HEADER CELL ADHESION 03-OCT-20 7KBU TITLE STRUCTURE OF HEVIN FS-EC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATION-INDUCING PROTEIN 33; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SPARC-LIKE 1 (HEVIN); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPARCL1, PIG33; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS HEVIN, SPARC, NEUREXINS, NEUROLIGINS, MDGAS, SYNAPTIC ORGANIZER, KEYWDS 2 ADHESION MOLECULE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.MACHIUS,S.FAN,G.RUDENKO REVDAT 3 14-JUL-21 7KBU 1 JRNL REVDAT 2 17-FEB-21 7KBU 1 JRNL REVDAT 1 10-FEB-21 7KBU 0 JRNL AUTH S.FAN,S.P.GANGWAR,M.MACHIUS,G.RUDENKO JRNL TITL INTERPLAY BETWEEN HEVIN, SPARC, AND MDGAS: MODULATORS OF JRNL TITL 2 NEUREXIN-NEUROLIGIN TRANSSYNAPTIC BRIDGES. JRNL REF STRUCTURE V. 29 664 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33535026 JRNL DOI 10.1016/J.STR.2021.01.003 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19RC7_4070: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 25958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0000 - 4.7200 1.00 2956 156 0.2099 0.2429 REMARK 3 2 4.7200 - 3.7500 1.00 2873 151 0.1578 0.1876 REMARK 3 3 3.7500 - 3.2800 1.00 2834 149 0.1695 0.2323 REMARK 3 4 3.2800 - 2.9800 1.00 2797 148 0.1956 0.2500 REMARK 3 5 2.9800 - 2.7600 1.00 2804 147 0.1951 0.2842 REMARK 3 6 2.7600 - 2.6000 1.00 2796 147 0.1849 0.2582 REMARK 3 7 2.6000 - 2.4700 1.00 2775 146 0.1901 0.2394 REMARK 3 8 2.4700 - 2.3600 0.98 2727 144 0.1944 0.2589 REMARK 3 9 2.3600 - 2.2700 0.76 2098 110 0.2245 0.2972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3547 REMARK 3 ANGLE : 0.902 4794 REMARK 3 CHIRALITY : 0.046 517 REMARK 3 PLANARITY : 0.007 617 REMARK 3 DIHEDRAL : 5.102 471 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7312 86.7734 47.7381 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.2495 REMARK 3 T33: 0.1807 T12: -0.0175 REMARK 3 T13: 0.0291 T23: -0.0691 REMARK 3 L TENSOR REMARK 3 L11: 0.7390 L22: 3.3376 REMARK 3 L33: 1.6400 L12: 0.0332 REMARK 3 L13: 0.0085 L23: -1.0768 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0718 S13: 0.2031 REMARK 3 S21: -0.4651 S22: 0.0414 S23: -0.0185 REMARK 3 S31: 0.0858 S32: 0.0888 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 543 THROUGH 663 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4243 75.5214 59.4143 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.2434 REMARK 3 T33: 0.3143 T12: -0.0198 REMARK 3 T13: -0.0247 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 2.0962 L22: 1.1056 REMARK 3 L33: 3.0099 L12: -0.9592 REMARK 3 L13: -0.0618 L23: 0.0375 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: -0.3021 S13: -0.1059 REMARK 3 S21: -0.0817 S22: 0.1627 S23: 0.3733 REMARK 3 S31: -0.0350 S32: -0.3789 S33: 0.0861 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 438 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9218 42.6993 51.4748 REMARK 3 T TENSOR REMARK 3 T11: 0.7334 T22: 0.1815 REMARK 3 T33: 0.3802 T12: 0.0660 REMARK 3 T13: 0.0386 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.0022 L22: 2.1207 REMARK 3 L33: 1.5819 L12: -0.1505 REMARK 3 L13: 1.0363 L23: -0.3911 REMARK 3 S TENSOR REMARK 3 S11: 0.2139 S12: 0.0277 S13: -0.5936 REMARK 3 S21: 0.0065 S22: -0.2119 S23: 0.5884 REMARK 3 S31: 0.9978 S32: 0.3516 S33: -0.0092 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 507 THROUGH 666 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0696 69.3417 61.0882 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.3382 REMARK 3 T33: 0.1609 T12: 0.0512 REMARK 3 T13: 0.0261 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.2836 L22: 2.5846 REMARK 3 L33: 3.0664 L12: 0.1661 REMARK 3 L13: 0.8699 L23: 0.1940 REMARK 3 S TENSOR REMARK 3 S11: 0.1028 S12: -0.0298 S13: -0.0554 REMARK 3 S21: 0.0057 S22: 0.0071 S23: -0.4340 REMARK 3 S31: 0.2885 S32: 0.7105 S33: 0.0477 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 1.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CRYSTALS WERE DIAMOND-SHAPED WITH CLEAN EDGES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 MICROLITERS OF PROTEIN SOLUTION (12 REMARK 280 MG/ML IN 10 MM TRIS, PH 7.5, 2 MM CACL2) WERE MIXED WITH 3 REMARK 280 MICROLITERS OF CRYSTALLIZATION SOLUTION (14% (W/V) PEG 4000, REMARK 280 0.15 M SODIUM ACETATE, 0.1 M HEPES, PH 7.5) AND EQUILIBRATED REMARK 280 AGAINST CRYSTALLIZATION SOLUTION. DIAMOND-SHAPED CRYSTALS GREW REMARK 280 WITHIN ~10 DAYS AND WERE UP TO 200 MICROMETERS IN LENGTH., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.82850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.61250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.14450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.61250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.82850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.14450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.82850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.14450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.61250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.14450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.82850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.61250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 545 REMARK 465 ALA A 546 REMARK 465 GLY A 547 REMARK 465 TYR A 548 REMARK 465 LEU A 549 REMARK 465 ASN A 550 REMARK 465 GLU A 551 REMARK 465 LYS A 552 REMARK 465 GLN A 553 REMARK 465 ARG A 554 REMARK 465 ASN A 555 REMARK 465 LYS A 556 REMARK 465 PHE A 664 REMARK 465 ALA A 665 REMARK 465 SER A 666 REMARK 465 THR A 667 REMARK 465 SER A 668 REMARK 465 HIS A 669 REMARK 465 HIS A 670 REMARK 465 HIS A 671 REMARK 465 HIS A 672 REMARK 465 HIS A 673 REMARK 465 HIS A 674 REMARK 465 ASP B 431 REMARK 465 SER B 432 REMARK 465 CYS B 433 REMARK 465 MET B 434 REMARK 465 SER B 435 REMARK 465 PHE B 436 REMARK 465 GLN B 437 REMARK 465 CYS B 444 REMARK 465 LYS B 445 REMARK 465 ALA B 446 REMARK 465 ASP B 447 REMARK 465 GLN B 448 REMARK 465 GLN B 449 REMARK 465 GLY B 450 REMARK 465 LYS B 451 REMARK 465 PRO B 452 REMARK 465 HIS B 453 REMARK 465 SER B 543 REMARK 465 GLU B 544 REMARK 465 HIS B 545 REMARK 465 ALA B 546 REMARK 465 GLY B 547 REMARK 465 TYR B 548 REMARK 465 LEU B 549 REMARK 465 ASN B 550 REMARK 465 GLU B 551 REMARK 465 LYS B 552 REMARK 465 GLN B 553 REMARK 465 ARG B 554 REMARK 465 ASN B 555 REMARK 465 LYS B 556 REMARK 465 VAL B 557 REMARK 465 LYS B 558 REMARK 465 LYS B 559 REMARK 465 ILE B 560 REMARK 465 TYR B 561 REMARK 465 LEU B 562 REMARK 465 ASP B 563 REMARK 465 GLU B 564 REMARK 465 LYS B 565 REMARK 465 ARG B 566 REMARK 465 LEU B 567 REMARK 465 LEU B 568 REMARK 465 ALA B 569 REMARK 465 THR B 667 REMARK 465 SER B 668 REMARK 465 HIS B 669 REMARK 465 HIS B 670 REMARK 465 HIS B 671 REMARK 465 HIS B 672 REMARK 465 HIS B 673 REMARK 465 HIS B 674 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 448 CG CD OE1 NE2 REMARK 470 ARG B 491 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 588 -53.84 -139.05 REMARK 500 ASP A 605 17.98 -152.85 REMARK 500 PRO B 463 153.55 -48.46 REMARK 500 TYR B 588 -53.77 -140.83 REMARK 500 ASP B 605 16.65 -154.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 519 OE2 REMARK 620 2 GLU A 624 O 91.7 REMARK 620 3 GLU B 519 OE2 175.7 86.4 REMARK 620 4 GLU B 624 O 93.9 168.0 87.2 REMARK 620 5 GLU B 624 OE1 90.3 102.4 93.9 88.1 REMARK 620 6 HOH B 859 O 82.9 90.7 93.2 79.5 165.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 600 OD1 REMARK 620 2 PRO A 603 O 87.4 REMARK 620 3 ASP A 605 OD1 81.6 86.8 REMARK 620 4 VAL A 607 O 75.1 153.9 71.8 REMARK 620 5 GLU A 612 OE1 111.1 124.2 145.8 80.7 REMARK 620 6 GLU A 612 OE2 96.9 72.9 159.6 127.6 53.5 REMARK 620 7 HOH A 861 O 161.6 96.3 80.6 94.7 81.7 101.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 635 OD1 REMARK 620 2 ASN A 637 OD1 76.6 REMARK 620 3 ASP A 639 OD1 82.7 76.2 REMARK 620 4 HIS A 641 O 96.3 155.4 79.5 REMARK 620 5 GLU A 646 OE1 110.9 127.9 153.7 76.6 REMARK 620 6 GLU A 646 OE2 95.3 76.8 152.7 127.6 51.6 REMARK 620 7 HOH A 816 O 162.8 91.9 82.1 88.8 86.3 94.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 517 OD1 REMARK 620 2 CYS B 650 O 85.5 REMARK 620 3 HOH B 803 O 63.1 59.0 REMARK 620 4 HOH B 871 O 141.6 80.8 79.1 REMARK 620 5 HOH B 877 O 93.8 154.8 98.4 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 708 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 518 O REMARK 620 2 ILE B 521 O 89.0 REMARK 620 3 FMT B 706 O2 172.1 95.5 REMARK 620 4 HOH B 829 O 83.9 147.9 95.5 REMARK 620 5 HOH B 850 O 90.4 104.1 82.3 107.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 600 OD1 REMARK 620 2 PRO B 603 O 74.1 REMARK 620 3 ASP B 605 OD1 114.8 74.3 REMARK 620 4 ASP B 605 OD2 80.6 91.5 45.4 REMARK 620 5 VAL B 607 O 84.4 151.6 99.2 66.4 REMARK 620 6 GLU B 612 OE1 112.7 127.6 131.8 140.5 77.6 REMARK 620 7 GLU B 612 OE2 89.9 77.0 134.3 166.8 122.0 52.0 REMARK 620 8 HOH B 811 O 171.0 100.7 56.3 92.3 98.0 76.3 96.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 635 OD1 REMARK 620 2 ASN B 637 OD1 74.4 REMARK 620 3 ASP B 639 OD1 77.7 76.2 REMARK 620 4 HIS B 641 O 87.0 149.7 76.6 REMARK 620 5 GLU B 646 OE1 115.9 127.5 154.0 82.0 REMARK 620 6 GLU B 646 OE2 89.8 75.6 151.4 129.0 54.4 REMARK 620 N 1 2 3 4 5 DBREF 7KBU A 431 663 UNP Q8N4S1 Q8N4S1_HUMAN 431 663 DBREF 7KBU B 431 663 UNP Q8N4S1 Q8N4S1_HUMAN 431 663 SEQADV 7KBU PHE A 664 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU ALA A 665 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU SER A 666 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU THR A 667 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU SER A 668 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS A 669 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS A 670 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS A 671 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS A 672 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS A 673 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS A 674 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU PHE B 664 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU ALA B 665 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU SER B 666 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU THR B 667 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU SER B 668 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS B 669 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS B 670 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS B 671 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS B 672 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS B 673 UNP Q8N4S1 EXPRESSION TAG SEQADV 7KBU HIS B 674 UNP Q8N4S1 EXPRESSION TAG SEQRES 1 A 244 ASP SER CYS MET SER PHE GLN CYS LYS ARG GLY HIS ILE SEQRES 2 A 244 CYS LYS ALA ASP GLN GLN GLY LYS PRO HIS CYS VAL CYS SEQRES 3 A 244 GLN ASP PRO VAL THR CYS PRO PRO THR LYS PRO LEU ASP SEQRES 4 A 244 GLN VAL CYS GLY THR ASP ASN GLN THR TYR ALA SER SER SEQRES 5 A 244 CYS HIS LEU PHE ALA THR LYS CYS ARG LEU GLU GLY THR SEQRES 6 A 244 LYS LYS GLY HIS GLN LEU GLN LEU ASP TYR PHE GLY ALA SEQRES 7 A 244 CYS LYS SER ILE PRO THR CYS THR ASP PHE GLU VAL ILE SEQRES 8 A 244 GLN PHE PRO LEU ARG MET ARG ASP TRP LEU LYS ASN ILE SEQRES 9 A 244 LEU MET GLN LEU TYR GLU ALA ASN SER GLU HIS ALA GLY SEQRES 10 A 244 TYR LEU ASN GLU LYS GLN ARG ASN LYS VAL LYS LYS ILE SEQRES 11 A 244 TYR LEU ASP GLU LYS ARG LEU LEU ALA GLY ASP HIS PRO SEQRES 12 A 244 ILE ASP LEU LEU LEU ARG ASP PHE LYS LYS ASN TYR HIS SEQRES 13 A 244 MET TYR VAL TYR PRO VAL HIS TRP GLN PHE SER GLU LEU SEQRES 14 A 244 ASP GLN HIS PRO MET ASP ARG VAL LEU THR HIS SER GLU SEQRES 15 A 244 LEU ALA PRO LEU ARG ALA SER LEU VAL PRO MET GLU HIS SEQRES 16 A 244 CYS ILE THR ARG PHE PHE GLU GLU CYS ASP PRO ASN LYS SEQRES 17 A 244 ASP LYS HIS ILE THR LEU LYS GLU TRP GLY HIS CYS PHE SEQRES 18 A 244 GLY ILE LYS GLU GLU ASP ILE ASP GLU ASN LEU LEU PHE SEQRES 19 A 244 ALA SER THR SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 244 ASP SER CYS MET SER PHE GLN CYS LYS ARG GLY HIS ILE SEQRES 2 B 244 CYS LYS ALA ASP GLN GLN GLY LYS PRO HIS CYS VAL CYS SEQRES 3 B 244 GLN ASP PRO VAL THR CYS PRO PRO THR LYS PRO LEU ASP SEQRES 4 B 244 GLN VAL CYS GLY THR ASP ASN GLN THR TYR ALA SER SER SEQRES 5 B 244 CYS HIS LEU PHE ALA THR LYS CYS ARG LEU GLU GLY THR SEQRES 6 B 244 LYS LYS GLY HIS GLN LEU GLN LEU ASP TYR PHE GLY ALA SEQRES 7 B 244 CYS LYS SER ILE PRO THR CYS THR ASP PHE GLU VAL ILE SEQRES 8 B 244 GLN PHE PRO LEU ARG MET ARG ASP TRP LEU LYS ASN ILE SEQRES 9 B 244 LEU MET GLN LEU TYR GLU ALA ASN SER GLU HIS ALA GLY SEQRES 10 B 244 TYR LEU ASN GLU LYS GLN ARG ASN LYS VAL LYS LYS ILE SEQRES 11 B 244 TYR LEU ASP GLU LYS ARG LEU LEU ALA GLY ASP HIS PRO SEQRES 12 B 244 ILE ASP LEU LEU LEU ARG ASP PHE LYS LYS ASN TYR HIS SEQRES 13 B 244 MET TYR VAL TYR PRO VAL HIS TRP GLN PHE SER GLU LEU SEQRES 14 B 244 ASP GLN HIS PRO MET ASP ARG VAL LEU THR HIS SER GLU SEQRES 15 B 244 LEU ALA PRO LEU ARG ALA SER LEU VAL PRO MET GLU HIS SEQRES 16 B 244 CYS ILE THR ARG PHE PHE GLU GLU CYS ASP PRO ASN LYS SEQRES 17 B 244 ASP LYS HIS ILE THR LEU LYS GLU TRP GLY HIS CYS PHE SEQRES 18 B 244 GLY ILE LYS GLU GLU ASP ILE ASP GLU ASN LEU LEU PHE SEQRES 19 B 244 ALA SER THR SER HIS HIS HIS HIS HIS HIS HET NAG C 1 26 HET NAG C 2 27 HET NAG D 1 26 HET NAG D 2 27 HET CA A 701 1 HET CA A 702 1 HET FMT A 703 4 HET CL A 704 1 HET CL A 705 1 HET CL A 706 1 HET CA B 701 1 HET CA B 702 1 HET CA B 703 1 HET CA B 704 1 HET FMT B 705 4 HET FMT B 706 4 HET FMT B 707 4 HET NA B 708 1 HET CL B 709 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM FMT FORMIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 CA 6(CA 2+) FORMUL 7 FMT 4(C H2 O2) FORMUL 8 CL 4(CL 1-) FORMUL 18 NA NA 1+ FORMUL 20 HOH *161(H2 O) HELIX 1 AA1 ASP A 458 CYS A 462 5 5 HELIX 2 AA2 LYS A 466 ASP A 469 5 4 HELIX 3 AA3 SER A 481 LEU A 492 1 12 HELIX 4 AA4 THR A 495 LEU A 501 1 7 HELIX 5 AA5 THR A 516 ILE A 521 1 6 HELIX 6 AA6 PRO A 524 SER A 543 1 20 HELIX 7 AA7 TYR A 561 ALA A 569 1 9 HELIX 8 AA8 HIS A 572 LEU A 578 1 7 HELIX 9 AA9 ASP A 580 ASN A 584 5 5 HELIX 10 AB1 TYR A 588 ASP A 600 1 13 HELIX 11 AB2 THR A 609 HIS A 625 1 17 HELIX 12 AB3 ARG A 629 CYS A 634 1 6 HELIX 13 AB4 LEU A 644 PHE A 651 1 8 HELIX 14 AB5 LYS A 654 ILE A 658 5 5 HELIX 15 AB6 ASP A 659 LEU A 663 5 5 HELIX 16 AB7 ASP B 458 CYS B 462 5 5 HELIX 17 AB8 LYS B 466 ASP B 469 5 4 HELIX 18 AB9 SER B 481 LEU B 492 1 12 HELIX 19 AC1 THR B 495 LEU B 501 1 7 HELIX 20 AC2 THR B 516 ILE B 521 1 6 HELIX 21 AC3 PRO B 524 ASN B 542 1 19 HELIX 22 AC4 HIS B 572 ASN B 584 1 13 HELIX 23 AC5 TYR B 588 ASP B 600 1 13 HELIX 24 AC6 THR B 609 HIS B 625 1 17 HELIX 25 AC7 ARG B 629 CYS B 634 1 6 HELIX 26 AC8 LEU B 644 PHE B 651 1 8 HELIX 27 AC9 LYS B 654 ILE B 658 5 5 HELIX 28 AD1 ASP B 659 LEU B 663 5 5 SHEET 1 AA1 2 HIS A 442 ALA A 446 0 SHEET 2 AA1 2 PRO A 452 CYS A 456 -1 O VAL A 455 N ILE A 443 SHEET 1 AA2 3 THR A 478 TYR A 479 0 SHEET 2 AA2 3 VAL A 471 GLY A 473 -1 N VAL A 471 O TYR A 479 SHEET 3 AA2 3 LEU A 503 PHE A 506 -1 O TYR A 505 N CYS A 472 SHEET 1 AA3 2 VAL A 607 LEU A 608 0 SHEET 2 AA3 2 ILE A 642 THR A 643 -1 O ILE A 642 N LEU A 608 SHEET 1 AA4 3 THR B 478 TYR B 479 0 SHEET 2 AA4 3 VAL B 471 GLY B 473 -1 N VAL B 471 O TYR B 479 SHEET 3 AA4 3 LEU B 503 PHE B 506 -1 O TYR B 505 N CYS B 472 SHEET 1 AA5 2 VAL B 607 LEU B 608 0 SHEET 2 AA5 2 ILE B 642 THR B 643 -1 O ILE B 642 N LEU B 608 SSBOND 1 CYS A 433 CYS A 444 1555 1555 2.07 SSBOND 2 CYS A 438 CYS A 454 1555 1555 2.06 SSBOND 3 CYS A 456 CYS A 490 1555 1555 2.07 SSBOND 4 CYS A 462 CYS A 483 1555 1555 2.07 SSBOND 5 CYS A 472 CYS A 509 1555 1555 2.07 SSBOND 6 CYS A 515 CYS A 626 1555 1555 2.03 SSBOND 7 CYS A 634 CYS A 650 1555 1555 2.05 SSBOND 8 CYS B 438 CYS B 454 1555 1555 2.04 SSBOND 9 CYS B 456 CYS B 490 1555 1555 2.04 SSBOND 10 CYS B 462 CYS B 483 1555 1555 2.05 SSBOND 11 CYS B 472 CYS B 509 1555 1555 2.09 SSBOND 12 CYS B 515 CYS B 626 1555 1555 2.01 SSBOND 13 CYS B 634 CYS B 650 1555 1555 2.04 LINK ND2 ASN A 476 C1 NAG C 1 1555 1555 1.51 LINK ND2 ASN B 476 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.31 LINK OE2 GLU A 519 CA CA B 704 1555 1555 2.32 LINK OD1 ASP A 600 CA CA A 701 1555 1555 2.23 LINK O PRO A 603 CA CA A 701 1555 1555 2.44 LINK OD1 ASP A 605 CA CA A 701 1555 1555 2.53 LINK O VAL A 607 CA CA A 701 1555 1555 2.32 LINK OE1 GLU A 612 CA CA A 701 1555 1555 2.55 LINK OE2 GLU A 612 CA CA A 701 1555 1555 2.32 LINK O GLU A 624 CA CA B 704 1555 1555 2.43 LINK OD1 ASP A 635 CA CA A 702 1555 1555 2.20 LINK OD1 ASN A 637 CA CA A 702 1555 1555 2.47 LINK OD1 ASP A 639 CA CA A 702 1555 1555 2.38 LINK O HIS A 641 CA CA A 702 1555 1555 2.21 LINK OE1 GLU A 646 CA CA A 702 1555 1555 2.52 LINK OE2 GLU A 646 CA CA A 702 1555 1555 2.50 LINK CA CA A 701 O HOH A 861 1555 1555 2.28 LINK CA CA A 702 O HOH A 816 1555 1555 2.29 LINK OD1 ASP B 517 CA CA B 703 1555 1555 2.49 LINK O PHE B 518 NA NA B 708 1555 1555 2.23 LINK OE2 GLU B 519 CA CA B 704 1555 1555 2.34 LINK O ILE B 521 NA NA B 708 1555 1555 2.47 LINK OD1 ASP B 600 CA CA B 701 1555 1555 2.37 LINK O PRO B 603 CA CA B 701 1555 1555 2.37 LINK OD1 ASP B 605 CA CA B 701 1555 1555 3.00 LINK OD2 ASP B 605 CA CA B 701 1555 1555 2.51 LINK O VAL B 607 CA CA B 701 1555 1555 2.41 LINK OE1 GLU B 612 CA CA B 701 1555 1555 2.65 LINK OE2 GLU B 612 CA CA B 701 1555 1555 2.38 LINK O GLU B 624 CA CA B 704 1555 1555 2.43 LINK OE1 GLU B 624 CA CA B 704 1555 1555 2.48 LINK OD1 ASP B 635 CA CA B 702 1555 1555 2.33 LINK OD1 ASN B 637 CA CA B 702 1555 1555 2.43 LINK OD1 ASP B 639 CA CA B 702 1555 1555 2.42 LINK O HIS B 641 CA CA B 702 1555 1555 2.26 LINK OE1 GLU B 646 CA CA B 702 1555 1555 2.46 LINK OE2 GLU B 646 CA CA B 702 1555 1555 2.37 LINK O CYS B 650 CA CA B 703 1555 1555 2.50 LINK CA CA B 701 O HOH B 811 1555 1555 2.36 LINK CA CA B 703 O HOH B 803 1555 1555 2.79 LINK CA CA B 703 O HOH B 871 1555 1555 2.73 LINK CA CA B 703 O HOH B 877 1555 1555 2.57 LINK CA CA B 704 O HOH B 859 1555 1555 2.33 LINK O2 FMT B 706 NA NA B 708 1555 1555 2.35 LINK NA NA B 708 O HOH B 829 1555 1555 2.49 LINK NA NA B 708 O HOH B 850 1555 1555 2.37 CISPEP 1 HIS A 602 PRO A 603 0 -1.67 CISPEP 2 HIS B 602 PRO B 603 0 -3.01 CRYST1 57.657 132.289 149.225 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017344 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006701 0.00000