 LYS 130 462 462 LYS LYS A . n A 1 131 PRO 131 463 463 PRO PRO A . n A 1 132 PHE 132 464 464 PHE PHE A . n A 1 133 GLU 133 465 465 GLU GLU A . n A 1 134 ARG 134 466 466 ARG ARG A . n A 1 135 ASP 135 467 467 ASP ASP A . n A 1 136 ILE 136 468 468 ILE ILE A . n A 1 137 SER 137 469 469 SER SER A . n A 1 138 THR 138 470 470 THR THR A . n A 1 139 GLU 139 471 471 GLU GLU A . n A 1 140 ILE 140 472 472 ILE ILE A . n A 1 141 TYR 141 473 473 TYR TYR A . n A 1 142 GLN 142 474 474 GLN GLN A . n A 1 143 ALA 143 475 475 ALA ALA A . n A 1 144 GLY 144 476 476 GLY GLY A . n A 1 145 SER 145 477 477 SER SER A . n A 1 146 THR 146 478 478 THR THR A . n A 1 147 PRO 147 479 479 PRO PRO A . n A 1 148 CYS 148 480 480 CYS CYS A . n A 1 149 ASN 149 481 481 ASN ASN A . n A 1 150 GLY 150 482 482 GLY GLY A . n A 1 151 VAL 151 483 483 VAL VAL A . n A 1 152 GLU 152 484 484 GLU GLU A . n A 1 153 GLY 153 485 485 GLY GLY A . n A 1 154 PHE 154 486 486 PHE PHE A . n A 1 155 ASN 155 487 487 ASN ASN A . n A 1 156 CYS 156 488 488 CYS CYS A . n A 1 157 TYR 157 489 489 TYR TYR A . n A 1 158 PHE 158 490 490 PHE PHE A . n A 1 159 PRO 159 491 491 PRO PRO A . n A 1 160 LEU 160 492 492 LEU LEU A . n A 1 161 GLN 161 493 493 GLN GLN A . n A 1 162 SER 162 494 494 SER SER A . n A 1 163 TYR 163 495 495 TYR TYR A . n A 1 164 GLY 164 496 496 GLY GLY A . n A 1 165 PHE 165 497 497 PHE PHE A . n A 1 166 GLN 166 498 498 GLN GLN A . n A 1 167 PRO 167 499 499 PRO PRO A . n A 1 168 THR 168 500 500 THR THR A . n A 1 169 ASN 169 501 501 ASN ASN A . n A 1 170 GLY 170 502 502 GLY GLY A . n A 1 171 VAL 171 503 503 VAL VAL A . n A 1 172 GLY 172 504 504 GLY GLY A . n A 1 173 TYR 173 505 505 TYR TYR A . n A 1 174 GLN 174 506 506 GLN GLN A . n A 1 175 PRO 175 507 507 PRO PRO A . n A 1 176 TYR 176 508 508 TYR TYR A . n A 1 177 ARG 177 509 509 ARG ARG A . n A 1 178 VAL 178 510 510 VAL VAL A . n A 1 179 VAL 179 511 511 VAL VAL A . n A 1 180 VAL 180 512 512 VAL VAL A . n A 1 181 LEU 181 513 513 LEU LEU A . n A 1 182 SER 182 514 514 SER SER A . n A 1 183 PHE 183 515 515 PHE PHE A . n A 1 184 GLU 184 516 516 GLU GLU A . n A 1 185 LEU 185 517 517 LEU LEU A . n A 1 186 LEU 186 518 518 LEU LEU A . n A 1 187 HIS 187 519 519 HIS HIS A . n A 1 188 ALA 188 520 520 ALA ALA A . n A 1 189 PRO 189 521 521 PRO PRO A . n A 1 190 ALA 190 522 522 ALA ALA A . n A 1 191 THR 191 523 523 THR THR A . n A 1 192 VAL 192 524 524 VAL VAL A . n A 1 193 CYS 193 525 525 CYS CYS A . n A 1 194 GLY 194 526 526 GLY GLY A . n A 1 195 PRO 195 527 527 PRO PRO A . n B 2 1 GLN 1 1 1 GLN GLN H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 LYS 5 5 5 LYS LYS H . n B 2 6 GLN 6 6 6 GLN GLN H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 PRO 9 9 9 PRO PRO H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 ALA 13 13 13 ALA ALA H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 SER 15 15 15 SER SER H . n B 2 16 GLN 16 16 16 GLN GLN H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 SER 19 19 19 SER SER H . n B 2 20 ILE 20 20 20 ILE ILE H . n B 2 21 THR 21 21 21 THR THR H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 THR 23 23 23 THR THR H . n B 2 24 VAL 24 24 24 VAL VAL H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 SER 28 28 28 SER SER H . n B 2 29 LEU 29 29 29 LEU LEU H . n B 2 30 ILE 30 30 30 ILE ILE H . n B 2 31 ASN 31 31 31 ASN ASN H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 ALA 33 33 33 ALA ALA H . n B 2 34 ILE 34 34 34 ILE ILE H . n B 2 35 SER 35 35 35 SER SER H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 ARG 38 38 38 ARG ARG H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 PRO 40 40 40 PRO PRO H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLY 42 42 42 GLY GLY H . n B 2 43 LYS 43 43 43 LYS LYS H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 LEU 48 48 48 LEU LEU H . n B 2 49 GLY 49 49 49 GLY GLY H . n B 2 50 VAL 50 50 50 VAL VAL H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 TRP 52 52 52 TRP TRP H . n B 2 53 THR 53 53 53 THR THR H . n B 2 54 GLY 54 54 54 GLY GLY H . n B 2 55 GLY 55 55 55 GLY GLY H . n B 2 56 GLY 56 56 56 GLY GLY H . n B 2 57 THR 57 57 57 THR THR H . n B 2 58 ASN 58 58 58 ASN ASN H . n B 2 59 TYR 59 59 59 TYR TYR H . n B 2 60 ASN 60 60 60 ASN ASN H . n B 2 61 SER 61 61 61 SER SER H . n B 2 62 ALA 62 62 62 ALA ALA H . n B 2 63 LEU 63 63 63 LEU LEU H . n B 2 64 LYS 64 64 64 LYS LYS H . n B 2 65 SER 65 65 65 SER SER H . n B 2 66 ARG 66 66 66 ARG ARG H . n B 2 67 LEU 67 67 67 LEU LEU H . n B 2 68 SER 68 68 68 SER SER H . n B 2 69 ILE 69 69 69 ILE ILE H . n B 2 70 SER 70 70 70 SER SER H . n B 2 71 LYS 71 71 71 LYS LYS H . n B 2 72 ASP 72 72 72 ASP ASP H . n B 2 73 ASN 73 73 73 ASN ASN H . n B 2 74 SER 74 74 74 SER SER H . n B 2 75 LYS 75 75 75 LYS LYS H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 GLN 77 77 77 GLN GLN H . n B 2 78 VAL 78 78 78 VAL VAL H . n B 2 79 PHE 79 79 79 PHE PHE H . n B 2 80 LEU 80 80 80 LEU LEU H . n B 2 81 LYS 81 81 81 LYS LYS H . n B 2 82 MET 82 82 82 MET MET H . n B 2 83 ASN 83 83 83 ASN ASN H . n B 2 84 SER 84 84 84 SER SER H . n B 2 85 LEU 85 85 85 LEU LEU H . n B 2 86 GLN 86 86 86 GLN GLN H . n B 2 87 THR 87 87 87 THR THR H . n B 2 88 ASP 88 88 88 ASP ASP H . n B 2 89 ASP 89 89 89 ASP ASP H . n B 2 90 THR 90 90 90 THR THR H . n B 2 91 ALA 91 91 91 ALA ALA H . n B 2 92 ARG 92 92 92 ARG ARG H . n B 2 93 TYR 93 93 93 TYR TYR H . n B 2 94 TYR 94 94 94 TYR TYR H . n B 2 95 CYS 95 95 95 CYS CYS H . n B 2 96 ALA 96 96 96 ALA ALA H . n B 2 97 ARG 97 97 97 ARG ARG H . n B 2 98 LYS 98 98 98 LYS LYS H . n B 2 99 ASP 99 99 99 ASP ASP H . n B 2 100 TYR 100 100 100 TYR TYR H . n B 2 101 TYR 101 101 101 TYR TYR H . n B 2 102 GLY 102 102 102 GLY GLY H . n B 2 103 ARG 103 103 103 ARG ARG H . n B 2 104 TYR 104 104 104 TYR TYR H . n B 2 105 TYR 105 105 105 TYR TYR H . n B 2 106 GLY 106 106 106 GLY GLY H . n B 2 107 MET 107 107 107 MET MET H . n B 2 108 ASP 108 108 108 ASP ASP H . n B 2 109 TYR 109 109 109 TYR TYR H . n B 2 110 TRP 110 110 110 TRP TRP H . n B 2 111 GLY 111 111 111 GLY GLY H . n B 2 112 GLN 112 112 112 GLN GLN H . n B 2 113 GLY 113 113 113 GLY GLY H . n B 2 114 THR 114 114 114 THR THR H . n B 2 115 SER 115 115 115 SER SER H . n B 2 116 VAL 116 116 116 VAL VAL H . n B 2 117 THR 117 117 117 THR THR H . n B 2 118 VAL 118 118 118 VAL VAL H . n B 2 119 SER 119 119 119 SER SER H . n C 3 1 GLN 1 1 1 GLN GLN L . n C 3 2 ALA 2 2 2 ALA ALA L . n C 3 3 VAL 3 3 3 VAL VAL L . n C 3 4 VAL 4 4 4 VAL VAL L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 GLU 7 7 7 GLU GLU L . n C 3 8 SER 8 8 8 SER SER L . n C 3 9 ALA 9 9 9 ALA ALA L . n C 3 10 LEU 10 10 10 LEU LEU L . n C 3 11 THR 11 11 11 THR THR L . n C 3 12 THR 12 12 12 THR THR L . n C 3 13 SER 13 13 13 SER SER L . n C 3 14 PRO 14 14 14 PRO PRO L . n C 3 15 GLY 15 15 15 GLY GLY L . n C 3 16 GLU 16 16 16 GLU GLU L . n C 3 17 THR 17 17 17 THR THR L . n C 3 18 VAL 18 18 18 VAL VAL L . n C 3 19 THR 19 19 19 THR THR L . n C 3 20 LEU 20 20 20 LEU LEU L . n C 3 21 THR 21 21 21 THR THR L . n C 3 22 CYS 22 22 22 CYS CYS L . n C 3 23 ARG 23 23 23 ARG ARG L . n C 3 24 SER 24 24 24 SER SER L . n C 3 25 SER 25 25 25 SER SER L . n C 3 26 THR 26 26 26 THR THR L . n C 3 27 GLY 27 27 27 GLY GLY L . n C 3 28 ALA 28 28 28 ALA ALA L . n C 3 29 VAL 29 29 29 VAL VAL L . n C 3 30 THR 30 30 30 THR THR L . n C 3 31 THR 31 31 31 THR THR L . n C 3 32 SER 32 32 32 SER SER L . n C 3 33 ASN 33 33 33 ASN ASN L . n C 3 34 TYR 34 34 34 TYR TYR L . n C 3 35 ALA 35 35 35 ALA ALA L . n C 3 36 ASN 36 36 36 ASN ASN L . n C 3 37 TRP 37 37 37 TRP TRP L . n C 3 38 VAL 38 38 38 VAL VAL L . n C 3 39 GLN 39 39 39 GLN GLN L . n C 3 40 GLU 40 40 40 GLU GLU L . n C 3 41 LYS 41 41 41 LYS LYS L . n C 3 42 PRO 42 42 42 PRO PRO L . n C 3 43 ASP 43 43 43 ASP ASP L . n C 3 44 HIS 44 44 44 HIS HIS L . n C 3 45 LEU 45 45 45 LEU LEU L . n C 3 46 PHE 46 46 46 PHE PHE L . n C 3 47 THR 47 47 47 THR THR L . n C 3 48 GLY 48 48 48 GLY GLY L . n C 3 49 LEU 49 49 49 LEU LEU L . n C 3 50 ILE 50 50 50 ILE ILE L . n C 3 51 GLY 51 51 51 GLY GLY L . n C 3 52 GLY 52 52 52 GLY GLY L . n C 3 53 THR 53 53 53 THR THR L . n C 3 54 ASN 54 54 54 ASN ASN L . n C 3 55 ASN 55 55 55 ASN ASN L . n C 3 56 ARG 56 56 56 ARG ARG L . n C 3 57 ALA 57 57 57 ALA ALA L . n C 3 58 PRO 58 58 58 PRO PRO L . n C 3 59 GLY 59 59 59 GLY GLY L . n C 3 60 VAL 60 60 60 VAL VAL L . n C 3 61 PRO 61 61 61 PRO PRO L . n C 3 62 ALA 62 62 62 ALA ALA L . n C 3 63 ARG 63 63 63 ARG ARG L . n C 3 64 PHE 64 64 64 PHE PHE L . n C 3 65 SER 65 65 65 SER SER L . n C 3 66 GLY 66 66 66 GLY GLY L . n C 3 67 SER 67 67 67 SER SER L . n C 3 68 LEU 68 68 68 LEU LEU L . n C 3 69 ILE 69 69 69 ILE ILE L . n C 3 70 GLY 70 70 70 GLY GLY L . n C 3 71 ASP 71 71 71 ASP ASP L . n C 3 72 LYS 72 72 72 LYS LYS L . n C 3 73 ALA 73 73 73 ALA ALA L . n C 3 74 ALA 74 74 74 ALA ALA L . n C 3 75 LEU 75 75 75 LEU LEU L . n C 3 76 THR 76 76 76 THR THR L . n C 3 77 ILE 77 77 77 ILE ILE L . n C 3 78 THR 78 78 78 THR THR L . n C 3 79 GLY 79 79 79 GLY GLY L . n C 3 80 ALA 80 80 80 ALA ALA L . n C 3 81 GLN 81 81 81 GLN GLN L . n C 3 82 THR 82 82 82 THR THR L . n C 3 83 GLU 83 83 83 GLU GLU L . n C 3 84 ASP 84 84 84 ASP ASP L . n C 3 85 GLU 85 85 85 GLU GLU L . n C 3 86 ALA 86 86 86 ALA ALA L . n C 3 87 ILE 87 87 87 ILE ILE L . n C 3 88 TYR 88 88 88 TYR TYR L . n C 3 89 PHE 89 89 89 PHE PHE L . n C 3 90 CYS 90 90 90 CYS CYS L . n C 3 91 ALA 91 91 91 ALA ALA L . n C 3 92 LEU 92 92 92 LEU LEU L . n C 3 93 TRP 93 93 93 TRP TRP L . n C 3 94 TYR 94 94 94 TYR TYR L . n C 3 95 ASN 95 95 95 ASN ASN L . n C 3 96 ASN 96 96 96 ASN ASN L . n C 3 97 HIS 97 97 97 HIS HIS L . n C 3 98 TRP 98 98 98 TRP TRP L . n C 3 99 VAL 99 99 99 VAL VAL L . n C 3 100 PHE 100 100 100 PHE PHE L . n C 3 101 GLY 101 101 101 GLY GLY L . n C 3 102 GLY 102 102 102 GLY GLY L . n C 3 103 GLY 103 103 103 GLY GLY L . n C 3 104 THR 104 104 104 THR THR L . n C 3 105 LYS 105 105 105 LYS LYS L . n C 3 106 LEU 106 106 106 LEU LEU L . n C 3 107 THR 107 107 107 THR THR L . n C 3 108 VAL 108 108 108 VAL VAL L . n C 3 109 LEU 109 109 109 LEU LEU L . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 528 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-29 2 'Structure model' 1 1 2021-11-03 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 3 'Structure model' '_citation.journal_volume' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18.2_3874: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7K9I _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _em_3d_fitting.entry_id 7K9I _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7K9I _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details 'C3 expanded particles' _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 262342 _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # loop_ _em_buffer.id _em_buffer.details _em_buffer.pH _em_buffer.specimen_id _em_buffer.name 1 ? 7.5 1 ? 2 ? 7.5 2 ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 'Fab fragments generated by proteolytic cleavage of IgG antibody' 'Complex of SARS-CoV-2 Spike with Fab fragment of monoclonal antibody 2B04' 'MULTIPLE SOURCES' COMPLEX '1, 2, 3' ? ? 2 1 ? 'SARS-CoV-2 Spike' RECOMBINANT COMPLEX 1 ? ? 3 1 ? 'Fab fragment of monoclonal antibody 2B04' RECOMBINANT COMPLEX '2, 3' ? ? # _em_image_scans.entry_id 7K9I _em_image_scans.id 1 _em_image_scans.dimension_height 3710 _em_image_scans.dimension_width 3838 _em_image_scans.frames_per_image 45 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 1-45 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7K9I _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 0.01 _em_imaging.nominal_defocus_max 2500 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_magnification 105000 _em_imaging.recording_temperature_maximum 80 _em_imaging.recording_temperature_minimum 80 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped YES _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # loop_ _em_vitrification.id _em_vitrification.specimen_id _em_vitrification.chamber_temperature _em_vitrification.cryogen_name _em_vitrification.details _em_vitrification.humidity _em_vitrification.instrument _em_vitrification.entry_id _em_vitrification.citation_id _em_vitrification.method _em_vitrification.temp _em_vitrification.time_resolved_state 1 1 ? ETHANE ? ? 'FEI VITROBOT MARK IV' 7K9I ? ? ? ? 2 2 ? ETHANE ? ? 'FEI VITROBOT MARK IV' 7K9I ? ? ? ? # _em_experiment.entry_id 7K9I _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7K9I _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A THR 393 ? ? OG1 A THR 523 ? ? 2.12 2 1 O H ILE 30 ? ? OG1 H THR 53 ? ? 2.14 3 1 NH1 A ARG 457 ? ? OD2 A ASP 467 ? ? 2.17 4 1 OG1 L THR 12 ? ? O L GLU 16 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR H 105 ? ? -66.81 5.70 2 1 THR L 53 ? ? 72.99 -11.01 3 1 ASN L 54 ? ? -140.57 -13.73 4 1 SER L 67 ? ? -172.67 -173.21 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 1 2 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? 2 3 ? ? 10090 ? ? 'Mus musculus' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 1 2 HEK293 9606 'Homo sapiens' ? ? 2 3 HEK293 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 67 _em_image_recording.average_exposure_time 9.0 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector 'Microscope was modified with a Cs corrector.' # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1842978 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? EPU 1.11.1.50rel ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? Gctf 1.06 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? RELION 3.1 1 ? ? 12 RECONSTRUCTION ? cryoSPARC 2.15 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # loop_ _em_specimen.id _em_specimen.experiment_id _em_specimen.concentration _em_specimen.details _em_specimen.embedding_applied _em_specimen.shadowing_applied _em_specimen.staining_applied _em_specimen.vitrification_applied 1 1 1.0 ? NO NO NO YES 2 1 0.2 ? NO NO NO YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' HHSN272201700060C 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 75N93019C00062 2 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 #