HEADER VIRAL PROTEIN 08-OCT-20 7KD4 TITLE STRUCTURE OF THE C-TERMINAL DOMAIN OF THE MENANGLE VIRUS TITLE 2 PHOSPHOPROTEIN (RESIDUES 329 -388), FUSED TO MBP. SPACE GROUP P21. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN-BINDING PROTEIN AND PHOSPHOPROTEIN FUSION COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA SP. (STRAIN FS14), MENANGLE VIRUS; SOURCE 3 ORGANISM_TAXID: 1327989, 152219; SOURCE 4 STRAIN: FS14; SOURCE 5 GENE: MALE, JW3994, V/P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARAMYXOVIRUS, PARARUBULAVIRUS, RNA-DEPENDENT RNA POLYMERASE, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.N.WEBBY,R.L.KINGSTON REVDAT 3 18-OCT-23 7KD4 1 REMARK REVDAT 2 13-OCT-21 7KD4 1 JRNL REVDAT 1 15-SEP-21 7KD4 0 JRNL AUTH M.N.WEBBY,N.HERR,E.M.M.BULLOCH,M.SCHMITZ,J.R.KEOWN, JRNL AUTH 2 D.C.GOLDSTONE,R.L.KINGSTON JRNL TITL STRUCTURAL ANALYSIS OF THE MENANGLE VIRUS P PROTEIN REVEALS JRNL TITL 2 A SOFT BOUNDARY BETWEEN ORDERED AND DISORDERED REGIONS. JRNL REF VIRUSES V. 13 2021 JRNL REFN ESSN 1999-4915 JRNL PMID 34578318 JRNL DOI 10.3390/V13091737 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 2018/03/05 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 3 NUMBER OF REFLECTIONS : 149527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 7389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.4070 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 1321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78700 REMARK 3 B22 (A**2) : -0.35400 REMARK 3 B33 (A**2) : 1.28100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.76300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7324 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10023 ; 1.454 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 988 ; 5.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 340 ;32.487 ;24.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1310 ;12.580 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 997 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5498 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3699 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4933 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 918 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3585 ; 1.139 ; 1.016 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4512 ; 1.488 ; 1.532 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3739 ; 1.863 ; 1.248 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5449 ; 2.277 ; 1.798 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7324 ; 1.737 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 795 ;24.246 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7668 ;10.995 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 149703 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 59.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 2.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KYC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.65 M AMMONIUM SULPHATE, 0.2M MALIC REMARK 280 ACID/KOH PH 5.5, CRYSTALS WERE TRANSFERRED INTO THE FOLLOWING REMARK 280 CRYO-PROTECTIVE SOLUTION BEFORE VITRIFICATION: 1.65 M AMMONIUM REMARK 280 SULPHATE, 0.2M MALIC ACID/KOH PH 5.5, 5MM MALTOSE, 1 M LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.03700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS B 1 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 1377 NH1 ARG A 1380 1.78 REMARK 500 O HOH B 1672 O HOH B 2055 1.88 REMARK 500 O HOH A 1637 O HOH A 1823 2.16 REMARK 500 O HOH B 1985 O HOH B 2123 2.17 REMARK 500 OD2 ASP B 95 O HOH B 1501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1883 O HOH B 2057 2545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -167.21 -120.76 REMARK 500 LEU A 122 82.46 -151.91 REMARK 500 LYS A 144 -165.61 -120.24 REMARK 500 ALA A 168 -78.36 -78.83 REMARK 500 TYR A 283 -55.91 -122.73 REMARK 500 ASP B 55 -165.70 -116.49 REMARK 500 ALA B 168 -72.55 -83.42 REMARK 500 TYR B 283 -56.26 -120.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2144 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A2145 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2146 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2147 DISTANCE = 8.74 ANGSTROMS REMARK 525 HOH B2165 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B2166 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B2167 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B2168 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B2169 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B2170 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B2171 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH B2172 DISTANCE = 9.42 ANGSTROMS REMARK 525 HOH B2173 DISTANCE = 9.64 ANGSTROMS REMARK 525 HOH B2174 DISTANCE = 9.94 ANGSTROMS DBREF1 7KD4 A 1 370 UNP A0A4P1LXE0_SERSF DBREF2 7KD4 A A0A4P1LXE0 3 372 DBREF 7KD4 A 1329 1388 UNP Q91MK1 Q91MK1_9MONO 329 388 DBREF1 7KD4 B 1 370 UNP A0A4P1LXE0_SERSF DBREF2 7KD4 B A0A4P1LXE0 3 372 DBREF 7KD4 B 1329 1388 UNP Q91MK1 Q91MK1_9MONO 329 388 SEQADV 7KD4 MET A 0 UNP A0A4P1LXE INITIATING METHIONINE SEQADV 7KD4 ALA A 82 UNP A0A4P1LXE ASP 84 CONFLICT SEQADV 7KD4 ALA A 83 UNP A0A4P1LXE LYS 85 CONFLICT SEQADV 7KD4 ALA A 359 UNP A0A4P1LXE GLU 361 CONFLICT SEQADV 7KD4 ALA A 362 UNP A0A4P1LXE LYS 364 CONFLICT SEQADV 7KD4 ALA A 363 UNP A0A4P1LXE ASP 365 CONFLICT SEQADV 7KD4 SER A 1352 UNP Q91MK1 CYS 352 ENGINEERED MUTATION SEQADV 7KD4 MET B 0 UNP A0A4P1LXE INITIATING METHIONINE SEQADV 7KD4 ALA B 82 UNP A0A4P1LXE ASP 84 CONFLICT SEQADV 7KD4 ALA B 83 UNP A0A4P1LXE LYS 85 CONFLICT SEQADV 7KD4 ALA B 359 UNP A0A4P1LXE GLU 361 CONFLICT SEQADV 7KD4 ALA B 362 UNP A0A4P1LXE LYS 364 CONFLICT SEQADV 7KD4 ALA B 363 UNP A0A4P1LXE ASP 365 CONFLICT SEQADV 7KD4 SER B 1352 UNP Q91MK1 CYS 352 ENGINEERED MUTATION SEQRES 1 A 431 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 431 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 431 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 431 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 431 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 431 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 431 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 431 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 431 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 431 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 431 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 431 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 431 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 431 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 431 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 431 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 431 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 431 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 431 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 431 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 431 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 431 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 431 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 431 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 431 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 431 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 431 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 431 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 431 ALA GLN THR ASN ALA ALA ALA LYS SER SER ALA ALA SER SEQRES 30 A 431 PRO ALA ALA LEU SER GLY TYR LYS MET THR LEU LEU ALA SEQRES 31 A 431 LEU ILE LYS GLU SER ILE PRO ASN GLN ALA LYS ARG GLN SEQRES 32 A 431 LYS PHE GLU MET GLN VAL GLY GLY ILE ARG ASN GLU GLN SEQRES 33 A 431 ASP PHE LYS ASN LEU ARG ARG GLU ILE ILE ARG SER ALA SEQRES 34 A 431 ALA GLN SEQRES 1 B 431 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 B 431 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 B 431 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 B 431 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 B 431 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 B 431 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 B 431 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 B 431 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 B 431 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 B 431 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 B 431 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 B 431 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 B 431 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 B 431 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 B 431 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 B 431 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 B 431 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 B 431 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 B 431 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 B 431 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 B 431 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 B 431 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 B 431 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 B 431 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 B 431 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 B 431 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 B 431 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 B 431 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 B 431 ALA GLN THR ASN ALA ALA ALA LYS SER SER ALA ALA SER SEQRES 30 B 431 PRO ALA ALA LEU SER GLY TYR LYS MET THR LEU LEU ALA SEQRES 31 B 431 LEU ILE LYS GLU SER ILE PRO ASN GLN ALA LYS ARG GLN SEQRES 32 B 431 LYS PHE GLU MET GLN VAL GLY GLY ILE ARG ASN GLU GLN SEQRES 33 B 431 ASP PHE LYS ASN LEU ARG ARG GLU ILE ILE ARG SER ALA SEQRES 34 B 431 ALA GLN HET GLC C 1 12 HET GLC C 2 11 HET GLC D 1 12 HET GLC D 2 11 HET SO4 A1401 5 HET SO4 A1402 5 HET SO4 A1403 5 HET SO4 A1404 5 HET SO4 A1405 5 HET SO4 A1406 5 HET SO4 A1407 5 HET SO4 A1408 5 HET SO4 A1409 5 HET SO4 B1401 5 HET SO4 B1402 5 HET SO4 B1403 5 HET SO4 B1404 5 HET SO4 B1405 5 HET SO4 B1406 5 HET SO4 B1407 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 SO4 16(O4 S 2-) FORMUL 21 HOH *1321(H2 O) HELIX 1 AA1 GLY A 16 GLY A 32 1 17 HELIX 2 AA2 LYS A 42 ALA A 52 1 11 HELIX 3 AA3 ARG A 66 SER A 73 1 8 HELIX 4 AA4 ALA A 82 ASP A 87 1 6 HELIX 5 AA5 TYR A 90 ASP A 95 1 6 HELIX 6 AA6 THR A 128 GLU A 130 5 3 HELIX 7 AA7 GLU A 131 LYS A 142 1 12 HELIX 8 AA8 GLU A 153 PHE A 156 5 4 HELIX 9 AA9 THR A 157 ASP A 164 1 8 HELIX 10 AB1 ASN A 185 ASN A 201 1 17 HELIX 11 AB2 ASP A 209 LYS A 219 1 11 HELIX 12 AB3 GLY A 228 TRP A 230 5 3 HELIX 13 AB4 ALA A 231 LYS A 239 1 9 HELIX 14 AB5 ASN A 272 TYR A 283 1 12 HELIX 15 AB6 THR A 286 LYS A 297 1 12 HELIX 16 AB7 LEU A 304 ALA A 312 1 9 HELIX 17 AB8 ASP A 314 GLY A 327 1 14 HELIX 18 AB9 GLN A 335 SER A 352 1 18 HELIX 19 AC1 THR A 356 ALA A 370 1 15 HELIX 20 AC2 SER A 1334 ILE A 1353 1 20 HELIX 21 AC3 ASN A 1355 ILE A 1369 1 15 HELIX 22 AC4 ASN A 1371 SER A 1385 1 15 HELIX 23 AC5 GLY B 16 GLY B 32 1 17 HELIX 24 AC6 LYS B 42 ALA B 52 1 11 HELIX 25 AC7 ARG B 66 SER B 73 1 8 HELIX 26 AC8 ALA B 82 ASP B 87 1 6 HELIX 27 AC9 TYR B 90 ASP B 95 1 6 HELIX 28 AD1 THR B 128 GLU B 130 5 3 HELIX 29 AD2 GLU B 131 LYS B 142 1 12 HELIX 30 AD3 GLU B 153 PHE B 156 5 4 HELIX 31 AD4 THR B 157 ASP B 164 1 8 HELIX 32 AD5 ASN B 185 ASN B 201 1 17 HELIX 33 AD6 ASP B 209 LYS B 219 1 11 HELIX 34 AD7 GLY B 228 TRP B 230 5 3 HELIX 35 AD8 ALA B 231 LYS B 239 1 9 HELIX 36 AD9 ASN B 272 TYR B 283 1 12 HELIX 37 AE1 THR B 286 LYS B 297 1 12 HELIX 38 AE2 LEU B 304 ALA B 312 1 9 HELIX 39 AE3 ASP B 314 GLY B 327 1 14 HELIX 40 AE4 GLN B 335 SER B 352 1 18 HELIX 41 AE5 THR B 356 ALA B 369 1 14 HELIX 42 AE6 SER B 1334 ILE B 1353 1 20 HELIX 43 AE7 ASN B 1355 ILE B 1369 1 15 HELIX 44 AE8 ASN B 1371 SER B 1385 1 15 SHEET 1 AA1 6 VAL A 35 GLU A 38 0 SHEET 2 AA1 6 LEU A 7 TRP A 10 1 N LEU A 7 O THR A 36 SHEET 3 AA1 6 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA1 6 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 AA1 6 TYR A 106 GLU A 111 -1 N GLU A 111 O GLY A 260 SHEET 6 AA1 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 AA2 5 VAL A 35 GLU A 38 0 SHEET 2 AA2 5 LEU A 7 TRP A 10 1 N LEU A 7 O THR A 36 SHEET 3 AA2 5 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA2 5 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 AA2 5 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 AA3 2 ARG A 98 TYR A 99 0 SHEET 2 AA3 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 AA4 4 SER A 145 LEU A 147 0 SHEET 2 AA4 4 THR A 222 ASN A 227 1 O ALA A 223 N SER A 145 SHEET 3 AA4 4 SER A 114 ASN A 118 -1 N ILE A 116 O THR A 225 SHEET 4 AA4 4 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 AA5 2 TYR A 167 GLU A 172 0 SHEET 2 AA5 2 LYS A 175 GLY A 182 -1 O ASP A 177 N LYS A 170 SHEET 1 AA6 6 VAL B 35 GLU B 38 0 SHEET 2 AA6 6 LEU B 7 TRP B 10 1 N ILE B 9 O GLU B 38 SHEET 3 AA6 6 ILE B 59 ALA B 63 1 O PHE B 61 N TRP B 10 SHEET 4 AA6 6 PHE B 258 ILE B 266 -1 O GLY B 265 N ILE B 60 SHEET 5 AA6 6 TYR B 106 GLU B 111 -1 N GLU B 111 O GLY B 260 SHEET 6 AA6 6 ALA B 301 VAL B 302 -1 O ALA B 301 N VAL B 110 SHEET 1 AA7 5 VAL B 35 GLU B 38 0 SHEET 2 AA7 5 LEU B 7 TRP B 10 1 N ILE B 9 O GLU B 38 SHEET 3 AA7 5 ILE B 59 ALA B 63 1 O PHE B 61 N TRP B 10 SHEET 4 AA7 5 PHE B 258 ILE B 266 -1 O GLY B 265 N ILE B 60 SHEET 5 AA7 5 GLU B 328 ILE B 329 1 O GLU B 328 N VAL B 259 SHEET 1 AA8 2 ARG B 98 TYR B 99 0 SHEET 2 AA8 2 LYS B 102 LEU B 103 -1 O LYS B 102 N TYR B 99 SHEET 1 AA9 4 SER B 145 LEU B 147 0 SHEET 2 AA9 4 THR B 222 ASN B 227 1 O ALA B 223 N SER B 145 SHEET 3 AA9 4 SER B 114 ASN B 118 -1 N ASN B 118 O ALA B 223 SHEET 4 AA9 4 TYR B 242 THR B 245 -1 O THR B 245 N LEU B 115 SHEET 1 AB1 2 TYR B 167 GLU B 172 0 SHEET 2 AB1 2 LYS B 175 GLY B 182 -1 O ASP B 177 N LYS B 170 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.40 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.43 CRYST1 57.561 70.074 111.739 90.00 96.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017373 0.000000 0.001971 0.00000 SCALE2 0.000000 0.014271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009007 0.00000