HEADER TRANSFERASE 27-OCT-20 7KKQ TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF TANKYRASE 1 IN COMPLEX WITH TITLE 2 VELIPARIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PARP; COMPND 5 EC: 2.4.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARP1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.S.GAJIWALA,K.RYAN REVDAT 4 18-OCT-23 7KKQ 1 REMARK REVDAT 3 28-APR-21 7KKQ 1 JRNL REVDAT 2 13-JAN-21 7KKQ 1 JRNL REVDAT 1 06-JAN-21 7KKQ 0 JRNL AUTH K.RYAN,B.BOLANOS,M.SMITH,P.B.PALDE,P.D.CUENCA, JRNL AUTH 2 T.L.VANARSDALE,S.NIESSEN,L.ZHANG,D.BEHENNA,M.A.ORNELAS, JRNL AUTH 3 K.T.TRAN,S.KAISER,L.LUM,A.STEWART,K.S.GAJIWALA JRNL TITL DISSECTING THE MOLECULAR DETERMINANTS OF CLINICAL PARP1 JRNL TITL 2 INHIBITOR SELECTIVITY FOR TANKYRASE1. JRNL REF J.BIOL.CHEM. V. 296 00251 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33361107 JRNL DOI 10.1074/JBC.RA120.016573 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.5 REMARK 3 NUMBER OF REFLECTIONS : 110379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5532 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 15.10 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2208 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2188 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2102 REMARK 3 BIN R VALUE (WORKING SET) : 0.2199 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 106 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 833 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08920 REMARK 3 B22 (A**2) : -0.18570 REMARK 3 B33 (A**2) : 0.09650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.116 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.108 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.108 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.104 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7040 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9494 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2482 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1234 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7040 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 861 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8408 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.98 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.51 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 79.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RF5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUFFER: 0.1 M SODIUM CITRATE (PH 5.60) REMARK 280 SALT: 1.0 M AMMONIUM FORMATE PRECIPITANT: 23.0 %W/V PEG 4000, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.09500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.09500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1102 REMARK 465 SER A 1103 REMARK 465 GLN A 1104 REMARK 465 GLU A 1314 REMARK 465 GLY B 1102 REMARK 465 SER B 1103 REMARK 465 GLN B 1104 REMARK 465 HIS B 1132 REMARK 465 ARG B 1133 REMARK 465 ASP B 1134 REMARK 465 GLY B 1135 REMARK 465 GLY B 1136 REMARK 465 ASN B 1137 REMARK 465 GLU B 1314 REMARK 465 GLY C 1102 REMARK 465 SER C 1103 REMARK 465 GLN C 1104 REMARK 465 ASP C 1134 REMARK 465 GLY C 1135 REMARK 465 GLY C 1136 REMARK 465 GLU C 1314 REMARK 465 GLY D 1102 REMARK 465 SER D 1103 REMARK 465 GLN D 1104 REMARK 465 GLY D 1135 REMARK 465 GLY D 1136 REMARK 465 ASN D 1137 REMARK 465 GLU D 1314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN D1285 C - N - CA ANGL. DEV. = 22.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1173 47.07 -141.14 REMARK 500 ILE B1228 46.06 -109.52 REMARK 500 MET C1266 89.86 -152.71 REMARK 500 VAL C1284 -53.18 -29.31 REMARK 500 PHE D1188 31.71 -98.12 REMARK 500 VAL D1284 -72.99 -22.37 REMARK 500 ASN D1285 -37.87 106.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A9318 DISTANCE = 7.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A9002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1234 SG REMARK 620 2 HIS A1237 ND1 109.1 REMARK 620 3 CYS A1242 SG 110.0 110.7 REMARK 620 4 CYS A1245 SG 112.6 98.5 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B9002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1234 SG REMARK 620 2 HIS B1237 ND1 109.3 REMARK 620 3 CYS B1242 SG 111.8 103.8 REMARK 620 4 CYS B1245 SG 115.8 100.2 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C9002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1234 SG REMARK 620 2 HIS C1237 ND1 102.9 REMARK 620 3 CYS C1242 SG 111.4 114.9 REMARK 620 4 CYS C1245 SG 120.5 101.8 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D9002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1234 SG REMARK 620 2 HIS D1237 ND1 104.0 REMARK 620 3 CYS D1242 SG 111.7 114.2 REMARK 620 4 CYS D1245 SG 118.6 102.9 105.6 REMARK 620 N 1 2 3 DBREF 7KKQ A 1104 1314 UNP Q59FX0 Q59FX0_HUMAN 832 1042 DBREF 7KKQ B 1104 1314 UNP Q59FX0 Q59FX0_HUMAN 832 1042 DBREF 7KKQ C 1104 1314 UNP Q59FX0 Q59FX0_HUMAN 832 1042 DBREF 7KKQ D 1104 1314 UNP Q59FX0 Q59FX0_HUMAN 832 1042 SEQADV 7KKQ GLY A 1102 UNP Q59FX0 EXPRESSION TAG SEQADV 7KKQ SER A 1103 UNP Q59FX0 EXPRESSION TAG SEQADV 7KKQ GLY B 1102 UNP Q59FX0 EXPRESSION TAG SEQADV 7KKQ SER B 1103 UNP Q59FX0 EXPRESSION TAG SEQADV 7KKQ GLY C 1102 UNP Q59FX0 EXPRESSION TAG SEQADV 7KKQ SER C 1103 UNP Q59FX0 EXPRESSION TAG SEQADV 7KKQ GLY D 1102 UNP Q59FX0 EXPRESSION TAG SEQADV 7KKQ SER D 1103 UNP Q59FX0 EXPRESSION TAG SEQRES 1 A 213 GLY SER GLN GLY THR ILE LEU LEU ASP LEU ALA PRO GLU SEQRES 2 A 213 ASP LYS GLU TYR GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 3 A 213 THR ILE ARG GLU HIS ARG ASP GLY GLY ASN ALA GLY GLY SEQRES 4 A 213 ILE PHE ASN ARG TYR ASN VAL ILE ARG ILE GLN LYS VAL SEQRES 5 A 213 VAL ASN LYS LYS LEU ARG GLU ARG PHE CYS HIS ARG GLN SEQRES 6 A 213 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS HIS ASN GLU SEQRES 7 A 213 ARG MET LEU PHE HIS GLY SER PRO PHE ILE ASN ALA ILE SEQRES 8 A 213 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 9 A 213 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 10 A 213 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 11 A 213 THR GLY CYS PRO THR HIS LYS ASP ARG SER CYS TYR ILE SEQRES 12 A 213 CYS HIS ARG GLN MET LEU PHE CYS ARG VAL THR LEU GLY SEQRES 13 A 213 LYS SER PHE LEU GLN PHE SER THR MET LYS MET ALA HIS SEQRES 14 A 213 ALA PRO PRO GLY HIS HIS SER VAL ILE GLY ARG PRO SER SEQRES 15 A 213 VAL ASN GLY LEU ALA TYR ALA GLU TYR VAL ILE TYR ARG SEQRES 16 A 213 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 17 A 213 ILE MET LYS PRO GLU SEQRES 1 B 213 GLY SER GLN GLY THR ILE LEU LEU ASP LEU ALA PRO GLU SEQRES 2 B 213 ASP LYS GLU TYR GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 3 B 213 THR ILE ARG GLU HIS ARG ASP GLY GLY ASN ALA GLY GLY SEQRES 4 B 213 ILE PHE ASN ARG TYR ASN VAL ILE ARG ILE GLN LYS VAL SEQRES 5 B 213 VAL ASN LYS LYS LEU ARG GLU ARG PHE CYS HIS ARG GLN SEQRES 6 B 213 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS HIS ASN GLU SEQRES 7 B 213 ARG MET LEU PHE HIS GLY SER PRO PHE ILE ASN ALA ILE SEQRES 8 B 213 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 9 B 213 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 10 B 213 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 11 B 213 THR GLY CYS PRO THR HIS LYS ASP ARG SER CYS TYR ILE SEQRES 12 B 213 CYS HIS ARG GLN MET LEU PHE CYS ARG VAL THR LEU GLY SEQRES 13 B 213 LYS SER PHE LEU GLN PHE SER THR MET LYS MET ALA HIS SEQRES 14 B 213 ALA PRO PRO GLY HIS HIS SER VAL ILE GLY ARG PRO SER SEQRES 15 B 213 VAL ASN GLY LEU ALA TYR ALA GLU TYR VAL ILE TYR ARG SEQRES 16 B 213 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 17 B 213 ILE MET LYS PRO GLU SEQRES 1 C 213 GLY SER GLN GLY THR ILE LEU LEU ASP LEU ALA PRO GLU SEQRES 2 C 213 ASP LYS GLU TYR GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 3 C 213 THR ILE ARG GLU HIS ARG ASP GLY GLY ASN ALA GLY GLY SEQRES 4 C 213 ILE PHE ASN ARG TYR ASN VAL ILE ARG ILE GLN LYS VAL SEQRES 5 C 213 VAL ASN LYS LYS LEU ARG GLU ARG PHE CYS HIS ARG GLN SEQRES 6 C 213 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS HIS ASN GLU SEQRES 7 C 213 ARG MET LEU PHE HIS GLY SER PRO PHE ILE ASN ALA ILE SEQRES 8 C 213 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 9 C 213 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 10 C 213 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 11 C 213 THR GLY CYS PRO THR HIS LYS ASP ARG SER CYS TYR ILE SEQRES 12 C 213 CYS HIS ARG GLN MET LEU PHE CYS ARG VAL THR LEU GLY SEQRES 13 C 213 LYS SER PHE LEU GLN PHE SER THR MET LYS MET ALA HIS SEQRES 14 C 213 ALA PRO PRO GLY HIS HIS SER VAL ILE GLY ARG PRO SER SEQRES 15 C 213 VAL ASN GLY LEU ALA TYR ALA GLU TYR VAL ILE TYR ARG SEQRES 16 C 213 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 17 C 213 ILE MET LYS PRO GLU SEQRES 1 D 213 GLY SER GLN GLY THR ILE LEU LEU ASP LEU ALA PRO GLU SEQRES 2 D 213 ASP LYS GLU TYR GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 3 D 213 THR ILE ARG GLU HIS ARG ASP GLY GLY ASN ALA GLY GLY SEQRES 4 D 213 ILE PHE ASN ARG TYR ASN VAL ILE ARG ILE GLN LYS VAL SEQRES 5 D 213 VAL ASN LYS LYS LEU ARG GLU ARG PHE CYS HIS ARG GLN SEQRES 6 D 213 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS HIS ASN GLU SEQRES 7 D 213 ARG MET LEU PHE HIS GLY SER PRO PHE ILE ASN ALA ILE SEQRES 8 D 213 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 9 D 213 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 10 D 213 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 11 D 213 THR GLY CYS PRO THR HIS LYS ASP ARG SER CYS TYR ILE SEQRES 12 D 213 CYS HIS ARG GLN MET LEU PHE CYS ARG VAL THR LEU GLY SEQRES 13 D 213 LYS SER PHE LEU GLN PHE SER THR MET LYS MET ALA HIS SEQRES 14 D 213 ALA PRO PRO GLY HIS HIS SER VAL ILE GLY ARG PRO SER SEQRES 15 D 213 VAL ASN GLY LEU ALA TYR ALA GLU TYR VAL ILE TYR ARG SEQRES 16 D 213 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 17 D 213 ILE MET LYS PRO GLU HET 78P A9001 18 HET ZN A9002 1 HET 78P B9001 18 HET ZN B9002 1 HET 78P C9001 18 HET ZN C9002 1 HET 78P D9001 18 HET ZN D9002 1 HETNAM 78P (2R)-2-(7-CARBAMOYL-1H-BENZIMIDAZOL-2-YL)-2- HETNAM 2 78P METHYLPYRROLIDINIUM HETNAM ZN ZINC ION HETSYN 78P VELIPARIB FORMUL 5 78P 4(C13 H16 N4 O) FORMUL 6 ZN 4(ZN 2+) FORMUL 13 HOH *833(H2 O) HELIX 1 AA1 ASP A 1115 THR A 1128 1 14 HELIX 2 AA2 ASN A 1155 GLU A 1172 1 18 HELIX 3 AA3 PHE A 1188 GLY A 1196 1 9 HELIX 4 AA4 ASP A 1198 ALA A 1202 5 5 HELIX 5 AA5 ASN A 1217 GLN A 1223 1 7 HELIX 6 AA6 GLY A 1227 GLY A 1231 5 5 HELIX 7 AA7 ARG A 1296 GLU A 1298 5 3 HELIX 8 AA8 ASP B 1115 THR B 1128 1 14 HELIX 9 AA9 ASN B 1155 GLU B 1172 1 18 HELIX 10 AB1 PHE B 1188 GLY B 1196 1 9 HELIX 11 AB2 ASP B 1198 ALA B 1202 5 5 HELIX 12 AB3 ASN B 1217 GLN B 1223 1 7 HELIX 13 AB4 ARG B 1296 GLU B 1298 5 3 HELIX 14 AB5 ASP C 1115 THR C 1128 1 14 HELIX 15 AB6 ASN C 1155 ASN C 1173 1 19 HELIX 16 AB7 PHE C 1188 GLY C 1196 1 9 HELIX 17 AB8 ASP C 1198 ALA C 1202 5 5 HELIX 18 AB9 ASN C 1217 ASN C 1222 1 6 HELIX 19 AC1 GLN C 1223 VAL C 1225 5 3 HELIX 20 AC2 ARG C 1296 GLU C 1298 5 3 HELIX 21 AC3 ASP D 1115 THR D 1128 1 14 HELIX 22 AC4 ASN D 1155 GLU D 1172 1 18 HELIX 23 AC5 PHE D 1188 GLY D 1196 1 9 HELIX 24 AC6 ASP D 1198 ALA D 1202 5 5 HELIX 25 AC7 ASN D 1217 ASN D 1222 1 6 HELIX 26 AC8 GLN D 1223 VAL D 1225 5 3 HELIX 27 AC9 ARG D 1296 GLU D 1298 5 3 SHEET 1 AA1 5 ILE A1107 ASP A1110 0 SHEET 2 AA1 5 TYR A1145 VAL A1154 -1 O VAL A1154 N ILE A1107 SHEET 3 AA1 5 ALA A1300 ILE A1310 -1 O GLN A1309 N ASN A1146 SHEET 4 AA1 5 ARG A1247 THR A1255 -1 N ARG A1247 O TYR A1308 SHEET 5 AA1 5 GLU A1179 HIS A1184 -1 N LEU A1182 O CYS A1252 SHEET 1 AA2 4 ILE A1212 ALA A1215 0 SHEET 2 AA2 4 GLU A1291 ILE A1294 -1 O ILE A1294 N ILE A1212 SHEET 3 AA2 4 SER A1277 GLY A1280 -1 N VAL A1278 O VAL A1293 SHEET 4 AA2 4 SER A1259 GLN A1262 1 N GLN A1262 O ILE A1279 SHEET 1 AA3 5 ILE B1107 ASP B1110 0 SHEET 2 AA3 5 TYR B1145 VAL B1154 -1 O VAL B1154 N ILE B1107 SHEET 3 AA3 5 ALA B1300 ILE B1310 -1 O LEU B1305 N GLN B1151 SHEET 4 AA3 5 ARG B1247 THR B1255 -1 N ARG B1247 O TYR B1308 SHEET 5 AA3 5 GLU B1179 HIS B1184 -1 N LEU B1182 O CYS B1252 SHEET 1 AA4 4 ILE B1212 ALA B1215 0 SHEET 2 AA4 4 GLU B1291 ILE B1294 -1 O ILE B1294 N ILE B1212 SHEET 3 AA4 4 SER B1277 GLY B1280 -1 N VAL B1278 O VAL B1293 SHEET 4 AA4 4 SER B1259 GLN B1262 1 N PHE B1260 O ILE B1279 SHEET 1 AA5 5 ILE C1107 ASP C1110 0 SHEET 2 AA5 5 TYR C1145 VAL C1154 -1 O VAL C1154 N ILE C1107 SHEET 3 AA5 5 ALA C1300 ILE C1310 -1 O GLN C1309 N ASN C1146 SHEET 4 AA5 5 ARG C1247 THR C1255 -1 N MET C1249 O ILE C1306 SHEET 5 AA5 5 GLU C1179 GLY C1185 -1 N LEU C1182 O CYS C1252 SHEET 1 AA6 4 ILE C1212 ALA C1215 0 SHEET 2 AA6 4 GLU C1291 ILE C1294 -1 O TYR C1292 N PHE C1214 SHEET 3 AA6 4 SER C1277 GLY C1280 -1 N VAL C1278 O VAL C1293 SHEET 4 AA6 4 SER C1259 GLN C1262 1 N GLN C1262 O ILE C1279 SHEET 1 AA7 5 ILE D1107 ASP D1110 0 SHEET 2 AA7 5 TYR D1145 VAL D1154 -1 O LYS D1152 N LEU D1109 SHEET 3 AA7 5 ALA D1300 ILE D1310 -1 O LEU D1305 N GLN D1151 SHEET 4 AA7 5 ARG D1247 THR D1255 -1 N MET D1249 O ILE D1306 SHEET 5 AA7 5 GLU D1179 GLY D1185 -1 N LEU D1182 O CYS D1252 SHEET 1 AA8 4 ILE D1212 ALA D1215 0 SHEET 2 AA8 4 GLU D1291 ILE D1294 -1 O TYR D1292 N PHE D1214 SHEET 3 AA8 4 SER D1277 GLY D1280 -1 N VAL D1278 O VAL D1293 SHEET 4 AA8 4 SER D1259 GLN D1262 1 N GLN D1262 O ILE D1279 LINK SG CYS A1234 ZN ZN A9002 1555 1555 2.36 LINK ND1 HIS A1237 ZN ZN A9002 1555 1555 2.12 LINK SG CYS A1242 ZN ZN A9002 1555 1555 2.27 LINK SG CYS A1245 ZN ZN A9002 1555 1555 2.37 LINK SG CYS B1234 ZN ZN B9002 1555 1555 2.29 LINK ND1 HIS B1237 ZN ZN B9002 1555 1555 2.17 LINK SG CYS B1242 ZN ZN B9002 1555 1555 2.29 LINK SG CYS B1245 ZN ZN B9002 1555 1555 2.23 LINK SG CYS C1234 ZN ZN C9002 1555 1555 2.37 LINK ND1 HIS C1237 ZN ZN C9002 1555 1555 2.10 LINK SG CYS C1242 ZN ZN C9002 1555 1555 2.36 LINK SG CYS C1245 ZN ZN C9002 1555 1555 2.33 LINK SG CYS D1234 ZN ZN D9002 1555 1555 2.32 LINK ND1 HIS D1237 ZN ZN D9002 1555 1555 2.12 LINK SG CYS D1242 ZN ZN D9002 1555 1555 2.26 LINK SG CYS D1245 ZN ZN D9002 1555 1555 2.33 CISPEP 1 ILE B 1228 GLY B 1229 0 -0.96 CISPEP 2 ASN B 1285 GLY B 1286 0 -1.80 CISPEP 3 VAL D 1284 ASN D 1285 0 4.87 CRYST1 76.190 159.100 84.270 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011867 0.00000