HEADER CELL ADHESION 26-OCT-20 7KJO TITLE CRYSTAL STRUCTURE OF PLEKHA7 PH DOMAIN BIDING SO4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PH DOMAIN-CONTAINING FAMILY A MEMBER 7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLEKHA7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLEKHA7, PH DOMAIN, PLECKSTRIN HOMOLOGY DOMAIN, PIP, INOSITOL- KEYWDS 2 PHOSPHATE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR F.M.MARASSI,A.E.ALESHIN,R.C.LIDDINGTON REVDAT 4 18-OCT-23 7KJO 1 REMARK REVDAT 3 15-SEP-21 7KJO 1 JRNL REVDAT 2 05-MAY-21 7KJO 1 JRNL REVDAT 1 07-APR-21 7KJO 0 JRNL AUTH A.E.ALESHIN,Y.YAO,A.IFTIKHAR,A.A.BOBKOV,J.YU,G.CADWELL, JRNL AUTH 2 M.G.KLEIN,C.DONG,L.A.BANKSTON,R.C.LIDDINGTON,W.IM,G.POWIS, JRNL AUTH 3 F.M.MARASSI JRNL TITL STRUCTURAL BASIS FOR THE ASSOCIATION OF PLEKHA7 WITH JRNL TITL 2 MEMBRANE-EMBEDDED PHOSPHATIDYLINOSITOL LIPIDS. JRNL REF STRUCTURE V. 29 1029 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33878292 JRNL DOI 10.1016/J.STR.2021.03.018 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 43487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8200 - 4.5044 1.00 2725 134 0.1667 0.1667 REMARK 3 2 4.5044 - 3.5757 1.00 2693 144 0.1278 0.1363 REMARK 3 3 3.5757 - 3.1238 1.00 2671 161 0.1342 0.1758 REMARK 3 4 3.1238 - 2.8382 1.00 2696 153 0.1578 0.1838 REMARK 3 5 2.8382 - 2.6348 1.00 2705 159 0.1508 0.1660 REMARK 3 6 2.6348 - 2.4795 1.00 2668 152 0.1446 0.1610 REMARK 3 7 2.4795 - 2.3553 1.00 2766 149 0.1442 0.1193 REMARK 3 8 2.3553 - 2.2528 1.00 2655 137 0.1399 0.1704 REMARK 3 9 2.2528 - 2.1661 1.00 2740 123 0.1397 0.1663 REMARK 3 10 2.1661 - 2.0913 1.00 2688 125 0.1394 0.1808 REMARK 3 11 2.0913 - 2.0259 1.00 2729 127 0.1426 0.1795 REMARK 3 12 2.0259 - 1.9680 1.00 2706 151 0.1397 0.1716 REMARK 3 13 1.9680 - 1.9162 1.00 2682 124 0.1380 0.1810 REMARK 3 14 1.9162 - 1.8695 0.99 2687 142 0.1502 0.1393 REMARK 3 15 1.8695 - 1.8270 0.99 2690 136 0.1510 0.1965 REMARK 3 16 1.8270 - 1.7881 1.00 2711 134 0.1627 0.1808 REMARK 3 17 1.7881 - 1.7523 0.99 2652 138 0.1627 0.1968 REMARK 3 18 1.7523 - 1.7193 0.99 2710 157 0.1591 0.2246 REMARK 3 19 1.7193 - 1.6885 1.00 2670 145 0.1659 0.1847 REMARK 3 20 1.6885 - 1.6599 0.99 2685 140 0.1650 0.2079 REMARK 3 21 1.6599 - 1.6331 0.99 2718 130 0.1776 0.2207 REMARK 3 22 1.6331 - 1.6080 0.99 2655 139 0.1797 0.2220 REMARK 3 23 1.6080 - 1.5844 0.99 2682 146 0.1841 0.1799 REMARK 3 24 1.5844 - 1.5621 0.99 2647 159 0.1893 0.2036 REMARK 3 25 1.5621 - 1.5409 0.99 2652 143 0.2043 0.2060 REMARK 3 26 1.5409 - 1.5209 0.99 2691 143 0.2240 0.2438 REMARK 3 27 1.5209 - 1.5019 0.98 2677 160 0.2355 0.2959 REMARK 3 28 1.5019 - 1.4838 0.99 2636 157 0.2615 0.2764 REMARK 3 29 1.4838 - 1.4666 0.98 2675 113 0.2829 0.2767 REMARK 3 30 1.4666 - 1.4501 0.95 2557 150 0.3146 0.3442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9151 68.3007 31.8568 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: 0.2034 REMARK 3 T33: 0.1780 T12: 0.0125 REMARK 3 T13: 0.0034 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.8259 L22: 3.4568 REMARK 3 L33: 4.5742 L12: 0.1927 REMARK 3 L13: 1.4349 L23: -0.9326 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: -0.1969 S13: -0.1047 REMARK 3 S21: 0.5217 S22: 0.1226 S23: -0.1018 REMARK 3 S31: -0.1432 S32: -0.1078 S33: -0.0682 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4385 70.8912 30.1702 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.1208 REMARK 3 T33: 0.1089 T12: 0.0008 REMARK 3 T13: 0.0151 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.3968 L22: 1.8514 REMARK 3 L33: 2.0306 L12: 0.7224 REMARK 3 L13: 0.3742 L23: 0.4615 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: -0.0982 S13: 0.1457 REMARK 3 S21: 0.2012 S22: -0.0325 S23: 0.1502 REMARK 3 S31: 0.0083 S32: -0.1053 S33: -0.0096 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4290 75.9126 35.7490 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1756 REMARK 3 T33: 0.1374 T12: -0.0206 REMARK 3 T13: 0.0100 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.0583 L22: 3.7000 REMARK 3 L33: 3.2971 L12: 0.4887 REMARK 3 L13: 1.9778 L23: -0.0722 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: -0.1405 S13: 0.0232 REMARK 3 S21: 0.3146 S22: -0.0662 S23: 0.1102 REMARK 3 S31: -0.1821 S32: 0.0138 S33: 0.1764 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7445 78.6541 27.6148 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.1370 REMARK 3 T33: 0.1736 T12: -0.0391 REMARK 3 T13: -0.0094 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 3.0947 L22: 3.0533 REMARK 3 L33: 3.3795 L12: -0.1651 REMARK 3 L13: -0.4658 L23: 0.2615 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.2393 S13: 0.3204 REMARK 3 S21: -0.0344 S22: 0.0207 S23: 0.0929 REMARK 3 S31: -0.2570 S32: 0.0501 S33: -0.0171 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3579 68.2902 43.4042 REMARK 3 T TENSOR REMARK 3 T11: 0.4181 T22: 0.7118 REMARK 3 T33: 0.2833 T12: -0.1179 REMARK 3 T13: 0.0032 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.1924 L22: 0.0308 REMARK 3 L33: 3.6426 L12: -0.3451 REMARK 3 L13: -3.4174 L23: 0.3731 REMARK 3 S TENSOR REMARK 3 S11: 0.5008 S12: -0.1977 S13: 0.0810 REMARK 3 S21: -0.3036 S22: 0.2030 S23: -0.4300 REMARK 3 S31: -0.0492 S32: 0.3826 S33: -0.6635 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9877 63.9537 41.8355 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.1540 REMARK 3 T33: 0.1009 T12: -0.0195 REMARK 3 T13: 0.0027 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.5119 L22: 1.4990 REMARK 3 L33: 1.7085 L12: 0.0235 REMARK 3 L13: 0.6685 L23: -0.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0642 S13: -0.0051 REMARK 3 S21: -0.1376 S22: 0.0903 S23: 0.0621 REMARK 3 S31: 0.0151 S32: 0.0473 S33: -0.0676 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4878 61.1000 26.3279 REMARK 3 T TENSOR REMARK 3 T11: 0.4933 T22: 0.3012 REMARK 3 T33: 0.3207 T12: -0.0246 REMARK 3 T13: -0.0526 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.8221 L22: 9.2201 REMARK 3 L33: 2.0044 L12: 3.4087 REMARK 3 L13: -0.9551 L23: -1.2324 REMARK 3 S TENSOR REMARK 3 S11: 0.4158 S12: 0.3437 S13: 0.0187 REMARK 3 S21: -0.9470 S22: -0.1573 S23: 0.2509 REMARK 3 S31: -0.3259 S32: -0.1163 S33: -0.3786 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7144 63.4357 38.9404 REMARK 3 T TENSOR REMARK 3 T11: 0.1916 T22: 0.1884 REMARK 3 T33: 0.1635 T12: -0.0172 REMARK 3 T13: 0.0136 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.8320 L22: 1.5147 REMARK 3 L33: 1.5681 L12: -0.5578 REMARK 3 L13: -0.1731 L23: -0.7756 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: 0.0503 S13: -0.0001 REMARK 3 S21: -0.2644 S22: 0.0820 S23: 0.0228 REMARK 3 S31: 0.1496 S32: 0.0160 S33: -0.0078 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 198 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9403 53.9666 43.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.1178 REMARK 3 T33: 0.2096 T12: 0.0302 REMARK 3 T13: 0.0353 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 5.6829 L22: 0.9631 REMARK 3 L33: 9.5711 L12: -1.9740 REMARK 3 L13: -0.7951 L23: 1.3435 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: 0.0147 S13: -0.7413 REMARK 3 S21: -0.0864 S22: 0.0394 S23: -0.3937 REMARK 3 S31: 0.9917 S32: 0.3447 S33: -0.0116 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1413 70.7412 33.5817 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.2303 REMARK 3 T33: 0.2029 T12: -0.0053 REMARK 3 T13: 0.0124 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.5565 L22: 0.0401 REMARK 3 L33: 1.1499 L12: 0.0762 REMARK 3 L13: -0.3979 L23: 0.1620 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.2981 S13: 0.1108 REMARK 3 S21: -0.0802 S22: 0.0063 S23: 0.0315 REMARK 3 S31: 0.0359 S32: -0.1327 S33: 0.0487 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 219 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2903 70.8402 34.2254 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.1737 REMARK 3 T33: 0.1362 T12: 0.0108 REMARK 3 T13: -0.0022 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.8987 L22: 2.9006 REMARK 3 L33: 3.9284 L12: -0.4259 REMARK 3 L13: 1.3746 L23: -0.4869 REMARK 3 S TENSOR REMARK 3 S11: -0.1099 S12: 0.0773 S13: 0.0241 REMARK 3 S21: -0.1225 S22: 0.0144 S23: 0.0603 REMARK 3 S31: -0.1509 S32: -0.2429 S33: 0.1203 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6446 75.6782 42.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.1419 REMARK 3 T33: 0.1785 T12: 0.0260 REMARK 3 T13: 0.0081 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 7.0401 L22: 2.4435 REMARK 3 L33: 4.1757 L12: 1.7865 REMARK 3 L13: -2.9605 L23: -1.0155 REMARK 3 S TENSOR REMARK 3 S11: 0.2586 S12: -0.2939 S13: 0.6080 REMARK 3 S21: 0.0755 S22: -0.0163 S23: 0.0793 REMARK 3 S31: -0.4184 S32: -0.0064 S33: -0.2085 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 164 THROUGH 236 OR REMARK 3 RESID 258 THROUGH 283 OR RESID 302)) REMARK 3 SELECTION : (CHAIN B AND (RESID 164 THROUGH 283 OR REMARK 3 RESID 303)) REMARK 3 ATOM PAIRS NUMBER : 952 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46929 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 45.842 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN IN 180 MM NACL AND 20 MM REMARK 280 SODIUM PHOSPHATE MIXED WITH 25% GLYCEROL, 2 M AMMONIUM SULFATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.61650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.80825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.42475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 159 REMARK 465 PRO A 160 REMARK 465 LEU A 161 REMARK 465 GLY A 162 REMARK 465 SER A 163 REMARK 465 GLY A 237 REMARK 465 MET A 238 REMARK 465 ARG A 239 REMARK 465 ALA A 240 REMARK 465 LEU A 241 REMARK 465 ILE A 242 REMARK 465 TYR A 243 REMARK 465 ASN A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 THR A 247 REMARK 465 ALA A 248 REMARK 465 GLY A 249 REMARK 465 SER A 250 REMARK 465 GLN A 251 REMARK 465 ALA A 252 REMARK 465 GLU A 253 REMARK 465 GLN A 254 REMARK 465 SER A 255 REMARK 465 LEU A 284 REMARK 465 SER A 285 REMARK 465 ARG A 286 REMARK 465 SER A 287 REMARK 465 SER A 288 REMARK 465 LEU A 289 REMARK 465 LYS A 290 REMARK 465 ARG A 291 REMARK 465 ASP A 292 REMARK 465 MET A 293 REMARK 465 GLU A 294 REMARK 465 LYS A 295 REMARK 465 VAL A 296 REMARK 465 GLU A 297 REMARK 465 ARG A 298 REMARK 465 GLY B 237 REMARK 465 MET B 238 REMARK 465 ARG B 239 REMARK 465 ALA B 240 REMARK 465 LEU B 241 REMARK 465 ILE B 242 REMARK 465 TYR B 243 REMARK 465 ASN B 244 REMARK 465 SER B 245 REMARK 465 SER B 246 REMARK 465 THR B 247 REMARK 465 ALA B 248 REMARK 465 GLY B 249 REMARK 465 SER B 250 REMARK 465 GLN B 251 REMARK 465 ALA B 252 REMARK 465 GLU B 253 REMARK 465 GLN B 254 REMARK 465 SER B 255 REMARK 465 GLY B 256 REMARK 465 MET B 257 REMARK 465 SER B 285 REMARK 465 ARG B 286 REMARK 465 SER B 287 REMARK 465 SER B 288 REMARK 465 LEU B 289 REMARK 465 LYS B 290 REMARK 465 ARG B 291 REMARK 465 ASP B 292 REMARK 465 MET B 293 REMARK 465 GLU B 294 REMARK 465 LYS B 295 REMARK 465 VAL B 296 REMARK 465 GLU B 297 REMARK 465 ARG B 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 227 CG - CD - NE ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 203 -74.76 -84.95 REMARK 500 SER A 213 -2.01 76.17 REMARK 500 GLU B 203 -77.02 -90.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 DBREF 7KJO A 164 298 UNP Q6IQ23 PKHA7_HUMAN 164 298 DBREF 7KJO B 164 298 UNP Q6IQ23 PKHA7_HUMAN 164 298 SEQADV 7KJO GLY A 159 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO PRO A 160 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO LEU A 161 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO GLY A 162 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO SER A 163 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO GLY B 159 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO PRO B 160 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO LEU B 161 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO GLY B 162 UNP Q6IQ23 EXPRESSION TAG SEQADV 7KJO SER B 163 UNP Q6IQ23 EXPRESSION TAG SEQRES 1 A 140 GLY PRO LEU GLY SER PRO VAL VAL VAL ARG GLY TRP LEU SEQRES 2 A 140 HIS LYS GLN ASP SER SER GLY MET ARG LEU TRP LYS ARG SEQRES 3 A 140 ARG TRP PHE VAL LEU ALA ASP TYR CYS LEU PHE TYR TYR SEQRES 4 A 140 LYS ASP SER ARG GLU GLU ALA VAL LEU GLY SER ILE PRO SEQRES 5 A 140 LEU PRO SER TYR VAL ILE SER PRO VAL ALA PRO GLU ASP SEQRES 6 A 140 ARG ILE SER ARG LYS TYR SER PHE LYS ALA VAL HIS THR SEQRES 7 A 140 GLY MET ARG ALA LEU ILE TYR ASN SER SER THR ALA GLY SEQRES 8 A 140 SER GLN ALA GLU GLN SER GLY MET ARG THR TYR TYR PHE SEQRES 9 A 140 SER ALA ASP THR GLN GLU ASP MET ASN ALA TRP VAL ARG SEQRES 10 A 140 ALA MET ASN GLN ALA ALA GLN VAL LEU SER ARG SER SER SEQRES 11 A 140 LEU LYS ARG ASP MET GLU LYS VAL GLU ARG SEQRES 1 B 140 GLY PRO LEU GLY SER PRO VAL VAL VAL ARG GLY TRP LEU SEQRES 2 B 140 HIS LYS GLN ASP SER SER GLY MET ARG LEU TRP LYS ARG SEQRES 3 B 140 ARG TRP PHE VAL LEU ALA ASP TYR CYS LEU PHE TYR TYR SEQRES 4 B 140 LYS ASP SER ARG GLU GLU ALA VAL LEU GLY SER ILE PRO SEQRES 5 B 140 LEU PRO SER TYR VAL ILE SER PRO VAL ALA PRO GLU ASP SEQRES 6 B 140 ARG ILE SER ARG LYS TYR SER PHE LYS ALA VAL HIS THR SEQRES 7 B 140 GLY MET ARG ALA LEU ILE TYR ASN SER SER THR ALA GLY SEQRES 8 B 140 SER GLN ALA GLU GLN SER GLY MET ARG THR TYR TYR PHE SEQRES 9 B 140 SER ALA ASP THR GLN GLU ASP MET ASN ALA TRP VAL ARG SEQRES 10 B 140 ALA MET ASN GLN ALA ALA GLN VAL LEU SER ARG SER SER SEQRES 11 B 140 LEU LYS ARG ASP MET GLU LYS VAL GLU ARG HET SO4 A 300 5 HET GOL A 301 12 HET SO4 A 302 5 HET GOL B 300 14 HET GOL B 301 14 HET SO4 B 302 5 HET SO4 B 303 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 10 HOH *207(H2 O) HELIX 1 AA1 ALA A 220 ARG A 224 5 5 HELIX 2 AA2 THR A 266 GLN A 282 1 17 HELIX 3 AA3 GLY B 159 SER B 163 5 5 HELIX 4 AA4 ALA B 220 ARG B 224 5 5 HELIX 5 AA5 THR B 266 GLN B 282 1 17 SHEET 1 AA1 7 VAL A 205 PRO A 210 0 SHEET 2 AA1 7 CYS A 193 TYR A 197 -1 N TYR A 196 O LEU A 206 SHEET 3 AA1 7 TRP A 182 ALA A 190 -1 N VAL A 188 O PHE A 195 SHEET 4 AA1 7 VAL A 165 GLN A 174 -1 N VAL A 167 O LEU A 189 SHEET 5 AA1 7 THR A 259 SER A 263 -1 O SER A 263 N HIS A 172 SHEET 6 AA1 7 SER A 230 HIS A 235 -1 N PHE A 231 O PHE A 262 SHEET 7 AA1 7 TYR A 214 PRO A 218 -1 N SER A 217 O LYS A 232 SHEET 1 AA2 7 GLY B 207 PRO B 210 0 SHEET 2 AA2 7 CYS B 193 TYR B 197 -1 N LEU B 194 O ILE B 209 SHEET 3 AA2 7 TRP B 182 ALA B 190 -1 N VAL B 188 O PHE B 195 SHEET 4 AA2 7 VAL B 165 GLN B 174 -1 N GLY B 169 O PHE B 187 SHEET 5 AA2 7 THR B 259 SER B 263 -1 O SER B 263 N HIS B 172 SHEET 6 AA2 7 SER B 230 HIS B 235 -1 N PHE B 231 O PHE B 262 SHEET 7 AA2 7 TYR B 214 PRO B 218 -1 N SER B 217 O LYS B 232 SITE 1 AC1 7 GLN A 174 TRP A 182 ILE A 225 SER A 226 SITE 2 AC1 7 ARG A 227 HOH A 402 HOH A 427 SITE 1 AC2 10 VAL A 167 ARG A 168 GLY A 169 ASP A 269 SITE 2 AC2 10 TRP A 273 HOH A 410 HOH A 450 HOH A 465 SITE 3 AC2 10 TRP B 170 SER B 200 SITE 1 AC3 5 LYS A 173 ARG A 185 TYR A 196 HOH A 401 SITE 2 AC3 5 HOH A 405 SITE 1 AC4 7 TRP A 170 SER A 200 VAL B 167 ARG B 168 SITE 2 AC4 7 ASP B 269 TRP B 273 HOH B 416 SITE 1 AC5 7 GLY B 159 PRO B 160 TYR B 197 HOH B 419 SITE 2 AC5 7 HOH B 429 HOH B 448 HOH B 468 SITE 1 AC6 3 LYS B 173 ARG B 185 TYR B 196 SITE 1 AC7 9 GLN B 174 TRP B 182 ARG B 224 ILE B 225 SITE 2 AC7 9 SER B 226 ARG B 227 LYS B 228 HOH B 404 SITE 3 AC7 9 HOH B 407 CRYST1 64.830 64.830 59.233 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016882 0.00000