data_7KDR
#
_entry.id 7KDR
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.380
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7KDR pdb_00007kdr 10.2210/pdb7kdr/pdb
WWPDB D_1000252326 ? ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.details .
_pdbx_database_related.db_id 7KDO
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7KDR
_pdbx_database_status.recvd_initial_deposition_date 2020-10-09
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Shaw, G.X.' 1 ?
'Shi, G.' 2 ?
'Ji, X.' 3 0000-0001-6942-1514
#
loop_
_citation.abstract
_citation.abstract_id_CAS
_citation.book_id_ISBN
_citation.book_publisher
_citation.book_publisher_city
_citation.book_title
_citation.coordinate_linkage
_citation.country
_citation.database_id_Medline
_citation.details
_citation.id
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_full
_citation.journal_issue
_citation.journal_volume
_citation.language
_citation.page_first
_citation.page_last
_citation.title
_citation.year
_citation.database_id_CSD
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.unpublished_flag
? ? ? ? ? ? ? UK ? ? primary Bioorg.Med.Chem. BMECEP 1200 1464-3391 ? ? 29 ? 115847 115847
'Bisubstrate inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: Transition state analogs for high affinity binding.'
2021 ? 10.1016/j.bmc.2020.115847 33199204 ?
? ? ? ? ? ? ? US ? ? 1 'J. Med. Chem.' JMCMAR 0151 0022-2623 ? ? 44 ? 1364 1371
;Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: Synthesis and biochemical and crystallographic studies
;
2001 ? 10.1021/jm0004493 11311059 ?
? ? ? ? ? ? ? UK ? ? 2 'Bioorg. Med. Chem.' BMECEP 1200 0968-0896 ? ? 20 ? 47 57
'Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties' 2012
? 10.1016/j.bmc.2011.11.032 22169600 ?
? ? ? ? ? ? ? UK ? ? 3 'Bioorg. Med. Chem.' BMECEP 1200 0968-0896 ? ? 20 ? 4303 4309
'Bisubstrate analog inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New lead exhibits a distinct binding mode'
2012 ? 10.1016/j.bmc.2012.05.060 22727779 ?
? ? ? ? ? ? ? UK ? ? 4 'FEBS J.' ? ? 1742-464X ? ? 281 ? 4123 4134
;Structural enzymology and inhibition of the bi-functional folate pathway enzyme HPPK-DHPS from the biowarfare agent Francisella tularensis
;
2014 ? 10.1111/febs.12896 24975935 ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shi, G.' 1 ?
primary 'Shaw, G.X.' 2 ?
primary 'Zhu, F.' 3 ?
primary 'Tarasov, S.G.' 4 ?
primary 'Ji, X.' 5 ?
1 'Shi, G.' 6 ?
1 'Blaszczyk, J.' 7 ?
1 'Ji, X.' 8 0000-0001-6942-1514
1 'Yan, H.' 9 ?
2 'Shi, G.' 10 ?
2 'Shaw, G.' 11 ?
2 'Liang, Y.-H.' 12 ?
2 'Subburamann, P.' 13 ?
2 'Li, Y.' 14 ?
2 'Wu, Y.' 15 ?
2 'Yan, H.' 16 ?
2 'Ji, X.' 17 0000-0001-6942-1514
3 'Shi, G.' 18 ?
3 'Shaw, G.' 19 ?
3 'Li, Y.' 20 ?
3 'Wu, Y.' 21 ?
3 'Yan, H.' 22 ?
3 'Ji, X.' 23 0000-0001-6942-1514
4 'Shaw, G.X.' 24 ?
4 'Li, Y.' 25 ?
4 'Shi, G.' 26 ?
4 'Wu, Y.' 27 ?
4 'Cherry, S.' 28 ?
4 'Needle, D.' 29 ?
4 'Zhang, D.' 30 ?
4 'Tropea, J.E.' 31 ?
4 'Waugh, D.S.' 32 ?
4 'Yan, H.' 33 ?
4 'Ji, X.' 34 0000-0001-6942-1514
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 101.540
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 7KDR
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 61.446
_cell.length_a_esd ?
_cell.length_b 42.797
_cell.length_b_esd ?
_cell.length_c 56.283
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7KDR
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man '2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase' 17966.535 1 2.7.6.3 ? ? ?
2 non-polymer syn
;5'-{[(2R,4R)-1-{2-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridine-6-carbonyl)amino]ethyl}-2-carboxypiperidin-4-yl]sulfonyl}-5'-deoxyadenosine
;
704.715 1 ? ? ? ?
3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ?
4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ?
5 water nat water 18.015 268 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase,PPPK,7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase,HPPK'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_seq_one_letter_code_can
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 VAL n
1 3 ALA n
1 4 TYR n
1 5 ILE n
1 6 ALA n
1 7 ILE n
1 8 GLY n
1 9 SER n
1 10 ASN n
1 11 LEU n
1 12 ALA n
1 13 SER n
1 14 PRO n
1 15 LEU n
1 16 GLU n
1 17 GLN n
1 18 VAL n
1 19 ASN n
1 20 ALA n
1 21 ALA n
1 22 LEU n
1 23 LYS n
1 24 ALA n
1 25 LEU n
1 26 GLY n
1 27 ASP n
1 28 ILE n
1 29 PRO n
1 30 GLU n
1 31 SER n
1 32 HIS n
1 33 ILE n
1 34 LEU n
1 35 THR n
1 36 VAL n
1 37 SER n
1 38 SER n
1 39 PHE n
1 40 TYR n
1 41 ARG n
1 42 THR n
1 43 PRO n
1 44 PRO n
1 45 LEU n
1 46 GLY n
1 47 PRO n
1 48 GLN n
1 49 ASP n
1 50 GLN n
1 51 PRO n
1 52 ASP n
1 53 TYR n
1 54 LEU n
1 55 ASN n
1 56 ALA n
1 57 ALA n
1 58 VAL n
1 59 ALA n
1 60 LEU n
1 61 GLU n
1 62 THR n
1 63 SER n
1 64 LEU n
1 65 ALA n
1 66 PRO n
1 67 GLU n
1 68 GLU n
1 69 LEU n
1 70 LEU n
1 71 ASN n
1 72 HIS n
1 73 THR n
1 74 GLN n
1 75 ARG n
1 76 ILE n
1 77 GLU n
1 78 LEU n
1 79 GLN n
1 80 GLN n
1 81 GLY n
1 82 ARG n
1 83 VAL n
1 84 ARG n
1 85 LYS n
1 86 ALA n
1 87 GLU n
1 88 ARG n
1 89 TRP n
1 90 GLY n
1 91 PRO n
1 92 ARG n
1 93 THR n
1 94 LEU n
1 95 ASP n
1 96 LEU n
1 97 ASP n
1 98 ILE n
1 99 MET n
1 100 LEU n
1 101 PHE n
1 102 GLY n
1 103 ASN n
1 104 GLU n
1 105 VAL n
1 106 ILE n
1 107 ASN n
1 108 THR n
1 109 GLU n
1 110 ARG n
1 111 LEU n
1 112 THR n
1 113 VAL n
1 114 PRO n
1 115 HIS n
1 116 TYR n
1 117 ASP n
1 118 MET n
1 119 LYS n
1 120 ASN n
1 121 ARG n
1 122 GLY n
1 123 PHE n
1 124 MET n
1 125 LEU n
1 126 TRP n
1 127 PRO n
1 128 LEU n
1 129 PHE n
1 130 GLU n
1 131 ILE n
1 132 ALA n
1 133 PRO n
1 134 GLU n
1 135 LEU n
1 136 VAL n
1 137 PHE n
1 138 PRO n
1 139 ASP n
1 140 GLY n
1 141 GLU n
1 142 MET n
1 143 LEU n
1 144 ARG n
1 145 GLN n
1 146 ILE n
1 147 LEU n
1 148 HIS n
1 149 THR n
1 150 ARG n
1 151 ALA n
1 152 PHE n
1 153 ASP n
1 154 LYS n
1 155 LEU n
1 156 ASN n
1 157 LYS n
1 158 TRP n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type 'Biological sequence'
_entity_src_gen.pdbx_beg_seq_num 1
_entity_src_gen.pdbx_end_seq_num 158
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'folK, b0142, JW0138'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain K12
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli (strain K12)'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET17b
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code HPPK_ECOLI
_struct_ref.pdbx_db_accession P26281
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_struct_ref.pdbx_align_begin 2
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 7KDR
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 158
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P26281
_struct_ref_seq.db_align_beg 2
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 159
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 158
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453
EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
J1L non-polymer .
;5'-{[(2R,4R)-1-{2-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridine-6-carbonyl)amino]ethyl}-2-carboxypiperidin-4-yl]sulfonyl}-5'-deoxyadenosine
;
? 'C27 H36 N12 O9 S' 704.715
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7KDR
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.02
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 39.04
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity 1.498
_exptl_crystal.pdbx_mosaicity_esd 0.017
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 8.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 292
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details PEG-8000
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 16M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2020-02-20
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator Mirror
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.000
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 22-ID'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.000
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 22-ID
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 7KDR
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.480
_reflns.d_resolution_low 30.000
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 22571
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 94.600
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 5.400
_reflns.pdbx_Rmerge_I_obs 0.123
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 12.400
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.880
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.134
_reflns.pdbx_Rpim_I_all 0.053
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 122333
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
1.480 1.530 ? ? ? ? ? ? 1503 64.300 ? ? ? ? 0.325 ? ? ? ? ? ? ? ? 2.600 ? 0.848 ? ? 0.385 0.201 ? 1 1 0.875 ? ?
1.530 1.590 ? ? ? ? ? ? 2267 95.500 ? ? ? ? 0.320 ? ? ? ? ? ? ? ? 3.900 ? 0.863 ? ? 0.364 0.170 ? 2 1 0.900 ? ?
1.590 1.670 ? ? ? ? ? ? 2322 97.900 ? ? ? ? 0.302 ? ? ? ? ? ? ? ? 5.000 ? 0.939 ? ? 0.336 0.145 ? 3 1 0.927 ? ?
1.670 1.750 ? ? ? ? ? ? 2336 98.700 ? ? ? ? 0.264 ? ? ? ? ? ? ? ? 5.400 ? 0.911 ? ? 0.292 0.122 ? 4 1 0.946 ? ?
1.750 1.860 ? ? ? ? ? ? 2378 98.900 ? ? ? ? 0.235 ? ? ? ? ? ? ? ? 5.500 ? 0.984 ? ? 0.260 0.108 ? 5 1 0.956 ? ?
1.860 2.010 ? ? ? ? ? ? 2273 95.900 ? ? ? ? 0.201 ? ? ? ? ? ? ? ? 5.300 ? 0.702 ? ? 0.223 0.094 ? 6 1 0.961 ? ?
2.010 2.210 ? ? ? ? ? ? 2344 98.700 ? ? ? ? 0.179 ? ? ? ? ? ? ? ? 6.100 ? 0.789 ? ? 0.195 0.077 ? 7 1 0.975 ? ?
2.210 2.530 ? ? ? ? ? ? 2362 99.100 ? ? ? ? 0.164 ? ? ? ? ? ? ? ? 6.600 ? 0.919 ? ? 0.177 0.068 ? 8 1 0.976 ? ?
2.530 3.190 ? ? ? ? ? ? 2377 99.000 ? ? ? ? 0.127 ? ? ? ? ? ? ? ? 6.500 ? 0.922 ? ? 0.138 0.054 ? 9 1 0.987 ? ?
3.190 30.000 ? ? ? ? ? ? 2409 97.900 ? ? ? ? 0.095 ? ? ? ? ? ? ? ? 6.300 ? 0.876 ? ? 0.104 0.041 ? 10 1 0.986 ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 106.030
_refine.B_iso_mean 25.4774
_refine.B_iso_min 8.740
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7KDR
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.4880
_refine.ls_d_res_low 28.9710
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 22492
_refine.ls_number_reflns_R_free 1000
_refine.ls_number_reflns_R_work 21492
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 95.1200
_refine.ls_percent_reflns_R_free 4.4500
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1641
_refine.ls_R_factor_R_free 0.2006
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1624
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.380
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 7KDO
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 22.1300
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.1100
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 1.4880
_refine_hist.d_res_low 28.9710
_refine_hist.number_atoms_solvent 268
_refine_hist.number_atoms_total 1640
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 158
_refine_hist.pdbx_B_iso_mean_ligand 30.36
_refine_hist.pdbx_B_iso_mean_solvent 40.62
_refine_hist.pdbx_number_atoms_protein 1267
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 105
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 1.4882 1.5667 . . 118 2526 79.0000 . . . 0.2662 0.0000 0.2301 . . . . . . . . . . .
'X-RAY DIFFRACTION' 1.5667 1.6649 . . 144 3102 98.0000 . . . 0.2232 0.0000 0.2051 . . . . . . . . . . .
'X-RAY DIFFRACTION' 1.6649 1.7934 . . 149 3189 99.0000 . . . 0.2353 0.0000 0.1783 . . . . . . . . . . .
'X-RAY DIFFRACTION' 1.7934 1.9738 . . 144 3092 96.0000 . . . 0.2226 0.0000 0.1773 . . . . . . . . . . .
'X-RAY DIFFRACTION' 1.9738 2.2593 . . 145 3125 98.0000 . . . 0.2181 0.0000 0.1584 . . . . . . . . . . .
'X-RAY DIFFRACTION' 2.2593 2.8461 . . 150 3225 99.0000 . . . 0.1951 0.0000 0.1581 . . . . . . . . . . .
'X-RAY DIFFRACTION' 2.8461 28.9710 . . 150 3233 98.0000 . . . 0.1783 0.0000 0.1490 . . . . . . . . . . .
#
_struct.entry_id 7KDR
_struct.title 'Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-75'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7KDR
_struct_keywords.text 'alpha beta, TRANSFERASE, TRANSFERASE-INHIBITOR complex'
_struct_keywords.pdbx_keywords TRANSFERASE/INHIBITOR
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
F N N 5 ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 AA1 SER A 13 ? ASP A 27 ? SER A 13 ASP A 27 1 ? 15
HELX_P HELX_P2 AA2 ALA A 65 ? GLN A 80 ? ALA A 65 GLN A 80 1 ? 16
HELX_P HELX_P3 AA3 ASP A 117 ? ASN A 120 ? ASP A 117 ASN A 120 5 ? 4
HELX_P HELX_P4 AA4 ARG A 121 ? ALA A 132 ? ARG A 121 ALA A 132 1 ? 12
HELX_P HELX_P5 AA5 MET A 142 ? ALA A 151 ? MET A 142 ALA A 151 1 ? 10
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GLY 90 A . ? GLY 90 A PRO 91 A ? PRO 91 A 1 -1.03
2 VAL 113 A . ? VAL 113 A PRO 114 A ? PRO 114 A 1 -2.69
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 4 ?
AA2 ? 4 ?
AA3 ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA1 2 3 ? anti-parallel
AA1 3 4 ? anti-parallel
AA2 1 2 ? anti-parallel
AA2 2 3 ? anti-parallel
AA2 3 4 ? anti-parallel
AA3 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
AA1 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
AA1 3 VAL A 2 ? SER A 9 ? VAL A 2 SER A 9
AA1 4 ASP A 95 ? PHE A 101 ? ASP A 95 PHE A 101
AA2 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
AA2 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
AA2 3 TYR A 40 ? THR A 42 ? TYR A 40 THR A 42
AA2 4 ASN A 156 ? LYS A 157 ? ASN A 156 LYS A 157
AA3 1 ILE A 106 ? ASN A 107 ? ILE A 106 ASN A 107
AA3 2 THR A 112 ? VAL A 113 ? THR A 112 VAL A 113
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59
AA1 2 3 O LEU A 60 ? O LEU A 60 N ALA A 3 ? N ALA A 3
AA1 3 4 N GLY A 8 ? N GLY A 8 O ASP A 95 ? O ASP A 95
AA2 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59
AA2 2 3 O TYR A 53 ? O TYR A 53 N THR A 42 ? N THR A 42
AA2 3 4 N ARG A 41 ? N ARG A 41 O ASN A 156 ? O ASN A 156
AA3 1 2 N ILE A 106 ? N ILE A 106 O VAL A 113 ? O VAL A 113
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A J1L 201 ? 28 'binding site for residue J1L A 201'
AC2 Software A CL 202 ? 4 'binding site for residue CL A 202'
AC3 Software A EDO 203 ? 7 'binding site for residue EDO A 203'
AC4 Software A EDO 204 ? 6 'binding site for residue EDO A 204'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 28 THR A 42 ? THR A 42 . ? 1_555 ?
2 AC1 28 PRO A 43 ? PRO A 43 . ? 1_555 ?
3 AC1 28 LEU A 45 ? LEU A 45 . ? 1_555 ?
4 AC1 28 GLN A 48 ? GLN A 48 . ? 4_546 ?
5 AC1 28 TYR A 53 ? TYR A 53 . ? 1_555 ?
6 AC1 28 ASN A 55 ? ASN A 55 . ? 1_555 ?
7 AC1 28 GLN A 74 ? GLN A 74 . ? 1_555 ?
8 AC1 28 TRP A 89 ? TRP A 89 . ? 1_555 ?
9 AC1 28 ARG A 92 ? ARG A 92 . ? 1_555 ?
10 AC1 28 ASP A 95 ? ASP A 95 . ? 1_555 ?
11 AC1 28 ASP A 97 ? ASP A 97 . ? 1_555 ?
12 AC1 28 ILE A 98 ? ILE A 98 . ? 1_555 ?
13 AC1 28 ARG A 110 ? ARG A 110 . ? 1_555 ?
14 AC1 28 LEU A 111 ? LEU A 111 . ? 1_555 ?
15 AC1 28 THR A 112 ? THR A 112 . ? 1_555 ?
16 AC1 28 HIS A 115 ? HIS A 115 . ? 1_555 ?
17 AC1 28 TYR A 116 ? TYR A 116 . ? 1_555 ?
18 AC1 28 ARG A 121 ? ARG A 121 . ? 1_555 ?
19 AC1 28 PHE A 123 ? PHE A 123 . ? 1_555 ?
20 AC1 28 EDO D . ? EDO A 203 . ? 4_546 ?
21 AC1 28 EDO E . ? EDO A 204 . ? 1_555 ?
22 AC1 28 HOH F . ? HOH A 327 . ? 1_555 ?
23 AC1 28 HOH F . ? HOH A 335 . ? 1_555 ?
24 AC1 28 HOH F . ? HOH A 360 . ? 1_555 ?
25 AC1 28 HOH F . ? HOH A 368 . ? 1_555 ?
26 AC1 28 HOH F . ? HOH A 388 . ? 1_555 ?
27 AC1 28 HOH F . ? HOH A 423 . ? 1_555 ?
28 AC1 28 HOH F . ? HOH A 440 . ? 3_545 ?
29 AC2 4 LYS A 119 ? LYS A 119 . ? 1_555 ?
30 AC2 4 PRO A 138 ? PRO A 138 . ? 1_555 ?
31 AC2 4 ASP A 139 ? ASP A 139 . ? 1_555 ?
32 AC2 4 HOH F . ? HOH A 529 . ? 1_555 ?
33 AC3 7 GLN A 48 ? GLN A 48 . ? 1_555 ?
34 AC3 7 ARG A 88 ? ARG A 88 . ? 4_556 ?
35 AC3 7 TYR A 116 ? TYR A 116 . ? 4_556 ?
36 AC3 7 J1L B . ? J1L A 201 . ? 4_556 ?
37 AC3 7 HOH F . ? HOH A 305 . ? 1_555 ?
38 AC3 7 HOH F . ? HOH A 313 . ? 1_555 ?
39 AC3 7 HOH F . ? HOH A 348 . ? 1_555 ?
40 AC4 6 ALA A 6 ? ALA A 6 . ? 1_555 ?
41 AC4 6 ASN A 55 ? ASN A 55 . ? 1_555 ?
42 AC4 6 ASP A 95 ? ASP A 95 . ? 1_555 ?
43 AC4 6 ASP A 97 ? ASP A 97 . ? 1_555 ?
44 AC4 6 J1L B . ? J1L A 201 . ? 1_555 ?
45 AC4 6 HOH F . ? HOH A 337 . ? 1_555 ?
#
_atom_sites.entry_id 7KDR
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.016274
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.003323
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023366
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018134
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
CL
H
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR THR A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 ALA 3 3 3 ALA ALA A . n
A 1 4 TYR 4 4 4 TYR TYR A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 ILE 7 7 7 ILE ILE A . n
A 1 8 GLY 8 8 8 GLY GLY A . n
A 1 9 SER 9 9 9 SER SER A . n
A 1 10 ASN 10 10 10 ASN ASN A . n
A 1 11 LEU 11 11 11 LEU LEU A . n
A 1 12 ALA 12 12 12 ALA ALA A . n
A 1 13 SER 13 13 13 SER SER A . n
A 1 14 PRO 14 14 14 PRO PRO A . n
A 1 15 LEU 15 15 15 LEU LEU A . n
A 1 16 GLU 16 16 16 GLU GLU A . n
A 1 17 GLN 17 17 17 GLN GLN A . n
A 1 18 VAL 18 18 18 VAL VAL A . n
A 1 19 ASN 19 19 19 ASN ASN A . n
A 1 20 ALA 20 20 20 ALA ALA A . n
A 1 21 ALA 21 21 21 ALA ALA A . n
A 1 22 LEU 22 22 22 LEU LEU A . n
A 1 23 LYS 23 23 23 LYS LYS A . n
A 1 24 ALA 24 24 24 ALA ALA A . n
A 1 25 LEU 25 25 25 LEU LEU A . n
A 1 26 GLY 26 26 26 GLY GLY A . n
A 1 27 ASP 27 27 27 ASP ASP A . n
A 1 28 ILE 28 28 28 ILE ILE A . n
A 1 29 PRO 29 29 29 PRO PRO A . n
A 1 30 GLU 30 30 30 GLU GLU A . n
A 1 31 SER 31 31 31 SER SER A . n
A 1 32 HIS 32 32 32 HIS HIS A . n
A 1 33 ILE 33 33 33 ILE ILE A . n
A 1 34 LEU 34 34 34 LEU LEU A . n
A 1 35 THR 35 35 35 THR THR A . n
A 1 36 VAL 36 36 36 VAL VAL A . n
A 1 37 SER 37 37 37 SER SER A . n
A 1 38 SER 38 38 38 SER SER A . n
A 1 39 PHE 39 39 39 PHE PHE A . n
A 1 40 TYR 40 40 40 TYR TYR A . n
A 1 41 ARG 41 41 41 ARG ARG A . n
A 1 42 THR 42 42 42 THR THR A . n
A 1 43 PRO 43 43 43 PRO PRO A . n
A 1 44 PRO 44 44 44 PRO PRO A . n
A 1 45 LEU 45 45 45 LEU LEU A . n
A 1 46 GLY 46 46 46 GLY GLY A . n
A 1 47 PRO 47 47 47 PRO PRO A . n
A 1 48 GLN 48 48 48 GLN GLN A . n
A 1 49 ASP 49 49 49 ASP ASP A . n
A 1 50 GLN 50 50 50 GLN GLN A . n
A 1 51 PRO 51 51 51 PRO PRO A . n
A 1 52 ASP 52 52 52 ASP ASP A . n
A 1 53 TYR 53 53 53 TYR TYR A . n
A 1 54 LEU 54 54 54 LEU LEU A . n
A 1 55 ASN 55 55 55 ASN ASN A . n
A 1 56 ALA 56 56 56 ALA ALA A . n
A 1 57 ALA 57 57 57 ALA ALA A . n
A 1 58 VAL 58 58 58 VAL VAL A . n
A 1 59 ALA 59 59 59 ALA ALA A . n
A 1 60 LEU 60 60 60 LEU LEU A . n
A 1 61 GLU 61 61 61 GLU GLU A . n
A 1 62 THR 62 62 62 THR THR A . n
A 1 63 SER 63 63 63 SER SER A . n
A 1 64 LEU 64 64 64 LEU LEU A . n
A 1 65 ALA 65 65 65 ALA ALA A . n
A 1 66 PRO 66 66 66 PRO PRO A . n
A 1 67 GLU 67 67 67 GLU GLU A . n
A 1 68 GLU 68 68 68 GLU GLU A . n
A 1 69 LEU 69 69 69 LEU LEU A . n
A 1 70 LEU 70 70 70 LEU LEU A . n
A 1 71 ASN 71 71 71 ASN ASN A . n
A 1 72 HIS 72 72 72 HIS HIS A . n
A 1 73 THR 73 73 73 THR THR A . n
A 1 74 GLN 74 74 74 GLN GLN A . n
A 1 75 ARG 75 75 75 ARG ARG A . n
A 1 76 ILE 76 76 76 ILE ILE A . n
A 1 77 GLU 77 77 77 GLU GLU A . n
A 1 78 LEU 78 78 78 LEU LEU A . n
A 1 79 GLN 79 79 79 GLN GLN A . n
A 1 80 GLN 80 80 80 GLN GLN A . n
A 1 81 GLY 81 81 81 GLY GLY A . n
A 1 82 ARG 82 82 82 ARG ARG A . n
A 1 83 VAL 83 83 83 VAL VAL A . n
A 1 84 ARG 84 84 84 ARG ARG A . n
A 1 85 LYS 85 85 85 LYS LYS A . n
A 1 86 ALA 86 86 86 ALA ALA A . n
A 1 87 GLU 87 87 87 GLU GLU A . n
A 1 88 ARG 88 88 88 ARG ARG A . n
A 1 89 TRP 89 89 89 TRP TRP A . n
A 1 90 GLY 90 90 90 GLY GLY A . n
A 1 91 PRO 91 91 91 PRO PRO A . n
A 1 92 ARG 92 92 92 ARG ARG A . n
A 1 93 THR 93 93 93 THR THR A . n
A 1 94 LEU 94 94 94 LEU LEU A . n
A 1 95 ASP 95 95 95 ASP ASP A . n
A 1 96 LEU 96 96 96 LEU LEU A . n
A 1 97 ASP 97 97 97 ASP ASP A . n
A 1 98 ILE 98 98 98 ILE ILE A . n
A 1 99 MET 99 99 99 MET MET A . n
A 1 100 LEU 100 100 100 LEU LEU A . n
A 1 101 PHE 101 101 101 PHE PHE A . n
A 1 102 GLY 102 102 102 GLY GLY A . n
A 1 103 ASN 103 103 103 ASN ASN A . n
A 1 104 GLU 104 104 104 GLU GLU A . n
A 1 105 VAL 105 105 105 VAL VAL A . n
A 1 106 ILE 106 106 106 ILE ILE A . n
A 1 107 ASN 107 107 107 ASN ASN A . n
A 1 108 THR 108 108 108 THR THR A . n
A 1 109 GLU 109 109 109 GLU GLU A . n
A 1 110 ARG 110 110 110 ARG ARG A . n
A 1 111 LEU 111 111 111 LEU LEU A . n
A 1 112 THR 112 112 112 THR THR A . n
A 1 113 VAL 113 113 113 VAL VAL A . n
A 1 114 PRO 114 114 114 PRO PRO A . n
A 1 115 HIS 115 115 115 HIS HIS A . n
A 1 116 TYR 116 116 116 TYR TYR A . n
A 1 117 ASP 117 117 117 ASP ASP A . n
A 1 118 MET 118 118 118 MET MET A . n
A 1 119 LYS 119 119 119 LYS LYS A . n
A 1 120 ASN 120 120 120 ASN ASN A . n
A 1 121 ARG 121 121 121 ARG ARG A . n
A 1 122 GLY 122 122 122 GLY GLY A . n
A 1 123 PHE 123 123 123 PHE PHE A . n
A 1 124 MET 124 124 124 MET MET A . n
A 1 125 LEU 125 125 125 LEU LEU A . n
A 1 126 TRP 126 126 126 TRP TRP A . n
A 1 127 PRO 127 127 127 PRO PRO A . n
A 1 128 LEU 128 128 128 LEU LEU A . n
A 1 129 PHE 129 129 129 PHE PHE A . n
A 1 130 GLU 130 130 130 GLU GLU A . n
A 1 131 ILE 131 131 131 ILE ILE A . n
A 1 132 ALA 132 132 132 ALA ALA A . n
A 1 133 PRO 133 133 133 PRO PRO A . n
A 1 134 GLU 134 134 134 GLU GLU A . n
A 1 135 LEU 135 135 135 LEU LEU A . n
A 1 136 VAL 136 136 136 VAL VAL A . n
A 1 137 PHE 137 137 137 PHE PHE A . n
A 1 138 PRO 138 138 138 PRO PRO A . n
A 1 139 ASP 139 139 139 ASP ASP A . n
A 1 140 GLY 140 140 140 GLY GLY A . n
A 1 141 GLU 141 141 141 GLU GLU A . n
A 1 142 MET 142 142 142 MET MET A . n
A 1 143 LEU 143 143 143 LEU LEU A . n
A 1 144 ARG 144 144 144 ARG ARG A . n
A 1 145 GLN 145 145 145 GLN GLN A . n
A 1 146 ILE 146 146 146 ILE ILE A . n
A 1 147 LEU 147 147 147 LEU LEU A . n
A 1 148 HIS 148 148 148 HIS HIS A . n
A 1 149 THR 149 149 149 THR THR A . n
A 1 150 ARG 150 150 150 ARG ARG A . n
A 1 151 ALA 151 151 151 ALA ALA A . n
A 1 152 PHE 152 152 152 PHE PHE A . n
A 1 153 ASP 153 153 153 ASP ASP A . n
A 1 154 LYS 154 154 154 LYS LYS A . n
A 1 155 LEU 155 155 155 LEU LEU A . n
A 1 156 ASN 156 156 156 ASN ASN A . n
A 1 157 LYS 157 157 157 LYS LYS A . n
A 1 158 TRP 158 158 158 TRP TRP A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 J1L 1 201 171 J1L J1L A .
C 3 CL 1 202 201 CL CL A .
D 4 EDO 1 203 301 EDO EDO A .
E 4 EDO 1 204 302 EDO EDO A .
F 5 HOH 1 301 128 HOH HOH A .
F 5 HOH 2 302 261 HOH HOH A .
F 5 HOH 3 303 214 HOH HOH A .
F 5 HOH 4 304 260 HOH HOH A .
F 5 HOH 5 305 126 HOH HOH A .
F 5 HOH 6 306 25 HOH HOH A .
F 5 HOH 7 307 117 HOH HOH A .
F 5 HOH 8 308 72 HOH HOH A .
F 5 HOH 9 309 184 HOH HOH A .
F 5 HOH 10 310 42 HOH HOH A .
F 5 HOH 11 311 189 HOH HOH A .
F 5 HOH 12 312 227 HOH HOH A .
F 5 HOH 13 313 188 HOH HOH A .
F 5 HOH 14 314 16 HOH HOH A .
F 5 HOH 15 315 183 HOH HOH A .
F 5 HOH 16 316 169 HOH HOH A .
F 5 HOH 17 317 266 HOH HOH A .
F 5 HOH 18 318 180 HOH HOH A .
F 5 HOH 19 319 232 HOH HOH A .
F 5 HOH 20 320 15 HOH HOH A .
F 5 HOH 21 321 60 HOH HOH A .
F 5 HOH 22 322 106 HOH HOH A .
F 5 HOH 23 323 140 HOH HOH A .
F 5 HOH 24 324 145 HOH HOH A .
F 5 HOH 25 325 138 HOH HOH A .
F 5 HOH 26 326 30 HOH HOH A .
F 5 HOH 27 327 115 HOH HOH A .
F 5 HOH 28 328 192 HOH HOH A .
F 5 HOH 29 329 63 HOH HOH A .
F 5 HOH 30 330 94 HOH HOH A .
F 5 HOH 31 331 208 HOH HOH A .
F 5 HOH 32 332 164 HOH HOH A .
F 5 HOH 33 333 134 HOH HOH A .
F 5 HOH 34 334 108 HOH HOH A .
F 5 HOH 35 335 173 HOH HOH A .
F 5 HOH 36 336 141 HOH HOH A .
F 5 HOH 37 337 27 HOH HOH A .
F 5 HOH 38 338 62 HOH HOH A .
F 5 HOH 39 339 230 HOH HOH A .
F 5 HOH 40 340 118 HOH HOH A .
F 5 HOH 41 341 137 HOH HOH A .
F 5 HOH 42 342 47 HOH HOH A .
F 5 HOH 43 343 34 HOH HOH A .
F 5 HOH 44 344 3 HOH HOH A .
F 5 HOH 45 345 19 HOH HOH A .
F 5 HOH 46 346 194 HOH HOH A .
F 5 HOH 47 347 143 HOH HOH A .
F 5 HOH 48 348 185 HOH HOH A .
F 5 HOH 49 349 84 HOH HOH A .
F 5 HOH 50 350 9 HOH HOH A .
F 5 HOH 51 351 238 HOH HOH A .
F 5 HOH 52 352 59 HOH HOH A .
F 5 HOH 53 353 112 HOH HOH A .
F 5 HOH 54 354 13 HOH HOH A .
F 5 HOH 55 355 33 HOH HOH A .
F 5 HOH 56 356 177 HOH HOH A .
F 5 HOH 57 357 37 HOH HOH A .
F 5 HOH 58 358 101 HOH HOH A .
F 5 HOH 59 359 222 HOH HOH A .
F 5 HOH 60 360 18 HOH HOH A .
F 5 HOH 61 361 11 HOH HOH A .
F 5 HOH 62 362 149 HOH HOH A .
F 5 HOH 63 363 197 HOH HOH A .
F 5 HOH 64 364 68 HOH HOH A .
F 5 HOH 65 365 56 HOH HOH A .
F 5 HOH 66 366 205 HOH HOH A .
F 5 HOH 67 367 158 HOH HOH A .
F 5 HOH 68 368 178 HOH HOH A .
F 5 HOH 69 369 17 HOH HOH A .
F 5 HOH 70 370 77 HOH HOH A .
F 5 HOH 71 371 1 HOH HOH A .
F 5 HOH 72 372 61 HOH HOH A .
F 5 HOH 73 373 124 HOH HOH A .
F 5 HOH 74 374 144 HOH HOH A .
F 5 HOH 75 375 218 HOH HOH A .
F 5 HOH 76 376 240 HOH HOH A .
F 5 HOH 77 377 148 HOH HOH A .
F 5 HOH 78 378 133 HOH HOH A .
F 5 HOH 79 379 69 HOH HOH A .
F 5 HOH 80 380 31 HOH HOH A .
F 5 HOH 81 381 21 HOH HOH A .
F 5 HOH 82 382 73 HOH HOH A .
F 5 HOH 83 383 195 HOH HOH A .
F 5 HOH 84 384 10 HOH HOH A .
F 5 HOH 85 385 136 HOH HOH A .
F 5 HOH 86 386 212 HOH HOH A .
F 5 HOH 87 387 221 HOH HOH A .
F 5 HOH 88 388 12 HOH HOH A .
F 5 HOH 89 389 182 HOH HOH A .
F 5 HOH 90 390 130 HOH HOH A .
F 5 HOH 91 391 139 HOH HOH A .
F 5 HOH 92 392 36 HOH HOH A .
F 5 HOH 93 393 75 HOH HOH A .
F 5 HOH 94 394 4 HOH HOH A .
F 5 HOH 95 395 41 HOH HOH A .
F 5 HOH 96 396 216 HOH HOH A .
F 5 HOH 97 397 154 HOH HOH A .
F 5 HOH 98 398 153 HOH HOH A .
F 5 HOH 99 399 206 HOH HOH A .
F 5 HOH 100 400 39 HOH HOH A .
F 5 HOH 101 401 217 HOH HOH A .
F 5 HOH 102 402 54 HOH HOH A .
F 5 HOH 103 403 241 HOH HOH A .
F 5 HOH 104 404 198 HOH HOH A .
F 5 HOH 105 405 167 HOH HOH A .
F 5 HOH 106 406 155 HOH HOH A .
F 5 HOH 107 407 103 HOH HOH A .
F 5 HOH 108 408 46 HOH HOH A .
F 5 HOH 109 409 85 HOH HOH A .
F 5 HOH 110 410 239 HOH HOH A .
F 5 HOH 111 411 225 HOH HOH A .
F 5 HOH 112 412 98 HOH HOH A .
F 5 HOH 113 413 160 HOH HOH A .
F 5 HOH 114 414 91 HOH HOH A .
F 5 HOH 115 415 162 HOH HOH A .
F 5 HOH 116 416 142 HOH HOH A .
F 5 HOH 117 417 49 HOH HOH A .
F 5 HOH 118 418 67 HOH HOH A .
F 5 HOH 119 419 53 HOH HOH A .
F 5 HOH 120 420 119 HOH HOH A .
F 5 HOH 121 421 23 HOH HOH A .
F 5 HOH 122 422 82 HOH HOH A .
F 5 HOH 123 423 50 HOH HOH A .
F 5 HOH 124 424 168 HOH HOH A .
F 5 HOH 125 425 71 HOH HOH A .
F 5 HOH 126 426 190 HOH HOH A .
F 5 HOH 127 427 48 HOH HOH A .
F 5 HOH 128 428 78 HOH HOH A .
F 5 HOH 129 429 211 HOH HOH A .
F 5 HOH 130 430 7 HOH HOH A .
F 5 HOH 131 431 129 HOH HOH A .
F 5 HOH 132 432 170 HOH HOH A .
F 5 HOH 133 433 127 HOH HOH A .
F 5 HOH 134 434 2 HOH HOH A .
F 5 HOH 135 435 14 HOH HOH A .
F 5 HOH 136 436 196 HOH HOH A .
F 5 HOH 137 437 209 HOH HOH A .
F 5 HOH 138 438 201 HOH HOH A .
F 5 HOH 139 439 228 HOH HOH A .
F 5 HOH 140 440 89 HOH HOH A .
F 5 HOH 141 441 38 HOH HOH A .
F 5 HOH 142 442 132 HOH HOH A .
F 5 HOH 143 443 64 HOH HOH A .
F 5 HOH 144 444 107 HOH HOH A .
F 5 HOH 145 445 220 HOH HOH A .
F 5 HOH 146 446 44 HOH HOH A .
F 5 HOH 147 447 86 HOH HOH A .
F 5 HOH 148 448 102 HOH HOH A .
F 5 HOH 149 449 95 HOH HOH A .
F 5 HOH 150 450 152 HOH HOH A .
F 5 HOH 151 451 55 HOH HOH A .
F 5 HOH 152 452 109 HOH HOH A .
F 5 HOH 153 453 122 HOH HOH A .
F 5 HOH 154 454 215 HOH HOH A .
F 5 HOH 155 455 254 HOH HOH A .
F 5 HOH 156 456 6 HOH HOH A .
F 5 HOH 157 457 125 HOH HOH A .
F 5 HOH 158 458 35 HOH HOH A .
F 5 HOH 159 459 229 HOH HOH A .
F 5 HOH 160 460 22 HOH HOH A .
F 5 HOH 161 461 248 HOH HOH A .
F 5 HOH 162 462 26 HOH HOH A .
F 5 HOH 163 463 150 HOH HOH A .
F 5 HOH 164 464 193 HOH HOH A .
F 5 HOH 165 465 104 HOH HOH A .
F 5 HOH 166 466 51 HOH HOH A .
F 5 HOH 167 467 253 HOH HOH A .
F 5 HOH 168 468 116 HOH HOH A .
F 5 HOH 169 469 66 HOH HOH A .
F 5 HOH 170 470 74 HOH HOH A .
F 5 HOH 171 471 256 HOH HOH A .
F 5 HOH 172 472 203 HOH HOH A .
F 5 HOH 173 473 245 HOH HOH A .
F 5 HOH 174 474 237 HOH HOH A .
F 5 HOH 175 475 28 HOH HOH A .
F 5 HOH 176 476 249 HOH HOH A .
F 5 HOH 177 477 79 HOH HOH A .
F 5 HOH 178 478 247 HOH HOH A .
F 5 HOH 179 479 146 HOH HOH A .
F 5 HOH 180 480 8 HOH HOH A .
F 5 HOH 181 481 45 HOH HOH A .
F 5 HOH 182 482 242 HOH HOH A .
F 5 HOH 183 483 165 HOH HOH A .
F 5 HOH 184 484 111 HOH HOH A .
F 5 HOH 185 485 207 HOH HOH A .
F 5 HOH 186 486 90 HOH HOH A .
F 5 HOH 187 487 88 HOH HOH A .
F 5 HOH 188 488 135 HOH HOH A .
F 5 HOH 189 489 5 HOH HOH A .
F 5 HOH 190 490 100 HOH HOH A .
F 5 HOH 191 491 172 HOH HOH A .
F 5 HOH 192 492 24 HOH HOH A .
F 5 HOH 193 493 234 HOH HOH A .
F 5 HOH 194 494 250 HOH HOH A .
F 5 HOH 195 495 175 HOH HOH A .
F 5 HOH 196 496 219 HOH HOH A .
F 5 HOH 197 497 246 HOH HOH A .
F 5 HOH 198 498 224 HOH HOH A .
F 5 HOH 199 499 81 HOH HOH A .
F 5 HOH 200 500 110 HOH HOH A .
F 5 HOH 201 501 236 HOH HOH A .
F 5 HOH 202 502 156 HOH HOH A .
F 5 HOH 203 503 262 HOH HOH A .
F 5 HOH 204 504 123 HOH HOH A .
F 5 HOH 205 505 265 HOH HOH A .
F 5 HOH 206 506 186 HOH HOH A .
F 5 HOH 207 507 235 HOH HOH A .
F 5 HOH 208 508 157 HOH HOH A .
F 5 HOH 209 509 199 HOH HOH A .
F 5 HOH 210 510 43 HOH HOH A .
F 5 HOH 211 511 269 HOH HOH A .
F 5 HOH 212 512 57 HOH HOH A .
F 5 HOH 213 513 191 HOH HOH A .
F 5 HOH 214 514 174 HOH HOH A .
F 5 HOH 215 515 96 HOH HOH A .
F 5 HOH 216 516 105 HOH HOH A .
F 5 HOH 217 517 213 HOH HOH A .
F 5 HOH 218 518 163 HOH HOH A .
F 5 HOH 219 519 120 HOH HOH A .
F 5 HOH 220 520 147 HOH HOH A .
F 5 HOH 221 521 226 HOH HOH A .
F 5 HOH 222 522 181 HOH HOH A .
F 5 HOH 223 523 268 HOH HOH A .
F 5 HOH 224 524 264 HOH HOH A .
F 5 HOH 225 525 93 HOH HOH A .
F 5 HOH 226 526 263 HOH HOH A .
F 5 HOH 227 527 58 HOH HOH A .
F 5 HOH 228 528 161 HOH HOH A .
F 5 HOH 229 529 76 HOH HOH A .
F 5 HOH 230 530 114 HOH HOH A .
F 5 HOH 231 531 166 HOH HOH A .
F 5 HOH 232 532 87 HOH HOH A .
F 5 HOH 233 533 99 HOH HOH A .
F 5 HOH 234 534 29 HOH HOH A .
F 5 HOH 235 535 259 HOH HOH A .
F 5 HOH 236 536 252 HOH HOH A .
F 5 HOH 237 537 80 HOH HOH A .
F 5 HOH 238 538 233 HOH HOH A .
F 5 HOH 239 539 52 HOH HOH A .
F 5 HOH 240 540 271 HOH HOH A .
F 5 HOH 241 541 113 HOH HOH A .
F 5 HOH 242 542 151 HOH HOH A .
F 5 HOH 243 543 70 HOH HOH A .
F 5 HOH 244 544 92 HOH HOH A .
F 5 HOH 245 545 231 HOH HOH A .
F 5 HOH 246 546 267 HOH HOH A .
F 5 HOH 247 547 179 HOH HOH A .
F 5 HOH 248 548 65 HOH HOH A .
F 5 HOH 249 549 200 HOH HOH A .
F 5 HOH 250 550 251 HOH HOH A .
F 5 HOH 251 551 187 HOH HOH A .
F 5 HOH 252 552 32 HOH HOH A .
F 5 HOH 253 553 257 HOH HOH A .
F 5 HOH 254 554 202 HOH HOH A .
F 5 HOH 255 555 258 HOH HOH A .
F 5 HOH 256 556 223 HOH HOH A .
F 5 HOH 257 557 270 HOH HOH A .
F 5 HOH 258 558 244 HOH HOH A .
F 5 HOH 259 559 243 HOH HOH A .
F 5 HOH 260 560 204 HOH HOH A .
F 5 HOH 261 561 210 HOH HOH A .
F 5 HOH 262 562 255 HOH HOH A .
F 5 HOH 263 563 159 HOH HOH A .
F 5 HOH 264 564 20 HOH HOH A .
F 5 HOH 265 565 83 HOH HOH A .
F 5 HOH 266 566 97 HOH HOH A .
F 5 HOH 267 567 171 HOH HOH A .
F 5 HOH 268 568 121 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 303 ? F HOH .
2 1 A HOH 454 ? F HOH .
3 1 A HOH 557 ? F HOH .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2020-12-02
2 'Structure model' 1 1 2021-02-03
3 'Structure model' 1 2 2023-10-18
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' database_2
5 3 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.journal_volume'
2 2 'Structure model' '_citation.year'
3 3 'Structure model' '_database_2.pdbx_DOI'
4 3 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 1
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16 3
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4
? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5
#
_pdbx_entry_details.entry_id 7KDR
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 SER A 13 ? ? 71.92 83.20
2 1 ASP A 49 ? B -92.53 55.45
#
loop_
_pdbx_distant_solvent_atoms.id
_pdbx_distant_solvent_atoms.PDB_model_num
_pdbx_distant_solvent_atoms.auth_atom_id
_pdbx_distant_solvent_atoms.label_alt_id
_pdbx_distant_solvent_atoms.auth_asym_id
_pdbx_distant_solvent_atoms.auth_comp_id
_pdbx_distant_solvent_atoms.auth_seq_id
_pdbx_distant_solvent_atoms.PDB_ins_code
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance
_pdbx_distant_solvent_atoms.neighbor_ligand_distance
1 1 O ? A HOH 567 ? 6.08 .
2 1 O ? A HOH 568 ? 6.37 .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CL CL CL N N 74
EDO C1 C N N 75
EDO O1 O N N 76
EDO C2 C N N 77
EDO O2 O N N 78
EDO H11 H N N 79
EDO H12 H N N 80
EDO HO1 H N N 81
EDO H21 H N N 82
EDO H22 H N N 83
EDO HO2 H N N 84
GLN N N N N 85
GLN CA C N S 86
GLN C C N N 87
GLN O O N N 88
GLN CB C N N 89
GLN CG C N N 90
GLN CD C N N 91
GLN OE1 O N N 92
GLN NE2 N N N 93
GLN OXT O N N 94
GLN H H N N 95
GLN H2 H N N 96
GLN HA H N N 97
GLN HB2 H N N 98
GLN HB3 H N N 99
GLN HG2 H N N 100
GLN HG3 H N N 101
GLN HE21 H N N 102
GLN HE22 H N N 103
GLN HXT H N N 104
GLU N N N N 105
GLU CA C N S 106
GLU C C N N 107
GLU O O N N 108
GLU CB C N N 109
GLU CG C N N 110
GLU CD C N N 111
GLU OE1 O N N 112
GLU OE2 O N N 113
GLU OXT O N N 114
GLU H H N N 115
GLU H2 H N N 116
GLU HA H N N 117
GLU HB2 H N N 118
GLU HB3 H N N 119
GLU HG2 H N N 120
GLU HG3 H N N 121
GLU HE2 H N N 122
GLU HXT H N N 123
GLY N N N N 124
GLY CA C N N 125
GLY C C N N 126
GLY O O N N 127
GLY OXT O N N 128
GLY H H N N 129
GLY H2 H N N 130
GLY HA2 H N N 131
GLY HA3 H N N 132
GLY HXT H N N 133
HIS N N N N 134
HIS CA C N S 135
HIS C C N N 136
HIS O O N N 137
HIS CB C N N 138
HIS CG C Y N 139
HIS ND1 N Y N 140
HIS CD2 C Y N 141
HIS CE1 C Y N 142
HIS NE2 N Y N 143
HIS OXT O N N 144
HIS H H N N 145
HIS H2 H N N 146
HIS HA H N N 147
HIS HB2 H N N 148
HIS HB3 H N N 149
HIS HD1 H N N 150
HIS HD2 H N N 151
HIS HE1 H N N 152
HIS HE2 H N N 153
HIS HXT H N N 154
HOH O O N N 155
HOH H1 H N N 156
HOH H2 H N N 157
ILE N N N N 158
ILE CA C N S 159
ILE C C N N 160
ILE O O N N 161
ILE CB C N S 162
ILE CG1 C N N 163
ILE CG2 C N N 164
ILE CD1 C N N 165
ILE OXT O N N 166
ILE H H N N 167
ILE H2 H N N 168
ILE HA H N N 169
ILE HB H N N 170
ILE HG12 H N N 171
ILE HG13 H N N 172
ILE HG21 H N N 173
ILE HG22 H N N 174
ILE HG23 H N N 175
ILE HD11 H N N 176
ILE HD12 H N N 177
ILE HD13 H N N 178
ILE HXT H N N 179
J1L C01 C N N 180
J1L C1 C N S 181
J1L C10 C N N 182
J1L C11 C N R 183
J1L C12 C N N 184
J1L C13 C N R 185
J1L C14 C N N 186
J1L C15 C N N 187
J1L C16 C N N 188
J1L C18 C N N 189
J1L C19 C N N 190
J1L C2 C N S 191
J1L C20 C N N 192
J1L C21 C N N 193
J1L C22 C N N 194
J1L C23 C N N 195
J1L C24 C N N 196
J1L C25 C N N 197
J1L C26 C N N 198
J1L C27 C N N 199
J1L C3 C N R 200
J1L C4 C N R 201
J1L C5 C Y N 202
J1L C6 C Y N 203
J1L C7 C Y N 204
J1L C8 C Y N 205
J1L C9 C Y N 206
J1L N1 N Y N 207
J1L N10 N N N 208
J1L N11 N N N 209
J1L N12 N N N 210
J1L N2 N Y N 211
J1L N28 N N N 212
J1L N3 N N N 213
J1L N4 N Y N 214
J1L N5 N Y N 215
J1L N6 N N N 216
J1L N8 N N N 217
J1L N9 N N N 218
J1L O01 O N N 219
J1L O02 O N N 220
J1L O03 O N N 221
J1L O04 O N N 222
J1L O1 O N N 223
J1L O2 O N N 224
J1L O3 O N N 225
J1L O4 O N N 226
J1L O5 O N N 227
J1L S1 S N N 228
J1L H1 H N N 229
J1L H10 H N N 230
J1L H10A H N N 231
J1L H11 H N N 232
J1L H12A H N N 233
J1L H12 H N N 234
J1L H02 H N N 235
J1L H14 H N N 236
J1L H14A H N N 237
J1L H15A H N N 238
J1L H15 H N N 239
J1L H16A H N N 240
J1L H16 H N N 241
J1L H2 H N N 242
J1L H23B H N N 243
J1L H23A H N N 244
J1L H23 H N N 245
J1L H24B H N N 246
J1L H24 H N N 247
J1L H24A H N N 248
J1L H27 H N N 249
J1L H27A H N N 250
J1L H3 H N N 251
J1L H4 H N N 252
J1L H5 H N N 253
J1L H8 H N N 254
J1L HN10 H N N 255
J1L HN12 H N N 256
J1L HN28 H N N 257
J1L HN3 H N N 258
J1L HN3A H N N 259
J1L HN9 H N N 260
J1L HN9A H N N 261
J1L H7 H N N 262
J1L HO2 H N N 263
J1L HO3 H N N 264
LEU N N N N 265
LEU CA C N S 266
LEU C C N N 267
LEU O O N N 268
LEU CB C N N 269
LEU CG C N N 270
LEU CD1 C N N 271
LEU CD2 C N N 272
LEU OXT O N N 273
LEU H H N N 274
LEU H2 H N N 275
LEU HA H N N 276
LEU HB2 H N N 277
LEU HB3 H N N 278
LEU HG H N N 279
LEU HD11 H N N 280
LEU HD12 H N N 281
LEU HD13 H N N 282
LEU HD21 H N N 283
LEU HD22 H N N 284
LEU HD23 H N N 285
LEU HXT H N N 286
LYS N N N N 287
LYS CA C N S 288
LYS C C N N 289
LYS O O N N 290
LYS CB C N N 291
LYS CG C N N 292
LYS CD C N N 293
LYS CE C N N 294
LYS NZ N N N 295
LYS OXT O N N 296
LYS H H N N 297
LYS H2 H N N 298
LYS HA H N N 299
LYS HB2 H N N 300
LYS HB3 H N N 301
LYS HG2 H N N 302
LYS HG3 H N N 303
LYS HD2 H N N 304
LYS HD3 H N N 305
LYS HE2 H N N 306
LYS HE3 H N N 307
LYS HZ1 H N N 308
LYS HZ2 H N N 309
LYS HZ3 H N N 310
LYS HXT H N N 311
MET N N N N 312
MET CA C N S 313
MET C C N N 314
MET O O N N 315
MET CB C N N 316
MET CG C N N 317
MET SD S N N 318
MET CE C N N 319
MET OXT O N N 320
MET H H N N 321
MET H2 H N N 322
MET HA H N N 323
MET HB2 H N N 324
MET HB3 H N N 325
MET HG2 H N N 326
MET HG3 H N N 327
MET HE1 H N N 328
MET HE2 H N N 329
MET HE3 H N N 330
MET HXT H N N 331
PHE N N N N 332
PHE CA C N S 333
PHE C C N N 334
PHE O O N N 335
PHE CB C N N 336
PHE CG C Y N 337
PHE CD1 C Y N 338
PHE CD2 C Y N 339
PHE CE1 C Y N 340
PHE CE2 C Y N 341
PHE CZ C Y N 342
PHE OXT O N N 343
PHE H H N N 344
PHE H2 H N N 345
PHE HA H N N 346
PHE HB2 H N N 347
PHE HB3 H N N 348
PHE HD1 H N N 349
PHE HD2 H N N 350
PHE HE1 H N N 351
PHE HE2 H N N 352
PHE HZ H N N 353
PHE HXT H N N 354
PRO N N N N 355
PRO CA C N S 356
PRO C C N N 357
PRO O O N N 358
PRO CB C N N 359
PRO CG C N N 360
PRO CD C N N 361
PRO OXT O N N 362
PRO H H N N 363
PRO HA H N N 364
PRO HB2 H N N 365
PRO HB3 H N N 366
PRO HG2 H N N 367
PRO HG3 H N N 368
PRO HD2 H N N 369
PRO HD3 H N N 370
PRO HXT H N N 371
SER N N N N 372
SER CA C N S 373
SER C C N N 374
SER O O N N 375
SER CB C N N 376
SER OG O N N 377
SER OXT O N N 378
SER H H N N 379
SER H2 H N N 380
SER HA H N N 381
SER HB2 H N N 382
SER HB3 H N N 383
SER HG H N N 384
SER HXT H N N 385
THR N N N N 386
THR CA C N S 387
THR C C N N 388
THR O O N N 389
THR CB C N R 390
THR OG1 O N N 391
THR CG2 C N N 392
THR OXT O N N 393
THR H H N N 394
THR H2 H N N 395
THR HA H N N 396
THR HB H N N 397
THR HG1 H N N 398
THR HG21 H N N 399
THR HG22 H N N 400
THR HG23 H N N 401
THR HXT H N N 402
TRP N N N N 403
TRP CA C N S 404
TRP C C N N 405
TRP O O N N 406
TRP CB C N N 407
TRP CG C Y N 408
TRP CD1 C Y N 409
TRP CD2 C Y N 410
TRP NE1 N Y N 411
TRP CE2 C Y N 412
TRP CE3 C Y N 413
TRP CZ2 C Y N 414
TRP CZ3 C Y N 415
TRP CH2 C Y N 416
TRP OXT O N N 417
TRP H H N N 418
TRP H2 H N N 419
TRP HA H N N 420
TRP HB2 H N N 421
TRP HB3 H N N 422
TRP HD1 H N N 423
TRP HE1 H N N 424
TRP HE3 H N N 425
TRP HZ2 H N N 426
TRP HZ3 H N N 427
TRP HH2 H N N 428
TRP HXT H N N 429
TYR N N N N 430
TYR CA C N S 431
TYR C C N N 432
TYR O O N N 433
TYR CB C N N 434
TYR CG C Y N 435
TYR CD1 C Y N 436
TYR CD2 C Y N 437
TYR CE1 C Y N 438
TYR CE2 C Y N 439
TYR CZ C Y N 440
TYR OH O N N 441
TYR OXT O N N 442
TYR H H N N 443
TYR H2 H N N 444
TYR HA H N N 445
TYR HB2 H N N 446
TYR HB3 H N N 447
TYR HD1 H N N 448
TYR HD2 H N N 449
TYR HE1 H N N 450
TYR HE2 H N N 451
TYR HH H N N 452
TYR HXT H N N 453
VAL N N N N 454
VAL CA C N S 455
VAL C C N N 456
VAL O O N N 457
VAL CB C N N 458
VAL CG1 C N N 459
VAL CG2 C N N 460
VAL OXT O N N 461
VAL H H N N 462
VAL H2 H N N 463
VAL HA H N N 464
VAL HB H N N 465
VAL HG11 H N N 466
VAL HG12 H N N 467
VAL HG13 H N N 468
VAL HG21 H N N 469
VAL HG22 H N N 470
VAL HG23 H N N 471
VAL HXT H N N 472
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
EDO C1 O1 sing N N 70
EDO C1 C2 sing N N 71
EDO C1 H11 sing N N 72
EDO C1 H12 sing N N 73
EDO O1 HO1 sing N N 74
EDO C2 O2 sing N N 75
EDO C2 H21 sing N N 76
EDO C2 H22 sing N N 77
EDO O2 HO2 sing N N 78
GLN N CA sing N N 79
GLN N H sing N N 80
GLN N H2 sing N N 81
GLN CA C sing N N 82
GLN CA CB sing N N 83
GLN CA HA sing N N 84
GLN C O doub N N 85
GLN C OXT sing N N 86
GLN CB CG sing N N 87
GLN CB HB2 sing N N 88
GLN CB HB3 sing N N 89
GLN CG CD sing N N 90
GLN CG HG2 sing N N 91
GLN CG HG3 sing N N 92
GLN CD OE1 doub N N 93
GLN CD NE2 sing N N 94
GLN NE2 HE21 sing N N 95
GLN NE2 HE22 sing N N 96
GLN OXT HXT sing N N 97
GLU N CA sing N N 98
GLU N H sing N N 99
GLU N H2 sing N N 100
GLU CA C sing N N 101
GLU CA CB sing N N 102
GLU CA HA sing N N 103
GLU C O doub N N 104
GLU C OXT sing N N 105
GLU CB CG sing N N 106
GLU CB HB2 sing N N 107
GLU CB HB3 sing N N 108
GLU CG CD sing N N 109
GLU CG HG2 sing N N 110
GLU CG HG3 sing N N 111
GLU CD OE1 doub N N 112
GLU CD OE2 sing N N 113
GLU OE2 HE2 sing N N 114
GLU OXT HXT sing N N 115
GLY N CA sing N N 116
GLY N H sing N N 117
GLY N H2 sing N N 118
GLY CA C sing N N 119
GLY CA HA2 sing N N 120
GLY CA HA3 sing N N 121
GLY C O doub N N 122
GLY C OXT sing N N 123
GLY OXT HXT sing N N 124
HIS N CA sing N N 125
HIS N H sing N N 126
HIS N H2 sing N N 127
HIS CA C sing N N 128
HIS CA CB sing N N 129
HIS CA HA sing N N 130
HIS C O doub N N 131
HIS C OXT sing N N 132
HIS CB CG sing N N 133
HIS CB HB2 sing N N 134
HIS CB HB3 sing N N 135
HIS CG ND1 sing Y N 136
HIS CG CD2 doub Y N 137
HIS ND1 CE1 doub Y N 138
HIS ND1 HD1 sing N N 139
HIS CD2 NE2 sing Y N 140
HIS CD2 HD2 sing N N 141
HIS CE1 NE2 sing Y N 142
HIS CE1 HE1 sing N N 143
HIS NE2 HE2 sing N N 144
HIS OXT HXT sing N N 145
HOH O H1 sing N N 146
HOH O H2 sing N N 147
ILE N CA sing N N 148
ILE N H sing N N 149
ILE N H2 sing N N 150
ILE CA C sing N N 151
ILE CA CB sing N N 152
ILE CA HA sing N N 153
ILE C O doub N N 154
ILE C OXT sing N N 155
ILE CB CG1 sing N N 156
ILE CB CG2 sing N N 157
ILE CB HB sing N N 158
ILE CG1 CD1 sing N N 159
ILE CG1 HG12 sing N N 160
ILE CG1 HG13 sing N N 161
ILE CG2 HG21 sing N N 162
ILE CG2 HG22 sing N N 163
ILE CG2 HG23 sing N N 164
ILE CD1 HD11 sing N N 165
ILE CD1 HD12 sing N N 166
ILE CD1 HD13 sing N N 167
ILE OXT HXT sing N N 168
J1L N4 C8 sing Y N 169
J1L N4 C7 doub Y N 170
J1L C8 N5 doub Y N 171
J1L N3 C7 sing N N 172
J1L C7 C6 sing Y N 173
J1L N5 C9 sing Y N 174
J1L C6 C9 doub Y N 175
J1L C6 N2 sing Y N 176
J1L C9 N1 sing Y N 177
J1L N2 C5 doub Y N 178
J1L O3 C3 sing N N 179
J1L C3 C4 sing N N 180
J1L C3 C2 sing N N 181
J1L N1 C5 sing Y N 182
J1L N1 C4 sing N N 183
J1L O5 C20 doub N N 184
J1L C4 O1 sing N N 185
J1L C15 C14 sing N N 186
J1L C15 C11 sing N N 187
J1L C2 O2 sing N N 188
J1L C2 C1 sing N N 189
J1L C14 N6 sing N N 190
J1L C20 N10 sing N N 191
J1L C20 C26 sing N N 192
J1L N10 C19 sing N N 193
J1L O1 C1 sing N N 194
J1L C10 C1 sing N N 195
J1L C10 S1 sing N N 196
J1L N6 C16 sing N N 197
J1L N6 C13 sing N N 198
J1L C11 S1 sing N N 199
J1L C11 C12 sing N N 200
J1L C16 C27 sing N N 201
J1L C27 N28 sing N N 202
J1L N28 C18 sing N N 203
J1L N9 C19 sing N N 204
J1L C19 N8 doub N N 205
J1L C26 N11 sing N N 206
J1L C26 C25 doub N N 207
J1L N11 C21 doub N N 208
J1L S1 O02 doub N N 209
J1L S1 O04 doub N N 210
J1L C12 C13 sing N N 211
J1L C13 C01 sing N N 212
J1L O01 C01 doub N N 213
J1L C18 C21 sing N N 214
J1L C18 O4 doub N N 215
J1L C25 N8 sing N N 216
J1L C25 N12 sing N N 217
J1L C21 C22 sing N N 218
J1L C01 O03 sing N N 219
J1L N12 C22 sing N N 220
J1L C22 C23 sing N N 221
J1L C22 C24 sing N N 222
J1L C1 H1 sing N N 223
J1L C10 H10 sing N N 224
J1L C10 H10A sing N N 225
J1L C11 H11 sing N N 226
J1L C12 H12A sing N N 227
J1L C12 H12 sing N N 228
J1L C13 H02 sing N N 229
J1L C14 H14 sing N N 230
J1L C14 H14A sing N N 231
J1L C15 H15A sing N N 232
J1L C15 H15 sing N N 233
J1L C16 H16A sing N N 234
J1L C16 H16 sing N N 235
J1L C2 H2 sing N N 236
J1L C23 H23B sing N N 237
J1L C23 H23A sing N N 238
J1L C23 H23 sing N N 239
J1L C24 H24B sing N N 240
J1L C24 H24 sing N N 241
J1L C24 H24A sing N N 242
J1L C27 H27 sing N N 243
J1L C27 H27A sing N N 244
J1L C3 H3 sing N N 245
J1L C4 H4 sing N N 246
J1L C5 H5 sing N N 247
J1L C8 H8 sing N N 248
J1L N10 HN10 sing N N 249
J1L N12 HN12 sing N N 250
J1L N28 HN28 sing N N 251
J1L N3 HN3 sing N N 252
J1L N3 HN3A sing N N 253
J1L N9 HN9 sing N N 254
J1L N9 HN9A sing N N 255
J1L O03 H7 sing N N 256
J1L O2 HO2 sing N N 257
J1L O3 HO3 sing N N 258
LEU N CA sing N N 259
LEU N H sing N N 260
LEU N H2 sing N N 261
LEU CA C sing N N 262
LEU CA CB sing N N 263
LEU CA HA sing N N 264
LEU C O doub N N 265
LEU C OXT sing N N 266
LEU CB CG sing N N 267
LEU CB HB2 sing N N 268
LEU CB HB3 sing N N 269
LEU CG CD1 sing N N 270
LEU CG CD2 sing N N 271
LEU CG HG sing N N 272
LEU CD1 HD11 sing N N 273
LEU CD1 HD12 sing N N 274
LEU CD1 HD13 sing N N 275
LEU CD2 HD21 sing N N 276
LEU CD2 HD22 sing N N 277
LEU CD2 HD23 sing N N 278
LEU OXT HXT sing N N 279
LYS N CA sing N N 280
LYS N H sing N N 281
LYS N H2 sing N N 282
LYS CA C sing N N 283
LYS CA CB sing N N 284
LYS CA HA sing N N 285
LYS C O doub N N 286
LYS C OXT sing N N 287
LYS CB CG sing N N 288
LYS CB HB2 sing N N 289
LYS CB HB3 sing N N 290
LYS CG CD sing N N 291
LYS CG HG2 sing N N 292
LYS CG HG3 sing N N 293
LYS CD CE sing N N 294
LYS CD HD2 sing N N 295
LYS CD HD3 sing N N 296
LYS CE NZ sing N N 297
LYS CE HE2 sing N N 298
LYS CE HE3 sing N N 299
LYS NZ HZ1 sing N N 300
LYS NZ HZ2 sing N N 301
LYS NZ HZ3 sing N N 302
LYS OXT HXT sing N N 303
MET N CA sing N N 304
MET N H sing N N 305
MET N H2 sing N N 306
MET CA C sing N N 307
MET CA CB sing N N 308
MET CA HA sing N N 309
MET C O doub N N 310
MET C OXT sing N N 311
MET CB CG sing N N 312
MET CB HB2 sing N N 313
MET CB HB3 sing N N 314
MET CG SD sing N N 315
MET CG HG2 sing N N 316
MET CG HG3 sing N N 317
MET SD CE sing N N 318
MET CE HE1 sing N N 319
MET CE HE2 sing N N 320
MET CE HE3 sing N N 321
MET OXT HXT sing N N 322
PHE N CA sing N N 323
PHE N H sing N N 324
PHE N H2 sing N N 325
PHE CA C sing N N 326
PHE CA CB sing N N 327
PHE CA HA sing N N 328
PHE C O doub N N 329
PHE C OXT sing N N 330
PHE CB CG sing N N 331
PHE CB HB2 sing N N 332
PHE CB HB3 sing N N 333
PHE CG CD1 doub Y N 334
PHE CG CD2 sing Y N 335
PHE CD1 CE1 sing Y N 336
PHE CD1 HD1 sing N N 337
PHE CD2 CE2 doub Y N 338
PHE CD2 HD2 sing N N 339
PHE CE1 CZ doub Y N 340
PHE CE1 HE1 sing N N 341
PHE CE2 CZ sing Y N 342
PHE CE2 HE2 sing N N 343
PHE CZ HZ sing N N 344
PHE OXT HXT sing N N 345
PRO N CA sing N N 346
PRO N CD sing N N 347
PRO N H sing N N 348
PRO CA C sing N N 349
PRO CA CB sing N N 350
PRO CA HA sing N N 351
PRO C O doub N N 352
PRO C OXT sing N N 353
PRO CB CG sing N N 354
PRO CB HB2 sing N N 355
PRO CB HB3 sing N N 356
PRO CG CD sing N N 357
PRO CG HG2 sing N N 358
PRO CG HG3 sing N N 359
PRO CD HD2 sing N N 360
PRO CD HD3 sing N N 361
PRO OXT HXT sing N N 362
SER N CA sing N N 363
SER N H sing N N 364
SER N H2 sing N N 365
SER CA C sing N N 366
SER CA CB sing N N 367
SER CA HA sing N N 368
SER C O doub N N 369
SER C OXT sing N N 370
SER CB OG sing N N 371
SER CB HB2 sing N N 372
SER CB HB3 sing N N 373
SER OG HG sing N N 374
SER OXT HXT sing N N 375
THR N CA sing N N 376
THR N H sing N N 377
THR N H2 sing N N 378
THR CA C sing N N 379
THR CA CB sing N N 380
THR CA HA sing N N 381
THR C O doub N N 382
THR C OXT sing N N 383
THR CB OG1 sing N N 384
THR CB CG2 sing N N 385
THR CB HB sing N N 386
THR OG1 HG1 sing N N 387
THR CG2 HG21 sing N N 388
THR CG2 HG22 sing N N 389
THR CG2 HG23 sing N N 390
THR OXT HXT sing N N 391
TRP N CA sing N N 392
TRP N H sing N N 393
TRP N H2 sing N N 394
TRP CA C sing N N 395
TRP CA CB sing N N 396
TRP CA HA sing N N 397
TRP C O doub N N 398
TRP C OXT sing N N 399
TRP CB CG sing N N 400
TRP CB HB2 sing N N 401
TRP CB HB3 sing N N 402
TRP CG CD1 doub Y N 403
TRP CG CD2 sing Y N 404
TRP CD1 NE1 sing Y N 405
TRP CD1 HD1 sing N N 406
TRP CD2 CE2 doub Y N 407
TRP CD2 CE3 sing Y N 408
TRP NE1 CE2 sing Y N 409
TRP NE1 HE1 sing N N 410
TRP CE2 CZ2 sing Y N 411
TRP CE3 CZ3 doub Y N 412
TRP CE3 HE3 sing N N 413
TRP CZ2 CH2 doub Y N 414
TRP CZ2 HZ2 sing N N 415
TRP CZ3 CH2 sing Y N 416
TRP CZ3 HZ3 sing N N 417
TRP CH2 HH2 sing N N 418
TRP OXT HXT sing N N 419
TYR N CA sing N N 420
TYR N H sing N N 421
TYR N H2 sing N N 422
TYR CA C sing N N 423
TYR CA CB sing N N 424
TYR CA HA sing N N 425
TYR C O doub N N 426
TYR C OXT sing N N 427
TYR CB CG sing N N 428
TYR CB HB2 sing N N 429
TYR CB HB3 sing N N 430
TYR CG CD1 doub Y N 431
TYR CG CD2 sing Y N 432
TYR CD1 CE1 sing Y N 433
TYR CD1 HD1 sing N N 434
TYR CD2 CE2 doub Y N 435
TYR CD2 HD2 sing N N 436
TYR CE1 CZ doub Y N 437
TYR CE1 HE1 sing N N 438
TYR CE2 CZ sing Y N 439
TYR CE2 HE2 sing N N 440
TYR CZ OH sing N N 441
TYR OH HH sing N N 442
TYR OXT HXT sing N N 443
VAL N CA sing N N 444
VAL N H sing N N 445
VAL N H2 sing N N 446
VAL CA C sing N N 447
VAL CA CB sing N N 448
VAL CA HA sing N N 449
VAL C O doub N N 450
VAL C OXT sing N N 451
VAL CB CG1 sing N N 452
VAL CB CG2 sing N N 453
VAL CB HB sing N N 454
VAL CG1 HG11 sing N N 455
VAL CG1 HG12 sing N N 456
VAL CG1 HG13 sing N N 457
VAL CG2 HG21 sing N N 458
VAL CG2 HG22 sing N N 459
VAL CG2 HG23 sing N N 460
VAL OXT HXT sing N N 461
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id J1L
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id J1L
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2
;5'-{[(2R,4R)-1-{2-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridine-6-carbonyl)amino]ethyl}-2-carboxypiperidin-4-yl]sulfonyl}-5'-deoxyadenosine
;
J1L
3 'CHLORIDE ION' CL
4 1,2-ETHANEDIOL EDO
5 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 7KDO
_pdbx_initial_refinement_model.details ?
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#