data_7KII # _entry.id 7KII # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7KII pdb_00007kii 10.2210/pdb7kii/pdb WWPDB D_1000252532 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7KII _pdbx_database_status.recvd_initial_deposition_date 2020-10-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tompkins, K.J.' 1 0000-0003-0427-2671 'Gordon, W.R.' 2 0000-0001-7696-5560 'Shi, K.' 3 0000-0003-4175-3714 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'to be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Tompkins, K.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7KII _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.417 _cell.length_a_esd ? _cell.length_b 66.343 _cell.length_b_esd ? _cell.length_c 71.259 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KII _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP-dependent helicase Rep' 12385.729 1 ? Y91F ? ? 2 polymer syn ;DNA (5'-D(*TP*AP*TP*TP*AP*TP*TP*AP*CP*C)-3') ; 2993.990 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 188 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RepP,Replication-associated protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAKSGNYSYKRWVFTINNPTFEDYVHVLEFCTLDNCKFAIVGEEKGANGTPHLQGFLNLRSNARAAALEESLGGRAWLSR ARGSDEDNEEFCAKESTYLRVGEPVSKGRSS ; ;MAKSGNYSYKRWVFTINNPTFEDYVHVLEFCTLDNCKFAIVGEEKGANGTPHLQGFLNLRSNARAAALEESLGGRAWLSR ARGSDEDNEEFCAKESTYLRVGEPVSKGRSS ; A ? 2 polydeoxyribonucleotide no no '(DT)(DA)(DT)(DT)(DA)(DT)(DT)(DA)(DC)(DC)' TATTATTACC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 SER n 1 5 GLY n 1 6 ASN n 1 7 TYR n 1 8 SER n 1 9 TYR n 1 10 LYS n 1 11 ARG n 1 12 TRP n 1 13 VAL n 1 14 PHE n 1 15 THR n 1 16 ILE n 1 17 ASN n 1 18 ASN n 1 19 PRO n 1 20 THR n 1 21 PHE n 1 22 GLU n 1 23 ASP n 1 24 TYR n 1 25 VAL n 1 26 HIS n 1 27 VAL n 1 28 LEU n 1 29 GLU n 1 30 PHE n 1 31 CYS n 1 32 THR n 1 33 LEU n 1 34 ASP n 1 35 ASN n 1 36 CYS n 1 37 LYS n 1 38 PHE n 1 39 ALA n 1 40 ILE n 1 41 VAL n 1 42 GLY n 1 43 GLU n 1 44 GLU n 1 45 LYS n 1 46 GLY n 1 47 ALA n 1 48 ASN n 1 49 GLY n 1 50 THR n 1 51 PRO n 1 52 HIS n 1 53 LEU n 1 54 GLN n 1 55 GLY n 1 56 PHE n 1 57 LEU n 1 58 ASN n 1 59 LEU n 1 60 ARG n 1 61 SER n 1 62 ASN n 1 63 ALA n 1 64 ARG n 1 65 ALA n 1 66 ALA n 1 67 ALA n 1 68 LEU n 1 69 GLU n 1 70 GLU n 1 71 SER n 1 72 LEU n 1 73 GLY n 1 74 GLY n 1 75 ARG n 1 76 ALA n 1 77 TRP n 1 78 LEU n 1 79 SER n 1 80 ARG n 1 81 ALA n 1 82 ARG n 1 83 GLY n 1 84 SER n 1 85 ASP n 1 86 GLU n 1 87 ASP n 1 88 ASN n 1 89 GLU n 1 90 GLU n 1 91 PHE n 1 92 CYS n 1 93 ALA n 1 94 LYS n 1 95 GLU n 1 96 SER n 1 97 THR n 1 98 TYR n 1 99 LEU n 1 100 ARG n 1 101 VAL n 1 102 GLY n 1 103 GLU n 1 104 PRO n 1 105 VAL n 1 106 SER n 1 107 LYS n 1 108 GLY n 1 109 ARG n 1 110 SER n 1 111 SER n 2 1 DT n 2 2 DA n 2 3 DT n 2 4 DT n 2 5 DA n 2 6 DT n 2 7 DT n 2 8 DA n 2 9 DC n 2 10 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 111 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Muscovy duck circovirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 257468 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Muscovy duck circovirus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 257468 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP D2JZX8_9CIRC D2JZX8 ? 1 ;MAKSGNYSYKRWVFTINNPTFEDYVHVLEFCTLDNCKFAIVGEEKGANGTPHLQGFLNLRSNARAAALEESLGGRAWLSR ARGSDEDNEEYCAKESTYLRVGEPVSKGRSS ; 1 2 PDB 7KII 7KII ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7KII A 1 ? 111 ? D2JZX8 1 ? 111 ? 1 111 2 2 7KII C 1 ? 10 ? 7KII 299 ? 308 ? 299 308 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 7KII _struct_ref_seq_dif.mon_id PHE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 91 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code D2JZX8 _struct_ref_seq_dif.db_mon_id TYR _struct_ref_seq_dif.pdbx_seq_db_seq_num 91 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 91 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7KII _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.23 _exptl_crystal.description 'orthorhombic, 200 x 200 x 100 microns' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, pH 4.8, 20 mM Calcium chloride, 26% 2-methyl-2,4-pentanediol, 30% polyethylene glycol 200 added to drop' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-09-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97910 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97910 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 14.46 _reflns.entry_id 7KII _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.300 _reflns.d_resolution_low 48.56 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 32195 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.42 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.6 _reflns.pdbx_Rmerge_I_obs 0.05301 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.24 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.05902 _reflns.pdbx_Rpim_I_all 0.0254 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.300 _reflns_shell.d_res_low 1.346 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.18 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3197 _reflns_shell.percent_possible_all 99.35 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.3681 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.4191 _reflns_shell.pdbx_Rpim_I_all 0.1961 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.943 _reflns_shell.pdbx_CC_star 0.985 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 88.220 _refine.B_iso_mean 23.1329 _refine.B_iso_min 10.850 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7KII _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.3000 _refine.ls_d_res_low 48.5600 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 32141 _refine.ls_number_reflns_R_free 1649 _refine.ls_number_reflns_R_work 30625 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.0100 _refine.ls_percent_reflns_R_free 5.1100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1510 _refine.ls_R_factor_R_free 0.1843 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1492 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.390 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6WDZ _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.6700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.3000 _refine_hist.d_res_low 48.5600 _refine_hist.number_atoms_solvent 188 _refine_hist.number_atoms_total 1200 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 113 _refine_hist.pdbx_B_iso_mean_ligand 65.81 _refine_hist.pdbx_B_iso_mean_solvent 35.05 _refine_hist.pdbx_number_atoms_protein 806 _refine_hist.pdbx_number_atoms_nucleic_acid 198 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.3000 1.3300 2563 . 138 2425 94.0000 . . . 0.3368 0.0000 0.2907 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.3300 1.3800 2679 . 129 2550 99.0000 . . . 0.2645 0.0000 0.2335 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.3800 1.4300 2674 . 133 2541 99.0000 . . . 0.2653 0.0000 0.1980 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.4300 1.4800 2659 . 128 2531 98.0000 . . . 0.2185 0.0000 0.1679 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.4800 1.5500 2716 . 134 2582 100.0000 . . . 0.1642 0.0000 0.1391 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.5500 1.6300 2698 . 144 2554 99.0000 . . . 0.1760 0.0000 0.1268 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.6300 1.7400 2717 . 120 2597 99.0000 . . . 0.1553 0.0000 0.1311 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.7400 1.8700 2711 . 144 2567 99.0000 . . . 0.1746 0.0000 0.1374 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.8700 2.0600 2666 . 130 2536 97.0000 . . . 0.1731 0.0000 0.1416 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.0600 2.3600 2720 . 132 2588 99.0000 . . . 0.1861 0.0000 0.1476 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.3600 2.9700 2713 . 164 2549 98.0000 . . . 0.1751 0.0000 0.1591 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.9700 48.5600 2758 . 153 2605 95.0000 . . . 0.1774 0.0000 0.1359 . . . . . . . 12 . . . # _struct.entry_id 7KII _struct.title 'Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7KII _struct_keywords.text ;HUH-tag, HUH motif, Rep domain, viral protein, single stranded DNA, ssDNA, ssDNA binding, REPLICATION, DNA BINDING PROTEIN, REPLICATION-DNA complex ; _struct_keywords.pdbx_keywords REPLICATION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 20 ? CYS A 31 ? THR A 20 CYS A 31 1 ? 12 HELX_P HELX_P2 AA2 ALA A 65 ? LEU A 72 ? ALA A 65 LEU A 72 1 ? 8 HELX_P HELX_P3 AA3 SER A 84 ? LYS A 94 ? SER A 84 LYS A 94 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 44 OE1 ? ? ? 1_555 C MN . MN ? ? A GLU 44 A MN 201 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc2 metalc ? ? A HIS 52 NE2 ? ? ? 1_555 C MN . MN ? ? A HIS 52 A MN 201 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc3 metalc ? ? A GLN 54 OE1 ? ? ? 1_555 C MN . MN ? ? A GLN 54 A MN 201 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc4 metalc ? ? C MN . MN ? ? ? 1_555 G HOH . O ? ? A MN 201 A HOH 372 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc5 metalc ? ? C MN . MN ? ? ? 1_555 B DT 7 "O3'" ? ? A MN 201 C DT 305 1_555 ? ? ? ? ? ? ? 2.472 ? ? metalc6 metalc ? ? C MN . MN ? ? ? 1_555 B DA 8 OP1 ? ? A MN 201 C DA 306 1_555 ? ? ? ? ? ? ? 2.257 ? ? metalc7 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 202 A HOH 425 1_555 ? ? ? ? ? ? ? 3.166 ? ? metalc8 metalc ? ? E CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 203 A HOH 343 1_555 ? ? ? ? ? ? ? 3.047 ? ? metalc9 metalc ? ? E CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 203 A HOH 343 4_555 ? ? ? ? ? ? ? 3.047 ? ? hydrog1 hydrog ? ? B DT 4 N3 ? ? ? 1_555 B DA 8 N1 ? ? C DT 302 C DA 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 4 O4 ? ? ? 1_555 B DA 8 N6 ? ? C DT 302 C DA 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DA 5 N3 ? ? ? 1_555 B DT 7 N3 ? ? C DA 303 C DT 305 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog4 hydrog ? ? B DA 5 N3 ? ? ? 1_555 B DA 8 N6 ? ? C DA 303 C DA 306 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 77 ? ARG A 80 ? TRP A 77 ARG A 80 AA1 2 SER A 8 ? ASN A 17 ? SER A 8 ASN A 17 AA1 3 PRO A 51 ? ARG A 64 ? PRO A 51 ARG A 64 AA1 4 CYS A 36 ? LYS A 45 ? CYS A 36 LYS A 45 AA1 5 TYR A 98 ? GLY A 102 ? TYR A 98 GLY A 102 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TRP A 77 ? O TRP A 77 N THR A 15 ? N THR A 15 AA1 2 3 N LYS A 10 ? N LYS A 10 O LEU A 59 ? O LEU A 59 AA1 3 4 O ASN A 58 ? O ASN A 58 N PHE A 38 ? N PHE A 38 AA1 4 5 N ALA A 39 ? N ALA A 39 O VAL A 101 ? O VAL A 101 # _atom_sites.entry_id 7KII _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018045 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015073 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014033 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 HIS 26 26 26 HIS HIS A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 TRP 77 77 77 TRP TRP A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 LYS 107 107 ? ? ? A . n A 1 108 GLY 108 108 ? ? ? A . n A 1 109 ARG 109 109 ? ? ? A . n A 1 110 SER 110 110 ? ? ? A . n A 1 111 SER 111 111 ? ? ? A . n B 2 1 DT 1 299 299 DT DT C . n B 2 2 DA 2 300 300 DA DA C . n B 2 3 DT 3 301 301 DT DT C . n B 2 4 DT 4 302 302 DT DT C . n B 2 5 DA 5 303 303 DA DA C . n B 2 6 DT 6 304 304 DT DT C . n B 2 7 DT 7 305 305 DT DT C . n B 2 8 DA 8 306 306 DA DA C . n B 2 9 DC 9 307 307 DC DC C . n B 2 10 DC 10 308 308 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN 1 201 201 MN MN A . D 4 CA 1 202 1 CA CA A . E 4 CA 1 203 2 CA CA A . F 5 SO4 1 204 1 SO4 SO4 A . G 6 HOH 1 301 148 HOH HOH A . G 6 HOH 2 302 115 HOH HOH A . G 6 HOH 3 303 140 HOH HOH A . G 6 HOH 4 304 61 HOH HOH A . G 6 HOH 5 305 120 HOH HOH A . G 6 HOH 6 306 19 HOH HOH A . G 6 HOH 7 307 90 HOH HOH A . G 6 HOH 8 308 113 HOH HOH A . G 6 HOH 9 309 46 HOH HOH A . G 6 HOH 10 310 144 HOH HOH A . G 6 HOH 11 311 134 HOH HOH A . G 6 HOH 12 312 63 HOH HOH A . G 6 HOH 13 313 14 HOH HOH A . G 6 HOH 14 314 3 HOH HOH A . G 6 HOH 15 315 65 HOH HOH A . G 6 HOH 16 316 21 HOH HOH A . G 6 HOH 17 317 34 HOH HOH A . G 6 HOH 18 318 178 HOH HOH A . G 6 HOH 19 319 32 HOH HOH A . G 6 HOH 20 320 91 HOH HOH A . G 6 HOH 21 321 41 HOH HOH A . G 6 HOH 22 322 165 HOH HOH A . G 6 HOH 23 323 20 HOH HOH A . G 6 HOH 24 324 93 HOH HOH A . G 6 HOH 25 325 16 HOH HOH A . G 6 HOH 26 326 67 HOH HOH A . G 6 HOH 27 327 8 HOH HOH A . G 6 HOH 28 328 6 HOH HOH A . G 6 HOH 29 329 166 HOH HOH A . G 6 HOH 30 330 87 HOH HOH A . G 6 HOH 31 331 53 HOH HOH A . G 6 HOH 32 332 82 HOH HOH A . G 6 HOH 33 333 56 HOH HOH A . G 6 HOH 34 334 95 HOH HOH A . G 6 HOH 35 335 22 HOH HOH A . G 6 HOH 36 336 12 HOH HOH A . G 6 HOH 37 337 83 HOH HOH A . G 6 HOH 38 338 69 HOH HOH A . G 6 HOH 39 339 48 HOH HOH A . G 6 HOH 40 340 42 HOH HOH A . G 6 HOH 41 341 78 HOH HOH A . G 6 HOH 42 342 75 HOH HOH A . G 6 HOH 43 343 36 HOH HOH A . G 6 HOH 44 344 45 HOH HOH A . G 6 HOH 45 345 84 HOH HOH A . G 6 HOH 46 346 39 HOH HOH A . G 6 HOH 47 347 40 HOH HOH A . G 6 HOH 48 348 4 HOH HOH A . G 6 HOH 49 349 17 HOH HOH A . G 6 HOH 50 350 11 HOH HOH A . G 6 HOH 51 351 81 HOH HOH A . G 6 HOH 52 352 28 HOH HOH A . G 6 HOH 53 353 101 HOH HOH A . G 6 HOH 54 354 80 HOH HOH A . G 6 HOH 55 355 60 HOH HOH A . G 6 HOH 56 356 2 HOH HOH A . G 6 HOH 57 357 23 HOH HOH A . G 6 HOH 58 358 137 HOH HOH A . G 6 HOH 59 359 187 HOH HOH A . G 6 HOH 60 360 168 HOH HOH A . G 6 HOH 61 361 122 HOH HOH A . G 6 HOH 62 362 106 HOH HOH A . G 6 HOH 63 363 156 HOH HOH A . G 6 HOH 64 364 169 HOH HOH A . G 6 HOH 65 365 157 HOH HOH A . G 6 HOH 66 366 104 HOH HOH A . G 6 HOH 67 367 29 HOH HOH A . G 6 HOH 68 368 5 HOH HOH A . G 6 HOH 69 369 73 HOH HOH A . G 6 HOH 70 370 54 HOH HOH A . G 6 HOH 71 371 99 HOH HOH A . G 6 HOH 72 372 1 HOH HOH A . G 6 HOH 73 373 55 HOH HOH A . G 6 HOH 74 374 102 HOH HOH A . G 6 HOH 75 375 47 HOH HOH A . G 6 HOH 76 376 116 HOH HOH A . G 6 HOH 77 377 64 HOH HOH A . G 6 HOH 78 378 142 HOH HOH A . G 6 HOH 79 379 184 HOH HOH A . G 6 HOH 80 380 171 HOH HOH A . G 6 HOH 81 381 159 HOH HOH A . G 6 HOH 82 382 79 HOH HOH A . G 6 HOH 83 383 124 HOH HOH A . G 6 HOH 84 384 71 HOH HOH A . G 6 HOH 85 385 151 HOH HOH A . G 6 HOH 86 386 163 HOH HOH A . G 6 HOH 87 387 167 HOH HOH A . G 6 HOH 88 388 174 HOH HOH A . G 6 HOH 89 389 158 HOH HOH A . G 6 HOH 90 390 139 HOH HOH A . G 6 HOH 91 391 152 HOH HOH A . G 6 HOH 92 392 150 HOH HOH A . G 6 HOH 93 393 153 HOH HOH A . G 6 HOH 94 394 172 HOH HOH A . G 6 HOH 95 395 72 HOH HOH A . G 6 HOH 96 396 186 HOH HOH A . G 6 HOH 97 397 117 HOH HOH A . G 6 HOH 98 398 112 HOH HOH A . G 6 HOH 99 399 188 HOH HOH A . G 6 HOH 100 400 129 HOH HOH A . G 6 HOH 101 401 177 HOH HOH A . G 6 HOH 102 402 191 HOH HOH A . G 6 HOH 103 403 141 HOH HOH A . G 6 HOH 104 404 26 HOH HOH A . G 6 HOH 105 405 110 HOH HOH A . G 6 HOH 106 406 131 HOH HOH A . G 6 HOH 107 407 119 HOH HOH A . G 6 HOH 108 408 189 HOH HOH A . G 6 HOH 109 409 128 HOH HOH A . G 6 HOH 110 410 59 HOH HOH A . G 6 HOH 111 411 145 HOH HOH A . G 6 HOH 112 412 107 HOH HOH A . G 6 HOH 113 413 109 HOH HOH A . G 6 HOH 114 414 58 HOH HOH A . G 6 HOH 115 415 108 HOH HOH A . G 6 HOH 116 416 70 HOH HOH A . G 6 HOH 117 417 85 HOH HOH A . G 6 HOH 118 418 185 HOH HOH A . G 6 HOH 119 419 103 HOH HOH A . G 6 HOH 120 420 130 HOH HOH A . G 6 HOH 121 421 138 HOH HOH A . G 6 HOH 122 422 135 HOH HOH A . G 6 HOH 123 423 111 HOH HOH A . G 6 HOH 124 424 155 HOH HOH A . G 6 HOH 125 425 68 HOH HOH A . G 6 HOH 126 426 179 HOH HOH A . G 6 HOH 127 427 97 HOH HOH A . H 6 HOH 1 401 127 HOH HOH C . H 6 HOH 2 402 50 HOH HOH C . H 6 HOH 3 403 18 HOH HOH C . H 6 HOH 4 404 190 HOH HOH C . H 6 HOH 5 405 98 HOH HOH C . H 6 HOH 6 406 76 HOH HOH C . H 6 HOH 7 407 27 HOH HOH C . H 6 HOH 8 408 176 HOH HOH C . H 6 HOH 9 409 57 HOH HOH C . H 6 HOH 10 410 38 HOH HOH C . H 6 HOH 11 411 88 HOH HOH C . H 6 HOH 12 412 62 HOH HOH C . H 6 HOH 13 413 25 HOH HOH C . H 6 HOH 14 414 15 HOH HOH C . H 6 HOH 15 415 52 HOH HOH C . H 6 HOH 16 416 31 HOH HOH C . H 6 HOH 17 417 154 HOH HOH C . H 6 HOH 18 418 9 HOH HOH C . H 6 HOH 19 419 24 HOH HOH C . H 6 HOH 20 420 44 HOH HOH C . H 6 HOH 21 421 10 HOH HOH C . H 6 HOH 22 422 181 HOH HOH C . H 6 HOH 23 423 92 HOH HOH C . H 6 HOH 24 424 35 HOH HOH C . H 6 HOH 25 425 77 HOH HOH C . H 6 HOH 26 426 132 HOH HOH C . H 6 HOH 27 427 94 HOH HOH C . H 6 HOH 28 428 180 HOH HOH C . H 6 HOH 29 429 7 HOH HOH C . H 6 HOH 30 430 37 HOH HOH C . H 6 HOH 31 431 136 HOH HOH C . H 6 HOH 32 432 118 HOH HOH C . H 6 HOH 33 433 162 HOH HOH C . H 6 HOH 34 434 33 HOH HOH C . H 6 HOH 35 435 13 HOH HOH C . H 6 HOH 36 436 30 HOH HOH C . H 6 HOH 37 437 43 HOH HOH C . H 6 HOH 38 438 105 HOH HOH C . H 6 HOH 39 439 121 HOH HOH C . H 6 HOH 40 440 182 HOH HOH C . H 6 HOH 41 441 66 HOH HOH C . H 6 HOH 42 442 149 HOH HOH C . H 6 HOH 43 443 74 HOH HOH C . H 6 HOH 44 444 114 HOH HOH C . H 6 HOH 45 445 175 HOH HOH C . H 6 HOH 46 446 100 HOH HOH C . H 6 HOH 47 447 86 HOH HOH C . H 6 HOH 48 448 133 HOH HOH C . H 6 HOH 49 449 173 HOH HOH C . H 6 HOH 50 450 160 HOH HOH C . H 6 HOH 51 451 146 HOH HOH C . H 6 HOH 52 452 143 HOH HOH C . H 6 HOH 53 453 183 HOH HOH C . H 6 HOH 54 454 51 HOH HOH C . H 6 HOH 55 455 123 HOH HOH C . H 6 HOH 56 456 89 HOH HOH C . H 6 HOH 57 457 164 HOH HOH C . H 6 HOH 58 458 126 HOH HOH C . H 6 HOH 59 459 96 HOH HOH C . H 6 HOH 60 460 125 HOH HOH C . H 6 HOH 61 461 161 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2520 ? 1 MORE -38 ? 1 'SSA (A^2)' 5990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CA _pdbx_struct_special_symmetry.auth_seq_id 203 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id CA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 44 ? A GLU 44 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 110.8 ? 2 OE1 ? A GLU 44 ? A GLU 44 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 OE1 ? A GLN 54 ? A GLN 54 ? 1_555 96.9 ? 3 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 OE1 ? A GLN 54 ? A GLN 54 ? 1_555 86.1 ? 4 OE1 ? A GLU 44 ? A GLU 44 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 O ? G HOH . ? A HOH 372 ? 1_555 95.8 ? 5 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 O ? G HOH . ? A HOH 372 ? 1_555 90.5 ? 6 OE1 ? A GLN 54 ? A GLN 54 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 O ? G HOH . ? A HOH 372 ? 1_555 167.3 ? 7 OE1 ? A GLU 44 ? A GLU 44 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 "O3'" ? B DT 7 ? C DT 305 ? 1_555 154.5 ? 8 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 "O3'" ? B DT 7 ? C DT 305 ? 1_555 94.4 ? 9 OE1 ? A GLN 54 ? A GLN 54 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 "O3'" ? B DT 7 ? C DT 305 ? 1_555 81.0 ? 10 O ? G HOH . ? A HOH 372 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 "O3'" ? B DT 7 ? C DT 305 ? 1_555 87.1 ? 11 OE1 ? A GLU 44 ? A GLU 44 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 OP1 ? B DA 8 ? C DA 306 ? 1_555 93.2 ? 12 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 OP1 ? B DA 8 ? C DA 306 ? 1_555 155.6 ? 13 OE1 ? A GLN 54 ? A GLN 54 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 OP1 ? B DA 8 ? C DA 306 ? 1_555 86.8 ? 14 O ? G HOH . ? A HOH 372 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 OP1 ? B DA 8 ? C DA 306 ? 1_555 91.3 ? 15 "O3'" ? B DT 7 ? C DT 305 ? 1_555 MN ? C MN . ? A MN 201 ? 1_555 OP1 ? B DA 8 ? C DA 306 ? 1_555 61.4 ? 16 O ? G HOH . ? A HOH 343 ? 1_555 CA ? E CA . ? A CA 203 ? 1_555 O ? G HOH . ? A HOH 343 ? 4_555 138.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-11-17 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 # _pdbx_entry_details.entry_id 7KII _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 302 ? ? "C1'" C DT 302 ? ? N1 C DT 302 ? ? 110.76 108.30 2.46 0.30 N 2 1 "O4'" C DA 306 ? ? "C1'" C DA 306 ? ? N9 C DA 306 ? ? 112.97 108.30 4.67 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 64 ? CG ? A ARG 64 CG 2 1 Y 1 A ARG 64 ? CD ? A ARG 64 CD 3 1 Y 1 A ARG 64 ? NE ? A ARG 64 NE 4 1 Y 1 A ARG 64 ? CZ ? A ARG 64 CZ 5 1 Y 1 A ARG 64 ? NH1 ? A ARG 64 NH1 6 1 Y 1 A ARG 64 ? NH2 ? A ARG 64 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A LYS 107 ? A LYS 107 5 1 Y 1 A GLY 108 ? A GLY 108 6 1 Y 1 A ARG 109 ? A ARG 109 7 1 Y 1 A SER 110 ? A SER 110 8 1 Y 1 A SER 111 ? A SER 111 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DT OP3 O N N 159 DT P P N N 160 DT OP1 O N N 161 DT OP2 O N N 162 DT "O5'" O N N 163 DT "C5'" C N N 164 DT "C4'" C N R 165 DT "O4'" O N N 166 DT "C3'" C N S 167 DT "O3'" O N N 168 DT "C2'" C N N 169 DT "C1'" C N R 170 DT N1 N N N 171 DT C2 C N N 172 DT O2 O N N 173 DT N3 N N N 174 DT C4 C N N 175 DT O4 O N N 176 DT C5 C N N 177 DT C7 C N N 178 DT C6 C N N 179 DT HOP3 H N N 180 DT HOP2 H N N 181 DT "H5'" H N N 182 DT "H5''" H N N 183 DT "H4'" H N N 184 DT "H3'" H N N 185 DT "HO3'" H N N 186 DT "H2'" H N N 187 DT "H2''" H N N 188 DT "H1'" H N N 189 DT H3 H N N 190 DT H71 H N N 191 DT H72 H N N 192 DT H73 H N N 193 DT H6 H N N 194 GLN N N N N 195 GLN CA C N S 196 GLN C C N N 197 GLN O O N N 198 GLN CB C N N 199 GLN CG C N N 200 GLN CD C N N 201 GLN OE1 O N N 202 GLN NE2 N N N 203 GLN OXT O N N 204 GLN H H N N 205 GLN H2 H N N 206 GLN HA H N N 207 GLN HB2 H N N 208 GLN HB3 H N N 209 GLN HG2 H N N 210 GLN HG3 H N N 211 GLN HE21 H N N 212 GLN HE22 H N N 213 GLN HXT H N N 214 GLU N N N N 215 GLU CA C N S 216 GLU C C N N 217 GLU O O N N 218 GLU CB C N N 219 GLU CG C N N 220 GLU CD C N N 221 GLU OE1 O N N 222 GLU OE2 O N N 223 GLU OXT O N N 224 GLU H H N N 225 GLU H2 H N N 226 GLU HA H N N 227 GLU HB2 H N N 228 GLU HB3 H N N 229 GLU HG2 H N N 230 GLU HG3 H N N 231 GLU HE2 H N N 232 GLU HXT H N N 233 GLY N N N N 234 GLY CA C N N 235 GLY C C N N 236 GLY O O N N 237 GLY OXT O N N 238 GLY H H N N 239 GLY H2 H N N 240 GLY HA2 H N N 241 GLY HA3 H N N 242 GLY HXT H N N 243 HIS N N N N 244 HIS CA C N S 245 HIS C C N N 246 HIS O O N N 247 HIS CB C N N 248 HIS CG C Y N 249 HIS ND1 N Y N 250 HIS CD2 C Y N 251 HIS CE1 C Y N 252 HIS NE2 N Y N 253 HIS OXT O N N 254 HIS H H N N 255 HIS H2 H N N 256 HIS HA H N N 257 HIS HB2 H N N 258 HIS HB3 H N N 259 HIS HD1 H N N 260 HIS HD2 H N N 261 HIS HE1 H N N 262 HIS HE2 H N N 263 HIS HXT H N N 264 HOH O O N N 265 HOH H1 H N N 266 HOH H2 H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 MN MN MN N N 357 PHE N N N N 358 PHE CA C N S 359 PHE C C N N 360 PHE O O N N 361 PHE CB C N N 362 PHE CG C Y N 363 PHE CD1 C Y N 364 PHE CD2 C Y N 365 PHE CE1 C Y N 366 PHE CE2 C Y N 367 PHE CZ C Y N 368 PHE OXT O N N 369 PHE H H N N 370 PHE H2 H N N 371 PHE HA H N N 372 PHE HB2 H N N 373 PHE HB3 H N N 374 PHE HD1 H N N 375 PHE HD2 H N N 376 PHE HE1 H N N 377 PHE HE2 H N N 378 PHE HZ H N N 379 PHE HXT H N N 380 PRO N N N N 381 PRO CA C N S 382 PRO C C N N 383 PRO O O N N 384 PRO CB C N N 385 PRO CG C N N 386 PRO CD C N N 387 PRO OXT O N N 388 PRO H H N N 389 PRO HA H N N 390 PRO HB2 H N N 391 PRO HB3 H N N 392 PRO HG2 H N N 393 PRO HG3 H N N 394 PRO HD2 H N N 395 PRO HD3 H N N 396 PRO HXT H N N 397 SER N N N N 398 SER CA C N S 399 SER C C N N 400 SER O O N N 401 SER CB C N N 402 SER OG O N N 403 SER OXT O N N 404 SER H H N N 405 SER H2 H N N 406 SER HA H N N 407 SER HB2 H N N 408 SER HB3 H N N 409 SER HG H N N 410 SER HXT H N N 411 SO4 S S N N 412 SO4 O1 O N N 413 SO4 O2 O N N 414 SO4 O3 O N N 415 SO4 O4 O N N 416 THR N N N N 417 THR CA C N S 418 THR C C N N 419 THR O O N N 420 THR CB C N R 421 THR OG1 O N N 422 THR CG2 C N N 423 THR OXT O N N 424 THR H H N N 425 THR H2 H N N 426 THR HA H N N 427 THR HB H N N 428 THR HG1 H N N 429 THR HG21 H N N 430 THR HG22 H N N 431 THR HG23 H N N 432 THR HXT H N N 433 TRP N N N N 434 TRP CA C N S 435 TRP C C N N 436 TRP O O N N 437 TRP CB C N N 438 TRP CG C Y N 439 TRP CD1 C Y N 440 TRP CD2 C Y N 441 TRP NE1 N Y N 442 TRP CE2 C Y N 443 TRP CE3 C Y N 444 TRP CZ2 C Y N 445 TRP CZ3 C Y N 446 TRP CH2 C Y N 447 TRP OXT O N N 448 TRP H H N N 449 TRP H2 H N N 450 TRP HA H N N 451 TRP HB2 H N N 452 TRP HB3 H N N 453 TRP HD1 H N N 454 TRP HE1 H N N 455 TRP HE3 H N N 456 TRP HZ2 H N N 457 TRP HZ3 H N N 458 TRP HH2 H N N 459 TRP HXT H N N 460 TYR N N N N 461 TYR CA C N S 462 TYR C C N N 463 TYR O O N N 464 TYR CB C N N 465 TYR CG C Y N 466 TYR CD1 C Y N 467 TYR CD2 C Y N 468 TYR CE1 C Y N 469 TYR CE2 C Y N 470 TYR CZ C Y N 471 TYR OH O N N 472 TYR OXT O N N 473 TYR H H N N 474 TYR H2 H N N 475 TYR HA H N N 476 TYR HB2 H N N 477 TYR HB3 H N N 478 TYR HD1 H N N 479 TYR HD2 H N N 480 TYR HE1 H N N 481 TYR HE2 H N N 482 TYR HH H N N 483 TYR HXT H N N 484 VAL N N N N 485 VAL CA C N S 486 VAL C C N N 487 VAL O O N N 488 VAL CB C N N 489 VAL CG1 C N N 490 VAL CG2 C N N 491 VAL OXT O N N 492 VAL H H N N 493 VAL H2 H N N 494 VAL HA H N N 495 VAL HB H N N 496 VAL HG11 H N N 497 VAL HG12 H N N 498 VAL HG13 H N N 499 VAL HG21 H N N 500 VAL HG22 H N N 501 VAL HG23 H N N 502 VAL HXT H N N 503 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DT OP3 P sing N N 156 DT OP3 HOP3 sing N N 157 DT P OP1 doub N N 158 DT P OP2 sing N N 159 DT P "O5'" sing N N 160 DT OP2 HOP2 sing N N 161 DT "O5'" "C5'" sing N N 162 DT "C5'" "C4'" sing N N 163 DT "C5'" "H5'" sing N N 164 DT "C5'" "H5''" sing N N 165 DT "C4'" "O4'" sing N N 166 DT "C4'" "C3'" sing N N 167 DT "C4'" "H4'" sing N N 168 DT "O4'" "C1'" sing N N 169 DT "C3'" "O3'" sing N N 170 DT "C3'" "C2'" sing N N 171 DT "C3'" "H3'" sing N N 172 DT "O3'" "HO3'" sing N N 173 DT "C2'" "C1'" sing N N 174 DT "C2'" "H2'" sing N N 175 DT "C2'" "H2''" sing N N 176 DT "C1'" N1 sing N N 177 DT "C1'" "H1'" sing N N 178 DT N1 C2 sing N N 179 DT N1 C6 sing N N 180 DT C2 O2 doub N N 181 DT C2 N3 sing N N 182 DT N3 C4 sing N N 183 DT N3 H3 sing N N 184 DT C4 O4 doub N N 185 DT C4 C5 sing N N 186 DT C5 C7 sing N N 187 DT C5 C6 doub N N 188 DT C7 H71 sing N N 189 DT C7 H72 sing N N 190 DT C7 H73 sing N N 191 DT C6 H6 sing N N 192 GLN N CA sing N N 193 GLN N H sing N N 194 GLN N H2 sing N N 195 GLN CA C sing N N 196 GLN CA CB sing N N 197 GLN CA HA sing N N 198 GLN C O doub N N 199 GLN C OXT sing N N 200 GLN CB CG sing N N 201 GLN CB HB2 sing N N 202 GLN CB HB3 sing N N 203 GLN CG CD sing N N 204 GLN CG HG2 sing N N 205 GLN CG HG3 sing N N 206 GLN CD OE1 doub N N 207 GLN CD NE2 sing N N 208 GLN NE2 HE21 sing N N 209 GLN NE2 HE22 sing N N 210 GLN OXT HXT sing N N 211 GLU N CA sing N N 212 GLU N H sing N N 213 GLU N H2 sing N N 214 GLU CA C sing N N 215 GLU CA CB sing N N 216 GLU CA HA sing N N 217 GLU C O doub N N 218 GLU C OXT sing N N 219 GLU CB CG sing N N 220 GLU CB HB2 sing N N 221 GLU CB HB3 sing N N 222 GLU CG CD sing N N 223 GLU CG HG2 sing N N 224 GLU CG HG3 sing N N 225 GLU CD OE1 doub N N 226 GLU CD OE2 sing N N 227 GLU OE2 HE2 sing N N 228 GLU OXT HXT sing N N 229 GLY N CA sing N N 230 GLY N H sing N N 231 GLY N H2 sing N N 232 GLY CA C sing N N 233 GLY CA HA2 sing N N 234 GLY CA HA3 sing N N 235 GLY C O doub N N 236 GLY C OXT sing N N 237 GLY OXT HXT sing N N 238 HIS N CA sing N N 239 HIS N H sing N N 240 HIS N H2 sing N N 241 HIS CA C sing N N 242 HIS CA CB sing N N 243 HIS CA HA sing N N 244 HIS C O doub N N 245 HIS C OXT sing N N 246 HIS CB CG sing N N 247 HIS CB HB2 sing N N 248 HIS CB HB3 sing N N 249 HIS CG ND1 sing Y N 250 HIS CG CD2 doub Y N 251 HIS ND1 CE1 doub Y N 252 HIS ND1 HD1 sing N N 253 HIS CD2 NE2 sing Y N 254 HIS CD2 HD2 sing N N 255 HIS CE1 NE2 sing Y N 256 HIS CE1 HE1 sing N N 257 HIS NE2 HE2 sing N N 258 HIS OXT HXT sing N N 259 HOH O H1 sing N N 260 HOH O H2 sing N N 261 ILE N CA sing N N 262 ILE N H sing N N 263 ILE N H2 sing N N 264 ILE CA C sing N N 265 ILE CA CB sing N N 266 ILE CA HA sing N N 267 ILE C O doub N N 268 ILE C OXT sing N N 269 ILE CB CG1 sing N N 270 ILE CB CG2 sing N N 271 ILE CB HB sing N N 272 ILE CG1 CD1 sing N N 273 ILE CG1 HG12 sing N N 274 ILE CG1 HG13 sing N N 275 ILE CG2 HG21 sing N N 276 ILE CG2 HG22 sing N N 277 ILE CG2 HG23 sing N N 278 ILE CD1 HD11 sing N N 279 ILE CD1 HD12 sing N N 280 ILE CD1 HD13 sing N N 281 ILE OXT HXT sing N N 282 LEU N CA sing N N 283 LEU N H sing N N 284 LEU N H2 sing N N 285 LEU CA C sing N N 286 LEU CA CB sing N N 287 LEU CA HA sing N N 288 LEU C O doub N N 289 LEU C OXT sing N N 290 LEU CB CG sing N N 291 LEU CB HB2 sing N N 292 LEU CB HB3 sing N N 293 LEU CG CD1 sing N N 294 LEU CG CD2 sing N N 295 LEU CG HG sing N N 296 LEU CD1 HD11 sing N N 297 LEU CD1 HD12 sing N N 298 LEU CD1 HD13 sing N N 299 LEU CD2 HD21 sing N N 300 LEU CD2 HD22 sing N N 301 LEU CD2 HD23 sing N N 302 LEU OXT HXT sing N N 303 LYS N CA sing N N 304 LYS N H sing N N 305 LYS N H2 sing N N 306 LYS CA C sing N N 307 LYS CA CB sing N N 308 LYS CA HA sing N N 309 LYS C O doub N N 310 LYS C OXT sing N N 311 LYS CB CG sing N N 312 LYS CB HB2 sing N N 313 LYS CB HB3 sing N N 314 LYS CG CD sing N N 315 LYS CG HG2 sing N N 316 LYS CG HG3 sing N N 317 LYS CD CE sing N N 318 LYS CD HD2 sing N N 319 LYS CD HD3 sing N N 320 LYS CE NZ sing N N 321 LYS CE HE2 sing N N 322 LYS CE HE3 sing N N 323 LYS NZ HZ1 sing N N 324 LYS NZ HZ2 sing N N 325 LYS NZ HZ3 sing N N 326 LYS OXT HXT sing N N 327 MET N CA sing N N 328 MET N H sing N N 329 MET N H2 sing N N 330 MET CA C sing N N 331 MET CA CB sing N N 332 MET CA HA sing N N 333 MET C O doub N N 334 MET C OXT sing N N 335 MET CB CG sing N N 336 MET CB HB2 sing N N 337 MET CB HB3 sing N N 338 MET CG SD sing N N 339 MET CG HG2 sing N N 340 MET CG HG3 sing N N 341 MET SD CE sing N N 342 MET CE HE1 sing N N 343 MET CE HE2 sing N N 344 MET CE HE3 sing N N 345 MET OXT HXT sing N N 346 PHE N CA sing N N 347 PHE N H sing N N 348 PHE N H2 sing N N 349 PHE CA C sing N N 350 PHE CA CB sing N N 351 PHE CA HA sing N N 352 PHE C O doub N N 353 PHE C OXT sing N N 354 PHE CB CG sing N N 355 PHE CB HB2 sing N N 356 PHE CB HB3 sing N N 357 PHE CG CD1 doub Y N 358 PHE CG CD2 sing Y N 359 PHE CD1 CE1 sing Y N 360 PHE CD1 HD1 sing N N 361 PHE CD2 CE2 doub Y N 362 PHE CD2 HD2 sing N N 363 PHE CE1 CZ doub Y N 364 PHE CE1 HE1 sing N N 365 PHE CE2 CZ sing Y N 366 PHE CE2 HE2 sing N N 367 PHE CZ HZ sing N N 368 PHE OXT HXT sing N N 369 PRO N CA sing N N 370 PRO N CD sing N N 371 PRO N H sing N N 372 PRO CA C sing N N 373 PRO CA CB sing N N 374 PRO CA HA sing N N 375 PRO C O doub N N 376 PRO C OXT sing N N 377 PRO CB CG sing N N 378 PRO CB HB2 sing N N 379 PRO CB HB3 sing N N 380 PRO CG CD sing N N 381 PRO CG HG2 sing N N 382 PRO CG HG3 sing N N 383 PRO CD HD2 sing N N 384 PRO CD HD3 sing N N 385 PRO OXT HXT sing N N 386 SER N CA sing N N 387 SER N H sing N N 388 SER N H2 sing N N 389 SER CA C sing N N 390 SER CA CB sing N N 391 SER CA HA sing N N 392 SER C O doub N N 393 SER C OXT sing N N 394 SER CB OG sing N N 395 SER CB HB2 sing N N 396 SER CB HB3 sing N N 397 SER OG HG sing N N 398 SER OXT HXT sing N N 399 SO4 S O1 doub N N 400 SO4 S O2 doub N N 401 SO4 S O3 sing N N 402 SO4 S O4 sing N N 403 THR N CA sing N N 404 THR N H sing N N 405 THR N H2 sing N N 406 THR CA C sing N N 407 THR CA CB sing N N 408 THR CA HA sing N N 409 THR C O doub N N 410 THR C OXT sing N N 411 THR CB OG1 sing N N 412 THR CB CG2 sing N N 413 THR CB HB sing N N 414 THR OG1 HG1 sing N N 415 THR CG2 HG21 sing N N 416 THR CG2 HG22 sing N N 417 THR CG2 HG23 sing N N 418 THR OXT HXT sing N N 419 TRP N CA sing N N 420 TRP N H sing N N 421 TRP N H2 sing N N 422 TRP CA C sing N N 423 TRP CA CB sing N N 424 TRP CA HA sing N N 425 TRP C O doub N N 426 TRP C OXT sing N N 427 TRP CB CG sing N N 428 TRP CB HB2 sing N N 429 TRP CB HB3 sing N N 430 TRP CG CD1 doub Y N 431 TRP CG CD2 sing Y N 432 TRP CD1 NE1 sing Y N 433 TRP CD1 HD1 sing N N 434 TRP CD2 CE2 doub Y N 435 TRP CD2 CE3 sing Y N 436 TRP NE1 CE2 sing Y N 437 TRP NE1 HE1 sing N N 438 TRP CE2 CZ2 sing Y N 439 TRP CE3 CZ3 doub Y N 440 TRP CE3 HE3 sing N N 441 TRP CZ2 CH2 doub Y N 442 TRP CZ2 HZ2 sing N N 443 TRP CZ3 CH2 sing Y N 444 TRP CZ3 HZ3 sing N N 445 TRP CH2 HH2 sing N N 446 TRP OXT HXT sing N N 447 TYR N CA sing N N 448 TYR N H sing N N 449 TYR N H2 sing N N 450 TYR CA C sing N N 451 TYR CA CB sing N N 452 TYR CA HA sing N N 453 TYR C O doub N N 454 TYR C OXT sing N N 455 TYR CB CG sing N N 456 TYR CB HB2 sing N N 457 TYR CB HB3 sing N N 458 TYR CG CD1 doub Y N 459 TYR CG CD2 sing Y N 460 TYR CD1 CE1 sing Y N 461 TYR CD1 HD1 sing N N 462 TYR CD2 CE2 doub Y N 463 TYR CD2 HD2 sing N N 464 TYR CE1 CZ doub Y N 465 TYR CE1 HE1 sing N N 466 TYR CE2 CZ sing Y N 467 TYR CE2 HE2 sing N N 468 TYR CZ OH sing N N 469 TYR OH HH sing N N 470 TYR OXT HXT sing N N 471 VAL N CA sing N N 472 VAL N H sing N N 473 VAL N H2 sing N N 474 VAL CA C sing N N 475 VAL CA CB sing N N 476 VAL CA HA sing N N 477 VAL C O doub N N 478 VAL C OXT sing N N 479 VAL CB CG1 sing N N 480 VAL CB CG2 sing N N 481 VAL CB HB sing N N 482 VAL CG1 HG11 sing N N 483 VAL CG1 HG12 sing N N 484 VAL CG1 HG13 sing N N 485 VAL CG2 HG21 sing N N 486 VAL CG2 HG22 sing N N 487 VAL CG2 HG23 sing N N 488 VAL OXT HXT sing N N 489 # _ndb_struct_conf_na.entry_id 7KII _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 4 1_555 B DA 8 1_555 -0.116 -0.147 -0.377 -7.106 16.779 -3.818 1 C_DT302:DA306_C C 302 ? C 306 ? 20 1 1 B DA 5 1_555 B DT 7 1_555 3.585 0.422 -0.404 6.668 11.476 84.893 2 C_DA303:DT305_C C 303 ? C 305 ? ? 5 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 B _ndb_struct_na_base_pair_step.i_label_comp_id_1 DT _ndb_struct_na_base_pair_step.i_label_seq_id_1 4 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 B _ndb_struct_na_base_pair_step.j_label_comp_id_1 DA _ndb_struct_na_base_pair_step.j_label_seq_id_1 8 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 B _ndb_struct_na_base_pair_step.i_label_comp_id_2 DA _ndb_struct_na_base_pair_step.i_label_seq_id_2 5 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 B _ndb_struct_na_base_pair_step.j_label_comp_id_2 DT _ndb_struct_na_base_pair_step.j_label_seq_id_2 7 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift 2.763 _ndb_struct_na_base_pair_step.slide 1.056 _ndb_struct_na_base_pair_step.rise 2.871 _ndb_struct_na_base_pair_step.tilt -5.901 _ndb_struct_na_base_pair_step.roll 5.233 _ndb_struct_na_base_pair_step.twist 12.104 _ndb_struct_na_base_pair_step.x_displacement 0.658 _ndb_struct_na_base_pair_step.y_displacement -14.990 _ndb_struct_na_base_pair_step.helical_rise 1.665 _ndb_struct_na_base_pair_step.inclination 22.014 _ndb_struct_na_base_pair_step.tip 24.823 _ndb_struct_na_base_pair_step.helical_twist 14.439 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name CC_DT302DA303:DT305DA306_CC _ndb_struct_na_base_pair_step.i_auth_asym_id_1 C _ndb_struct_na_base_pair_step.i_auth_seq_id_1 302 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 C _ndb_struct_na_base_pair_step.j_auth_seq_id_1 306 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 C _ndb_struct_na_base_pair_step.i_auth_seq_id_2 303 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 C _ndb_struct_na_base_pair_step.j_auth_seq_id_2 305 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM119483 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM118047 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MANGANESE (II) ION' MN 4 'CALCIUM ION' CA 5 'SULFATE ION' SO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6WDZ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? #