HEADER TRANSFERASE/INHIBITOR 05-OCT-20 7KCC TITLE CRYSTAL STRUCTURE OF HUMAN METHIONINE ADENOSYLTRANSFERASE 2A (MAT2A) TITLE 2 IN COMPLEX WITH SAM AND ALLOSTERIC INHIBITOR AG-270 COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADOMET SYNTHASE 2,METHIONINE ADENOSYLTRANSFERASE 2,MAT 2, COMPND 5 METHIONINE ADENOSYLTRANSFERASE II,MAT-II; COMPND 6 EC: 2.5.1.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAT2A, AMS2, MATA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHIONINE ADENOSYLTRANSFERASE, SAM, ALLOSTERIC INHIBITOR, KEYWDS 2 TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.PADYANA,L.JIN REVDAT 3 18-OCT-23 7KCC 1 REMARK REVDAT 2 05-MAY-21 7KCC 1 JRNL REVDAT 1 21-APR-21 7KCC 0 JRNL AUTH Z.KONTEATIS,J.TRAVINS,S.GROSS,K.MARJON,A.BARNETT,E.MANDLEY, JRNL AUTH 2 B.NICOLAY,R.NAGARAJA,Y.CHEN,Y.SUN,Z.LIU,J.YU,Z.YE,F.JIANG, JRNL AUTH 3 W.WEI,C.FANG,Y.GAO,P.KALEV,M.L.HYER,B.DELABARRE,L.JIN, JRNL AUTH 4 A.K.PADYANA,L.DANG,J.MURTIE,S.A.BILLER,Z.SUI,K.M.MARKS JRNL TITL DISCOVERY OF AG-270, A FIRST-IN-CLASS ORAL MAT2A INHIBITOR JRNL TITL 2 FOR THE TREATMENT OF TUMORS WITH HOMOZYGOUS MTAP DELETION. JRNL REF J.MED.CHEM. V. 64 4430 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33829783 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01895 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 77093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0300 - 4.0200 1.00 3120 204 0.1309 0.1515 REMARK 3 2 4.0200 - 3.1900 1.00 3056 149 0.0985 0.1349 REMARK 3 3 3.1900 - 2.7900 1.00 2996 171 0.0998 0.1287 REMARK 3 4 2.7900 - 2.5300 1.00 2958 179 0.1024 0.1343 REMARK 3 5 2.5300 - 2.3500 1.00 2958 154 0.0958 0.1136 REMARK 3 6 2.3500 - 2.2100 1.00 3006 156 0.0940 0.1127 REMARK 3 7 2.2100 - 2.1000 1.00 2949 168 0.0968 0.1099 REMARK 3 8 2.1000 - 2.0100 1.00 2951 147 0.0961 0.1226 REMARK 3 9 2.0100 - 1.9300 1.00 2977 155 0.0990 0.1387 REMARK 3 10 1.9300 - 1.8700 1.00 2957 159 0.1032 0.1254 REMARK 3 11 1.8700 - 1.8100 1.00 2956 153 0.1017 0.1242 REMARK 3 12 1.8100 - 1.7600 1.00 2936 147 0.1079 0.1351 REMARK 3 13 1.7600 - 1.7100 1.00 2944 152 0.1132 0.1301 REMARK 3 14 1.7100 - 1.6700 1.00 2955 165 0.1157 0.1304 REMARK 3 15 1.6700 - 1.6300 1.00 2934 155 0.1161 0.1461 REMARK 3 16 1.6300 - 1.6000 1.00 2947 162 0.1165 0.1374 REMARK 3 17 1.6000 - 1.5600 1.00 2935 139 0.1231 0.1377 REMARK 3 18 1.5600 - 1.5400 0.97 2845 165 0.1293 0.1438 REMARK 3 19 1.5400 - 1.5100 0.94 2743 145 0.1371 0.1723 REMARK 3 20 1.5100 - 1.4800 0.90 2645 128 0.1538 0.1682 REMARK 3 21 1.4800 - 1.4600 0.87 2529 151 0.1624 0.1860 REMARK 3 22 1.4600 - 1.4400 0.82 2418 127 0.1773 0.2019 REMARK 3 23 1.4400 - 1.4100 0.74 2182 112 0.1881 0.2321 REMARK 3 24 1.4100 - 1.3900 0.67 1947 120 0.2014 0.1989 REMARK 3 25 1.3900 - 1.3800 0.59 1729 99 0.2130 0.2677 REMARK 3 26 1.3800 - 1.3600 0.51 1520 68 0.2248 0.2543 REMARK 3 27 1.3600 - 1.3400 0.42 1228 57 0.2370 0.2416 REMARK 3 28 1.3400 - 1.3200 0.29 836 49 0.2444 0.2873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.095 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3296 REMARK 3 ANGLE : 1.066 4486 REMARK 3 CHIRALITY : 0.083 492 REMARK 3 PLANARITY : 0.008 593 REMARK 3 DIHEDRAL : 19.133 1275 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8495 9.3892 -23.3766 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0200 REMARK 3 T33: 0.0390 T12: -0.0101 REMARK 3 T13: 0.0057 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.5968 L22: 0.8482 REMARK 3 L33: 1.0850 L12: -0.4390 REMARK 3 L13: 0.8933 L23: -0.2806 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.0386 S13: 0.0284 REMARK 3 S21: -0.0341 S22: 0.0225 S23: 0.0039 REMARK 3 S31: -0.0578 S32: 0.0601 S33: 0.0346 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4022 0.5368 -9.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0570 REMARK 3 T33: 0.0379 T12: 0.0025 REMARK 3 T13: -0.0096 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.2517 L22: 2.2137 REMARK 3 L33: 1.3888 L12: -1.1497 REMARK 3 L13: -1.0938 L23: 0.8389 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.0100 S13: -0.0647 REMARK 3 S21: 0.0416 S22: 0.0107 S23: -0.0221 REMARK 3 S31: -0.0051 S32: 0.0577 S33: 0.0277 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3729 15.9347 -5.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.0478 T22: 0.0640 REMARK 3 T33: 0.0453 T12: -0.0208 REMARK 3 T13: -0.0133 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.8076 L22: 5.1821 REMARK 3 L33: 2.1980 L12: -2.0279 REMARK 3 L13: 0.0277 L23: 0.0279 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: -0.0326 S13: 0.1079 REMARK 3 S21: 0.1001 S22: 0.0198 S23: -0.1147 REMARK 3 S31: -0.0697 S32: 0.1044 S33: 0.0236 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7611 2.1140 -23.7157 REMARK 3 T TENSOR REMARK 3 T11: 0.0192 T22: 0.0536 REMARK 3 T33: 0.0648 T12: -0.0147 REMARK 3 T13: 0.0005 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1495 L22: 0.7201 REMARK 3 L33: 0.4736 L12: -0.2208 REMARK 3 L13: 0.0479 L23: -0.1432 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0035 S13: 0.0179 REMARK 3 S21: -0.0170 S22: -0.0127 S23: -0.0619 REMARK 3 S31: 0.0168 S32: 0.0444 S33: 0.0156 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7808 23.1548 -28.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.0459 REMARK 3 T33: 0.0631 T12: -0.0008 REMARK 3 T13: 0.0000 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.4686 L22: 1.3302 REMARK 3 L33: 1.1055 L12: -0.2421 REMARK 3 L13: 0.0363 L23: 0.6455 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.0144 S13: 0.0684 REMARK 3 S21: -0.0862 S22: -0.0041 S23: 0.0110 REMARK 3 S31: -0.1272 S32: 0.0001 S33: -0.0106 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8759 26.9373 -35.3613 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.0466 REMARK 3 T33: 0.0887 T12: 0.0073 REMARK 3 T13: -0.0005 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.9339 L22: 1.2059 REMARK 3 L33: 1.8997 L12: 1.1386 REMARK 3 L13: -0.8263 L23: 0.3849 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.2024 S13: 0.2260 REMARK 3 S21: -0.1760 S22: 0.1041 S23: 0.0785 REMARK 3 S31: -0.1976 S32: -0.0165 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4003 1.7877 -31.8355 REMARK 3 T TENSOR REMARK 3 T11: 0.0518 T22: 0.0511 REMARK 3 T33: 0.0525 T12: -0.0078 REMARK 3 T13: 0.0013 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.3195 L22: 0.3447 REMARK 3 L33: 0.1961 L12: -0.1746 REMARK 3 L13: 0.0009 L23: 0.0454 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0271 S13: -0.0043 REMARK 3 S21: -0.0352 S22: -0.0053 S23: -0.0070 REMARK 3 S31: -0.0014 S32: 0.0246 S33: 0.0031 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5011 -5.3605 -38.5124 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0652 REMARK 3 T33: 0.0964 T12: 0.0143 REMARK 3 T13: 0.0318 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.2147 L22: 0.5109 REMARK 3 L33: 4.7271 L12: -0.8309 REMARK 3 L13: 1.1422 L23: -1.0333 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: 0.2168 S13: -0.0621 REMARK 3 S21: -0.1684 S22: -0.0781 S23: -0.0927 REMARK 3 S31: 0.3349 S32: 0.2837 S33: -0.0908 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0194 7.7781 -29.1553 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.0566 REMARK 3 T33: 0.0832 T12: -0.0198 REMARK 3 T13: 0.0042 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.2318 L22: 1.1669 REMARK 3 L33: 1.6138 L12: -0.0973 REMARK 3 L13: -0.0193 L23: -0.0205 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.0667 S13: 0.0932 REMARK 3 S21: -0.0577 S22: 0.0034 S23: -0.1490 REMARK 3 S31: -0.1002 S32: 0.1120 S33: -0.0350 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000251860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97776 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77099 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 47.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2P02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LICL, 0.1 M TRIS PH 8.0, (16% REMARK 280 -22%) PEG6000, 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.07400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.02750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.44900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.07400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.02750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.44900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.07400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.02750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.44900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.07400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.02750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.44900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 644 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 814 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 854 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 995 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1010 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 PHE A 8 REMARK 465 HIS A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 PHE A 12 REMARK 465 ILE A 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 177 O HOH A 502 1.53 REMARK 500 HH12 ARG A 362 O HOH A 504 1.57 REMARK 500 O HOH A 974 O HOH A 1006 1.84 REMARK 500 O HOH A 563 O HOH A 755 1.84 REMARK 500 O HOH A 527 O HOH A 783 1.85 REMARK 500 O HOH A 804 O HOH A 913 1.94 REMARK 500 O HOH A 767 O HOH A 862 1.94 REMARK 500 O HOH A 554 O HOH A 865 1.96 REMARK 500 O HOH A 681 O HOH A 693 2.00 REMARK 500 O HOH A 905 O HOH A 1023 2.03 REMARK 500 O HOH A 706 O HOH A 876 2.03 REMARK 500 O HOH A 566 O HOH A 656 2.06 REMARK 500 OE1 GLU A 15 O HOH A 501 2.06 REMARK 500 O HOH A 723 O HOH A 842 2.07 REMARK 500 O HOH A 512 O HOH A 859 2.09 REMARK 500 O HOH A 716 O HOH A 869 2.11 REMARK 500 O HOH A 507 O HOH A 971 2.14 REMARK 500 O HOH A 836 O HOH A 865 2.15 REMARK 500 O HOH A 502 O HOH A 670 2.16 REMARK 500 O HOH A 627 O HOH A 792 2.17 REMARK 500 O HOH A 509 O HOH A 938 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 797 O HOH A 1006 2555 2.04 REMARK 500 O HOH A 534 O HOH A 798 4554 2.13 REMARK 500 O HOH A 537 O HOH A 1006 2555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 173 75.52 -117.97 REMARK 500 VAL A 226 -67.72 -108.74 REMARK 500 THR A 270 -99.73 -118.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1029 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1030 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1031 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A1032 DISTANCE = 7.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WBG A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KCE RELATED DB: PDB REMARK 900 RELATED ID: 7KCF RELATED DB: PDB REMARK 900 RELATED ID: 7KDA RELATED DB: PDB REMARK 900 RELATED ID: 7KDB RELATED DB: PDB DBREF 7KCC A 1 395 UNP P31153 METK2_HUMAN 1 395 SEQADV 7KCC SER A 0 UNP P31153 EXPRESSION TAG SEQRES 1 A 396 SER MET ASN GLY GLN LEU ASN GLY PHE HIS GLU ALA PHE SEQRES 2 A 396 ILE GLU GLU GLY THR PHE LEU PHE THR SER GLU SER VAL SEQRES 3 A 396 GLY GLU GLY HIS PRO ASP LYS ILE CYS ASP GLN ILE SER SEQRES 4 A 396 ASP ALA VAL LEU ASP ALA HIS LEU GLN GLN ASP PRO ASP SEQRES 5 A 396 ALA LYS VAL ALA CYS GLU THR VAL ALA LYS THR GLY MET SEQRES 6 A 396 ILE LEU LEU ALA GLY GLU ILE THR SER ARG ALA ALA VAL SEQRES 7 A 396 ASP TYR GLN LYS VAL VAL ARG GLU ALA VAL LYS HIS ILE SEQRES 8 A 396 GLY TYR ASP ASP SER SER LYS GLY PHE ASP TYR LYS THR SEQRES 9 A 396 CYS ASN VAL LEU VAL ALA LEU GLU GLN GLN SER PRO ASP SEQRES 10 A 396 ILE ALA GLN GLY VAL HIS LEU ASP ARG ASN GLU GLU ASP SEQRES 11 A 396 ILE GLY ALA GLY ASP GLN GLY LEU MET PHE GLY TYR ALA SEQRES 12 A 396 THR ASP GLU THR GLU GLU CYS MET PRO LEU THR ILE VAL SEQRES 13 A 396 LEU ALA HIS LYS LEU ASN ALA LYS LEU ALA GLU LEU ARG SEQRES 14 A 396 ARG ASN GLY THR LEU PRO TRP LEU ARG PRO ASP SER LYS SEQRES 15 A 396 THR GLN VAL THR VAL GLN TYR MET GLN ASP ARG GLY ALA SEQRES 16 A 396 VAL LEU PRO ILE ARG VAL HIS THR ILE VAL ILE SER VAL SEQRES 17 A 396 GLN HIS ASP GLU GLU VAL CYS LEU ASP GLU MET ARG ASP SEQRES 18 A 396 ALA LEU LYS GLU LYS VAL ILE LYS ALA VAL VAL PRO ALA SEQRES 19 A 396 LYS TYR LEU ASP GLU ASP THR ILE TYR HIS LEU GLN PRO SEQRES 20 A 396 SER GLY ARG PHE VAL ILE GLY GLY PRO GLN GLY ASP ALA SEQRES 21 A 396 GLY LEU THR GLY ARG LYS ILE ILE VAL ASP THR TYR GLY SEQRES 22 A 396 GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SER GLY LYS SEQRES 23 A 396 ASP TYR THR LYS VAL ASP ARG SER ALA ALA TYR ALA ALA SEQRES 24 A 396 ARG TRP VAL ALA LYS SER LEU VAL LYS GLY GLY LEU CYS SEQRES 25 A 396 ARG ARG VAL LEU VAL GLN VAL SER TYR ALA ILE GLY VAL SEQRES 26 A 396 SER HIS PRO LEU SER ILE SER ILE PHE HIS TYR GLY THR SEQRES 27 A 396 SER GLN LYS SER GLU ARG GLU LEU LEU GLU ILE VAL LYS SEQRES 28 A 396 LYS ASN PHE ASP LEU ARG PRO GLY VAL ILE VAL ARG ASP SEQRES 29 A 396 LEU ASP LEU LYS LYS PRO ILE TYR GLN ARG THR ALA ALA SEQRES 30 A 396 TYR GLY HIS PHE GLY ARG ASP SER PHE PRO TRP GLU VAL SEQRES 31 A 396 PRO LYS LYS LEU LYS TYR HET CL A 401 1 HET EDO A 402 20 HET EDO A 403 20 HET EDO A 404 10 HET CL A 405 1 HET EDO A 406 10 HET SAM A 407 48 HET WBG A 408 64 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SAM S-ADENOSYLMETHIONINE HETNAM WBG 3-(CYCLOHEX-1-EN-1-YL)-6-(4-METHOXYPHENYL)-2-PHENYL-5- HETNAM 2 WBG [(PYRIDIN-2-YL)AMINO]PYRAZOLO[1,5-A]PYRIMIDIN-7(4H)- HETNAM 3 WBG ONE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CL 2(CL 1-) FORMUL 3 EDO 4(C2 H6 O2) FORMUL 8 SAM C15 H22 N6 O5 S FORMUL 9 WBG C30 H27 N5 O2 FORMUL 10 HOH *532(H2 O) HELIX 1 AA1 HIS A 29 ASP A 49 1 21 HELIX 2 AA2 ASP A 78 GLY A 91 1 14 HELIX 3 AA3 SER A 95 GLY A 98 5 4 HELIX 4 AA4 SER A 114 HIS A 122 1 9 HELIX 5 AA5 ASN A 126 ILE A 130 5 5 HELIX 6 AA6 PRO A 151 ASN A 170 1 20 HELIX 7 AA7 CYS A 214 LYS A 225 1 12 HELIX 8 AA8 PRO A 232 LEU A 236 5 5 HELIX 9 AA9 GLY A 253 GLY A 257 5 5 HELIX 10 AB1 LYS A 289 GLY A 308 1 20 HELIX 11 AB2 SER A 341 PHE A 353 1 13 HELIX 12 AB3 ARG A 356 ASP A 365 1 10 HELIX 13 AB4 ILE A 370 ALA A 375 5 6 HELIX 14 AB5 PHE A 385 VAL A 389 5 5 SHEET 1 AA1 4 THR A 17 VAL A 25 0 SHEET 2 AA1 4 LEU A 176 ASP A 191 -1 O TYR A 188 N PHE A 18 SHEET 3 AA1 4 ALA A 194 HIS A 209 -1 O ILE A 198 N GLN A 187 SHEET 4 AA1 4 ILE A 241 LEU A 244 1 O HIS A 243 N ILE A 203 SHEET 1 AA2 4 ASN A 105 GLU A 111 0 SHEET 2 AA2 4 MET A 64 THR A 72 1 N LEU A 67 O ALA A 109 SHEET 3 AA2 4 LYS A 53 LYS A 61 -1 N LYS A 61 O MET A 64 SHEET 4 AA2 4 GLY A 260 LEU A 261 -1 O GLY A 260 N ALA A 60 SHEET 1 AA3 2 ASP A 93 ASP A 94 0 SHEET 2 AA3 2 PHE A 99 ASP A 100 -1 O PHE A 99 N ASP A 94 SHEET 1 AA4 3 GLY A 136 THR A 143 0 SHEET 2 AA4 3 ARG A 313 TYR A 320 -1 O VAL A 316 N GLY A 140 SHEET 3 AA4 3 SER A 329 PHE A 333 -1 O PHE A 333 N LEU A 315 SITE 1 AC1 5 HIS A 29 ASP A 134 LYS A 181 LYS A 265 SITE 2 AC1 5 SAM A 407 SITE 1 AC2 12 ASP A 124 ARG A 125 ASN A 126 LYS A 228 SITE 2 AC2 12 ALA A 229 VAL A 230 VAL A 231 PRO A 232 SITE 3 AC2 12 HOH A 527 HOH A 553 HOH A 556 HOH A 775 SITE 1 AC3 9 GLN A 112 SER A 114 PRO A 115 ILE A 252 SITE 2 AC3 9 GLN A 256 HOH A 505 HOH A 539 HOH A 606 SITE 3 AC3 9 HOH A 893 SITE 1 AC4 3 LEU A 393 LYS A 394 TYR A 395 SITE 1 AC5 5 TRP A 274 GLY A 275 ARG A 313 WBG A 408 SITE 2 AC5 5 HOH A 576 SITE 1 AC6 4 HIS A 209 GLY A 248 ARG A 249 HOH A 757 SITE 1 AC7 22 HIS A 29 PRO A 30 ALA A 55 GLU A 70 SITE 2 AC7 22 GLN A 113 ASP A 116 ILE A 117 GLY A 133 SITE 3 AC7 22 ASP A 134 ASP A 179 LYS A 181 SER A 247 SITE 4 AC7 22 ARG A 249 PHE A 250 ASP A 258 LYS A 289 SITE 5 AC7 22 CL A 401 HOH A 637 HOH A 641 HOH A 643 SITE 6 AC7 22 HOH A 683 HOH A 748 SITE 1 AC8 18 THR A 17 PHE A 18 PHE A 20 GLN A 190 SITE 2 AC8 18 ARG A 192 GLY A 193 ALA A 194 GLY A 273 SITE 3 AC8 18 TRP A 274 ARG A 313 LEU A 315 SER A 331 SITE 4 AC8 18 ILE A 332 PHE A 333 GLU A 342 CL A 405 SITE 5 AC8 18 HOH A 742 HOH A 819 CRYST1 68.148 94.055 116.898 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008554 0.00000