HEADER TRANSFERASE/TRANSFERASE INHIBITOR 30-SEP-20 7KAC TITLE CRYSTAL STRUCTURE OF HPK1 (MAP4K1) KINASE IN COMPLEX WITH 5-{[4- TITLE 2 {[(1S)-2-HYDROXY-1-PHENYLETHYL]AMINO}-5-(1,3,4-OXADIAZOL-2-YL) TITLE 3 PYRIMIDIN-2-YL]AMINO}-3,3-DIMETHYL-2-BENZOFURAN-1(3H)-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE COMPND 3 KINASE 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: PROTEIN KINASE DOMAIN: RESIDUES 1-319; COMPND 6 SYNONYM: HEMATOPOIETIC PROGENITOR KINASE,MAPK/ERK KINASE KINASE COMPND 7 KINASE 1,MEKKK 1; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP4K1, HPK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS KINASE, MAP4K1, HPK1, SERINE/THREONINE-PROTEIN KINASE, HEMATOPOIETIC KEYWDS 2 PROGENITOR KINASE, MAPK/ERK KINASE KINASE KINASE 1, MEK KINASE KEYWDS 3 KINASE 1, MEKKK1, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, TRANSFERASE- KEYWDS 4 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SHERIFF REVDAT 3 18-OCT-23 7KAC 1 REMARK REVDAT 2 27-JAN-21 7KAC 1 JRNL REVDAT 1 13-JAN-21 7KAC 0 JRNL AUTH W.L.LAU,B.PEARCE,H.MALAKIAN,I.RODRIGO,D.XIE,M.GAO, JRNL AUTH 2 F.MARSILIO,C.CHANG,M.RUZANOV,J.K.MUCKELBAUER,J.A.NEWITT, JRNL AUTH 3 D.LIPOVSEK,S.SHERIFF JRNL TITL USING YEAST SURFACE DISPLAY TO ENGINEER A SOLUBLE AND JRNL TITL 2 CRYSTALLIZABLE CONSTRUCT OF HEMATOPOIETIC PROGENITOR KINASE JRNL TITL 3 1 (HPK1). JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 77 22 2021 JRNL REFN ESSN 2053-230X JRNL PMID 33439152 JRNL DOI 10.1107/S2053230X20016015 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 46.1 REMARK 3 NUMBER OF REFLECTIONS : 27265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 546 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2051 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 509 REMARK 3 BIN R VALUE (WORKING SET) : 0.2026 REMARK 3 BIN FREE R VALUE : 0.2371 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.78 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 37 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52030 REMARK 3 B22 (A**2) : -0.11120 REMARK 3 B33 (A**2) : 0.63150 REMARK 3 B12 (A**2) : -0.00960 REMARK 3 B13 (A**2) : -0.68300 REMARK 3 B23 (A**2) : 0.49040 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.350 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.300 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.207 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8228 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 14850 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2390 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1452 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4309 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 577 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5703 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.81 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.48 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27265 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 58.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 46.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 5.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.05300 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3COM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 THR A -6 REMARK 465 VAL A -5 REMARK 465 ARG A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 157 REMARK 465 ILE A 158 REMARK 465 SER A 159 REMARK 465 ALA A 160 REMARK 465 GLN A 161 REMARK 465 ILE A 162 REMARK 465 GLY A 163 REMARK 465 ALA A 164 REMARK 465 THR A 165 REMARK 465 LEU A 166 REMARK 465 ALA A 167 REMARK 465 ARG A 168 REMARK 465 ARG A 169 REMARK 465 LEU A 170 REMARK 465 SER A 171 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 GLU A 307 REMARK 465 PRO A 308 REMARK 465 GLU A 309 REMARK 465 LEU A 310 REMARK 465 PRO A 311 REMARK 465 PRO A 312 REMARK 465 ALA A 313 REMARK 465 ILE A 314 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 ARG A 317 REMARK 465 ILE A 318 REMARK 465 ARG A 319 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 GLU B -7 REMARK 465 THR B -6 REMARK 465 VAL B -5 REMARK 465 ARG B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 VAL B 4 REMARK 465 ASP B 5 REMARK 465 PRO B 6 REMARK 465 GLY B 295 REMARK 465 LYS B 296 REMARK 465 GLY B 297 REMARK 465 PRO B 298 REMARK 465 SER B 299 REMARK 465 ILE B 300 REMARK 465 GLY B 301 REMARK 465 ASP B 302 REMARK 465 ILE B 303 REMARK 465 GLU B 304 REMARK 465 ASP B 305 REMARK 465 GLU B 306 REMARK 465 GLU B 307 REMARK 465 PRO B 308 REMARK 465 GLU B 309 REMARK 465 LEU B 310 REMARK 465 PRO B 311 REMARK 465 PRO B 312 REMARK 465 ALA B 313 REMARK 465 ILE B 314 REMARK 465 PRO B 315 REMARK 465 ARG B 316 REMARK 465 ARG B 317 REMARK 465 ILE B 318 REMARK 465 ARG B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 ILE A 8 CG1 CG2 CD1 REMARK 470 ASN A 10 CG OD1 ND2 REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 12 CG OD1 OD2 REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 15 CG OD1 OD2 REMARK 470 ASP A 18 CG OD1 OD2 REMARK 470 LEU A 20 CG CD1 CD2 REMARK 470 THR A 27 OG1 CG2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 VAL A 38 CG1 CG2 REMARK 470 SER A 39 OG REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 MET A 50 CG SD CE REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 VAL A 56 CG1 CG2 REMARK 470 THR A 58 OG1 CG2 REMARK 470 LEU A 59 CG CD1 CD2 REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ILE A 63 CG1 CG2 CD1 REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 ILE A 65 CG1 CG2 CD1 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 83 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 83 CZ3 CH2 REMARK 470 LEU A 84 CG CD1 CD2 REMARK 470 LYS A 86 CE NZ REMARK 470 TRP A 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 88 CZ3 CH2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 PHE A 172 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 173 CG1 CG2 CD1 REMARK 470 LYS A 189 CD CE NZ REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 SER A 230 OG REMARK 470 GLN A 233 CG CD OE1 NE2 REMARK 470 ARG A 236 NE CZ NH1 NH2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 SER A 275 OG REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 SER A 299 OG REMARK 470 ILE A 300 CG1 CG2 CD1 REMARK 470 ASP A 302 CG OD1 OD2 REMARK 470 ILE A 303 CG1 CG2 CD1 REMARK 470 GLU A 304 CD OE1 OE2 REMARK 470 ASP B 7 CG OD1 OD2 REMARK 470 PHE B 9 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 11 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 14 CD NE CZ NH1 NH2 REMARK 470 THR B 27 OG1 CG2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 VAL B 38 CG1 CG2 REMARK 470 SER B 39 OG REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 MET B 50 CG SD CE REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 ASP B 54 CG OD1 OD2 REMARK 470 ASP B 55 CG OD1 OD2 REMARK 470 SER B 57 OG REMARK 470 THR B 58 OG1 CG2 REMARK 470 LEU B 59 CG CD1 CD2 REMARK 470 GLN B 60 CG CD OE1 NE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 82 CG CD1 CD2 REMARK 470 TRP B 83 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 83 CZ3 CH2 REMARK 470 LEU B 84 CG CD1 CD2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 LEU B 166 CG CD1 CD2 REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 169 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 170 CG CD1 CD2 REMARK 470 PHE B 172 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 SER B 230 OG REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 LYS B 260 CE NZ REMARK 470 LYS B 267 CD CE NZ REMARK 470 SER B 270 OG REMARK 470 GLN B 272 CG CD OE1 NE2 REMARK 470 SER B 275 OG REMARK 470 LYS B 290 CG CD CE NZ REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 ASN B 293 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 146 OE1 GLU A 150 1.56 REMARK 500 O GLU A 111 HG SER A 115 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 34.58 -97.34 REMARK 500 TYR A 28 26.84 -72.05 REMARK 500 GLU A 51 102.78 68.87 REMARK 500 ASP A 53 -57.58 -155.91 REMARK 500 ASP A 55 30.18 -147.40 REMARK 500 ASP A 137 45.64 -149.84 REMARK 500 ASP A 155 78.40 66.93 REMARK 500 LEU A 255 41.92 -91.75 REMARK 500 ILE A 303 -135.77 49.52 REMARK 500 ASN B 10 34.50 -96.85 REMARK 500 GLU B 51 -66.96 -154.66 REMARK 500 ASP B 137 44.60 -146.95 REMARK 500 ASP B 155 78.09 65.61 REMARK 500 ALA B 167 -48.73 -167.71 REMARK 500 ARG B 168 -50.67 -132.33 REMARK 500 LEU B 170 37.36 -145.36 REMARK 500 SER B 171 51.13 -154.16 REMARK 500 LEU B 211 -0.32 69.70 REMARK 500 LEU B 255 41.90 -93.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue W9D A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue W9D B 401 DBREF 7KAC A 1 319 UNP Q92918 M4K1_HUMAN 1 319 DBREF 7KAC B 1 319 UNP Q92918 M4K1_HUMAN 1 319 SEQADV 7KAC MET A -20 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLY A -19 UNP Q92918 EXPRESSION TAG SEQADV 7KAC SER A -18 UNP Q92918 EXPRESSION TAG SEQADV 7KAC SER A -17 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS A -16 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS A -15 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS A -14 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS A -13 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS A -12 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS A -11 UNP Q92918 EXPRESSION TAG SEQADV 7KAC SER A -10 UNP Q92918 EXPRESSION TAG SEQADV 7KAC SER A -9 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLY A -8 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLU A -7 UNP Q92918 EXPRESSION TAG SEQADV 7KAC THR A -6 UNP Q92918 EXPRESSION TAG SEQADV 7KAC VAL A -5 UNP Q92918 EXPRESSION TAG SEQADV 7KAC ARG A -4 UNP Q92918 EXPRESSION TAG SEQADV 7KAC PHE A -3 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLN A -2 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLY A -1 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS A 0 UNP Q92918 EXPRESSION TAG SEQADV 7KAC ASP A 221 UNP Q92918 LEU 221 ENGINEERED MUTATION SEQADV 7KAC GLU A 225 UNP Q92918 PHE 225 ENGINEERED MUTATION SEQADV 7KAC MET B -20 UNP Q92918 INITIATING METHIONINE SEQADV 7KAC GLY B -19 UNP Q92918 EXPRESSION TAG SEQADV 7KAC SER B -18 UNP Q92918 EXPRESSION TAG SEQADV 7KAC SER B -17 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS B -16 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS B -15 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS B -14 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS B -13 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS B -12 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS B -11 UNP Q92918 EXPRESSION TAG SEQADV 7KAC SER B -10 UNP Q92918 EXPRESSION TAG SEQADV 7KAC SER B -9 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLY B -8 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLU B -7 UNP Q92918 EXPRESSION TAG SEQADV 7KAC THR B -6 UNP Q92918 EXPRESSION TAG SEQADV 7KAC VAL B -5 UNP Q92918 EXPRESSION TAG SEQADV 7KAC ARG B -4 UNP Q92918 EXPRESSION TAG SEQADV 7KAC PHE B -3 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLN B -2 UNP Q92918 EXPRESSION TAG SEQADV 7KAC GLY B -1 UNP Q92918 EXPRESSION TAG SEQADV 7KAC HIS B 0 UNP Q92918 EXPRESSION TAG SEQADV 7KAC ASP B 221 UNP Q92918 LEU 221 ENGINEERED MUTATION SEQADV 7KAC GLU B 225 UNP Q92918 PHE 225 ENGINEERED MUTATION SEQRES 1 A 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 340 GLU THR VAL ARG PHE GLN GLY HIS MET ASP VAL VAL ASP SEQRES 3 A 340 PRO ASP ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP SEQRES 4 A 340 LEU LEU GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL SEQRES 5 A 340 PHE LYS ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA SEQRES 6 A 340 LEU LYS MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER SEQRES 7 A 340 THR LEU GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG SEQRES 8 A 340 HIS ALA ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP SEQRES 9 A 340 LEU GLN LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA SEQRES 10 A 340 GLY SER LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SEQRES 11 A 340 SER GLU LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU SEQRES 12 A 340 GLN GLY LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS SEQRES 13 A 340 ARG ASP ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA SEQRES 14 A 340 GLY GLU VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN SEQRES 15 A 340 ILE GLY ALA THR LEU ALA ARG ARG LEU SER PHE ILE GLY SEQRES 16 A 340 THR PRO TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA SEQRES 17 A 340 LEU LYS GLY GLY TYR ASN GLU LEU CYS ASP ILE TRP SER SEQRES 18 A 340 LEU GLY ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO SEQRES 19 A 340 PRO LEU PHE ASP VAL HIS PRO ASP ARG VAL LEU GLU LEU SEQRES 20 A 340 MET THR LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU SEQRES 21 A 340 LYS GLY LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS SEQRES 22 A 340 VAL THR LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA SEQRES 23 A 340 THR LYS MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY SEQRES 24 A 340 LEU ASN ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU SEQRES 25 A 340 LYS ASN PRO GLY LYS GLY PRO SER ILE GLY ASP ILE GLU SEQRES 26 A 340 ASP GLU GLU PRO GLU LEU PRO PRO ALA ILE PRO ARG ARG SEQRES 27 A 340 ILE ARG SEQRES 1 B 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 340 GLU THR VAL ARG PHE GLN GLY HIS MET ASP VAL VAL ASP SEQRES 3 B 340 PRO ASP ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP SEQRES 4 B 340 LEU LEU GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL SEQRES 5 B 340 PHE LYS ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA SEQRES 6 B 340 LEU LYS MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER SEQRES 7 B 340 THR LEU GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG SEQRES 8 B 340 HIS ALA ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP SEQRES 9 B 340 LEU GLN LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA SEQRES 10 B 340 GLY SER LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SEQRES 11 B 340 SER GLU LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU SEQRES 12 B 340 GLN GLY LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS SEQRES 13 B 340 ARG ASP ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA SEQRES 14 B 340 GLY GLU VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN SEQRES 15 B 340 ILE GLY ALA THR LEU ALA ARG ARG LEU SER PHE ILE GLY SEQRES 16 B 340 THR PRO TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA SEQRES 17 B 340 LEU LYS GLY GLY TYR ASN GLU LEU CYS ASP ILE TRP SER SEQRES 18 B 340 LEU GLY ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO SEQRES 19 B 340 PRO LEU PHE ASP VAL HIS PRO ASP ARG VAL LEU GLU LEU SEQRES 20 B 340 MET THR LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU SEQRES 21 B 340 LYS GLY LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS SEQRES 22 B 340 VAL THR LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA SEQRES 23 B 340 THR LYS MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY SEQRES 24 B 340 LEU ASN ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU SEQRES 25 B 340 LYS ASN PRO GLY LYS GLY PRO SER ILE GLY ASP ILE GLU SEQRES 26 B 340 ASP GLU GLU PRO GLU LEU PRO PRO ALA ILE PRO ARG ARG SEQRES 27 B 340 ILE ARG HET W9D A 401 56 HET W9D B 401 56 HETNAM W9D 5-{[4-{[(1S)-2-HYDROXY-1-PHENYLETHYL]AMINO}-5-(1,3,4- HETNAM 2 W9D OXADIAZOL-2-YL)PYRIMIDIN-2-YL]AMINO}-3,3-DIMETHYL-2- HETNAM 3 W9D BENZOFURAN-1(3H)-ONE FORMUL 3 W9D 2(C24 H22 N6 O4) FORMUL 5 HOH *33(H2 O) HELIX 1 AA1 ASP A 12 ASP A 15 5 4 HELIX 2 AA2 LEU A 59 THR A 68 1 10 HELIX 3 AA3 SER A 98 GLY A 107 1 10 HELIX 4 AA4 SER A 110 GLN A 131 1 22 HELIX 5 AA5 LYS A 139 ALA A 141 5 3 HELIX 6 AA6 ALA A 180 GLY A 190 1 11 HELIX 7 AA7 LEU A 195 LEU A 211 1 17 HELIX 8 AA8 HIS A 219 LYS A 229 1 11 HELIX 9 AA9 SER A 244 LEU A 255 1 12 HELIX 10 AB1 SER A 264 LEU A 269 1 6 HELIX 11 AB2 HIS A 271 GLN A 276 1 6 HELIX 12 AB3 ARG A 281 ASN A 293 1 13 HELIX 13 AB4 ASP B 12 ASP B 15 5 4 HELIX 14 AB5 VAL B 56 CYS B 69 1 14 HELIX 15 AB6 LEU B 99 GLY B 107 1 9 HELIX 16 AB7 SER B 110 GLN B 131 1 22 HELIX 17 AB8 LYS B 139 ALA B 141 5 3 HELIX 18 AB9 PHE B 156 LEU B 166 1 11 HELIX 19 AC1 ALA B 180 LYS B 189 1 10 HELIX 20 AC2 LEU B 195 LEU B 211 1 17 HELIX 21 AC3 HIS B 219 LYS B 229 1 11 HELIX 22 AC4 SER B 244 LEU B 255 1 12 HELIX 23 AC5 SER B 264 LEU B 269 1 6 HELIX 24 AC6 HIS B 271 GLN B 276 1 6 HELIX 25 AC7 ARG B 281 ASN B 293 1 13 SHEET 1 AA1 5 TYR A 17 GLY A 26 0 SHEET 2 AA1 5 GLY A 29 ASP A 36 -1 O LYS A 33 N GLN A 21 SHEET 3 AA1 5 LEU A 42 LYS A 49 -1 O MET A 47 N GLU A 30 SHEET 4 AA1 5 LYS A 86 GLU A 92 -1 O LEU A 87 N VAL A 48 SHEET 5 AA1 5 TYR A 77 LEU A 82 -1 N GLY A 79 O CYS A 90 SHEET 1 AA2 2 ILE A 143 ILE A 145 0 SHEET 2 AA2 2 VAL A 151 LEU A 153 -1 O ARG A 152 N LEU A 144 SHEET 1 AA3 5 TYR B 17 GLY B 24 0 SHEET 2 AA3 5 GLY B 29 ASP B 36 -1 O LYS B 33 N GLN B 21 SHEET 3 AA3 5 LEU B 42 LYS B 49 -1 O MET B 47 N GLU B 30 SHEET 4 AA3 5 LYS B 86 GLU B 92 -1 O MET B 91 N ALA B 44 SHEET 5 AA3 5 TYR B 77 LEU B 82 -1 N GLY B 79 O CYS B 90 SHEET 1 AA4 3 GLY B 97 SER B 98 0 SHEET 2 AA4 3 ILE B 143 ILE B 145 -1 O ILE B 145 N GLY B 97 SHEET 3 AA4 3 VAL B 151 LEU B 153 -1 O ARG B 152 N LEU B 144 SITE 1 AC1 14 LEU A 23 GLY A 24 TYR A 28 VAL A 31 SITE 2 AC1 14 ALA A 44 VAL A 75 MET A 91 GLU A 92 SITE 3 AC1 14 PHE A 93 CYS A 94 GLY A 95 ASP A 101 SITE 4 AC1 14 LEU A 144 ASP A 155 SITE 1 AC2 12 GLY B 24 VAL B 31 ALA B 44 MET B 91 SITE 2 AC2 12 GLU B 92 PHE B 93 CYS B 94 GLY B 95 SITE 3 AC2 12 GLY B 97 ASP B 101 LEU B 144 ASP B 155 CRYST1 55.830 58.470 60.480 78.81 79.82 66.08 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017912 -0.007945 -0.002156 0.00000 SCALE2 0.000000 0.018710 -0.002569 0.00000 SCALE3 0.000000 0.000000 0.016956 0.00000