HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 02-NOV-20 7KM7 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE (DHFR) FROM MYCOBACTERIUM TITLE 2 ULCERANS AGY99 IN COMPLEX WITH NADP AND INHIBITOR SDDC-0001914, TITLE 3 TETRAGONAL CRYSTAL FROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ULCERANS (STRAIN AGY99); SOURCE 3 ORGANISM_TAXID: 362242; SOURCE 4 STRAIN: AGY99; SOURCE 5 GENE: DFRA, MUL_2179; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MYULA.01062.A.B13 KEYWDS SSGCID, SDDC, INHIBITOR, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE, KEYWDS 3 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7KM7 1 REMARK REVDAT 1 07-JUL-21 7KM7 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE (DHFR) FROM JRNL TITL 2 MYCOBACTERIUM ULCERANS AGY99 IN COMPLEX WITH NADP AND JRNL TITL 3 INHIBITOR SDDC-0001914, TETRAGONAL CRYSTAL FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6600 - 4.3400 0.99 1582 158 0.1545 0.1760 REMARK 3 2 4.3400 - 3.4400 1.00 1481 138 0.1461 0.1485 REMARK 3 3 3.4400 - 3.0100 1.00 1471 132 0.1712 0.2357 REMARK 3 4 3.0100 - 2.7300 1.00 1441 146 0.1975 0.2116 REMARK 3 5 2.7300 - 2.5400 1.00 1425 141 0.1866 0.2295 REMARK 3 6 2.5400 - 2.3900 1.00 1439 142 0.1852 0.2361 REMARK 3 7 2.3900 - 2.2700 1.00 1396 150 0.2041 0.2490 REMARK 3 8 2.2700 - 2.1700 1.00 1402 166 0.2065 0.2676 REMARK 3 9 2.1700 - 2.0900 1.00 1414 140 0.1913 0.2340 REMARK 3 10 2.0900 - 2.0100 1.00 1411 137 0.2051 0.2394 REMARK 3 11 2.0100 - 1.9500 1.00 1406 126 0.2094 0.2512 REMARK 3 12 1.9500 - 1.9000 1.00 1408 145 0.2274 0.3053 REMARK 3 13 1.8900 - 1.8500 1.00 1396 140 0.2745 0.3324 REMARK 3 14 1.8500 - 1.8000 0.99 1383 142 0.3252 0.3477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.241 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1343 REMARK 3 ANGLE : 0.961 1843 REMARK 3 CHIRALITY : 0.061 202 REMARK 3 PLANARITY : 0.009 251 REMARK 3 DIHEDRAL : 14.258 506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7547 16.4219 -0.3261 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.3365 REMARK 3 T33: 0.2008 T12: -0.0102 REMARK 3 T13: -0.0655 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 5.6429 L22: 5.3097 REMARK 3 L33: 0.1437 L12: 0.2830 REMARK 3 L13: 0.5791 L23: 0.6280 REMARK 3 S TENSOR REMARK 3 S11: 0.2732 S12: -0.2516 S13: -0.5213 REMARK 3 S21: 0.0603 S22: -0.2906 S23: -0.2346 REMARK 3 S31: 0.0836 S32: 0.2753 S33: -0.0381 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0679 26.2326 -6.9288 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.2866 REMARK 3 T33: 0.2232 T12: 0.0250 REMARK 3 T13: -0.0385 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 9.3662 L22: 5.7828 REMARK 3 L33: 7.6793 L12: -4.3661 REMARK 3 L13: -6.9803 L23: 4.9040 REMARK 3 S TENSOR REMARK 3 S11: 0.3109 S12: 0.0972 S13: 0.4098 REMARK 3 S21: -0.3295 S22: 0.0063 S23: -0.0095 REMARK 3 S31: -0.3562 S32: -0.2470 S33: -0.3533 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6923 14.2959 -13.6967 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.3843 REMARK 3 T33: 0.2315 T12: 0.0897 REMARK 3 T13: -0.0691 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 5.3810 L22: 3.2434 REMARK 3 L33: 3.2459 L12: -0.2362 REMARK 3 L13: -0.1118 L23: 1.1594 REMARK 3 S TENSOR REMARK 3 S11: 0.2962 S12: 0.7957 S13: -0.5852 REMARK 3 S21: -0.3057 S22: -0.2391 S23: 0.0572 REMARK 3 S31: -0.0827 S32: -0.2194 S33: -0.0651 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3445 7.5032 -19.6686 REMARK 3 T TENSOR REMARK 3 T11: 0.3592 T22: 0.7163 REMARK 3 T33: 0.5181 T12: 0.1284 REMARK 3 T13: -0.0892 T23: -0.2688 REMARK 3 L TENSOR REMARK 3 L11: 3.9457 L22: 4.4212 REMARK 3 L33: 3.5008 L12: -3.7285 REMARK 3 L13: 0.1995 L23: 1.5221 REMARK 3 S TENSOR REMARK 3 S11: 0.4784 S12: 1.4103 S13: -1.0880 REMARK 3 S21: -0.3055 S22: 0.0139 S23: -0.3029 REMARK 3 S31: 0.1746 S32: 0.5938 S33: -0.4077 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6140 16.6717 -3.6729 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.3680 REMARK 3 T33: 0.2698 T12: 0.0171 REMARK 3 T13: -0.0437 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 5.0885 L22: 4.0056 REMARK 3 L33: 2.6656 L12: -0.0934 REMARK 3 L13: 0.6214 L23: 1.5872 REMARK 3 S TENSOR REMARK 3 S11: 0.3017 S12: -0.0369 S13: -0.4056 REMARK 3 S21: -0.0108 S22: -0.1106 S23: -0.3242 REMARK 3 S31: -0.0173 S32: 0.4575 S33: -0.1524 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0996 28.4461 1.3324 REMARK 3 T TENSOR REMARK 3 T11: 0.2251 T22: 0.3317 REMARK 3 T33: 0.1923 T12: -0.0671 REMARK 3 T13: -0.0265 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 6.7681 L22: 7.2199 REMARK 3 L33: 7.2103 L12: -3.6046 REMARK 3 L13: -1.5150 L23: 3.0488 REMARK 3 S TENSOR REMARK 3 S11: 0.3866 S12: -0.1458 S13: 0.2424 REMARK 3 S21: -0.2777 S22: -0.0986 S23: -0.2825 REMARK 3 S31: -0.5985 S32: -0.3254 S33: -0.2875 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.298 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.34 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NAD AND P218-BOUND STRUCTURE, PDB ENTRY 6UWW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS SCREEN CONDITION B1: 10% REMARK 280 (W/V) PEG 20,000, 20% (V/V) PEG MME 550: 30MM EACH SODIUM REMARK 280 FLUORIDE, SODIUM BROMIDE, SODIUM IODIDE: 100M MES / IMIDAZOLE REMARK 280 HCL PH 6.5: MYULA.01062.A.B11.PS38525 AT 12.52MG/ML + 2.5 MM REMARK 280 NADP AND SDDC-0001914 (BSI111353): TRAY 318485B1: CRYO: DIRECT: REMARK 280 PUCK POQ5-1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.74500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.37250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.11750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.74500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 97.11750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.37250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 BR BR A 203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 90 REMARK 465 ALA A 91 REMARK 465 GLU A 92 REMARK 465 PRO A 93 REMARK 465 ASP A 94 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 74 CG1 CG2 REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WPD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYULA.01062.A.B11 RELATED DB: TARGETTRACK DBREF 7KM7 A 1 165 UNP A0PQG8 A0PQG8_MYCUA 1 165 SEQADV 7KM7 MET A -7 UNP A0PQG8 EXPRESSION TAG SEQADV 7KM7 ALA A -6 UNP A0PQG8 EXPRESSION TAG SEQADV 7KM7 HIS A -5 UNP A0PQG8 EXPRESSION TAG SEQADV 7KM7 HIS A -4 UNP A0PQG8 EXPRESSION TAG SEQADV 7KM7 HIS A -3 UNP A0PQG8 EXPRESSION TAG SEQADV 7KM7 HIS A -2 UNP A0PQG8 EXPRESSION TAG SEQADV 7KM7 HIS A -1 UNP A0PQG8 EXPRESSION TAG SEQADV 7KM7 HIS A 0 UNP A0PQG8 EXPRESSION TAG SEQADV 7KM7 SER A 89 UNP A0PQG8 CYS 89 ENGINEERED MUTATION SEQRES 1 A 173 MET ALA HIS HIS HIS HIS HIS HIS MET THR SER VAL GLY SEQRES 2 A 173 LEU ILE TRP ALA GLN SER THR SER GLY VAL ILE GLY ARG SEQRES 3 A 173 ASP GLY GLY ILE PRO TRP ARG LEU PRO GLU ASP LEU ALA SEQRES 4 A 173 HIS PHE LYS ARG LEU THR MET GLY HIS THR VAL VAL MET SEQRES 5 A 173 GLY ARG ARG THR TRP ASP SER LEU PRO ALA ALA HIS ARG SEQRES 6 A 173 PRO LEU PRO GLY ARG ARG ASN VAL VAL VAL THR ARG GLN SEQRES 7 A 173 THR GLY LEU VAL ALA HIS GLY ALA GLN VAL VAL GLY SER SEQRES 8 A 173 LEU GLU GLN ALA LEU SER PRO ALA GLU PRO ASP ALA GLU SEQRES 9 A 173 THR TRP VAL ILE GLY GLY ALA GLN ILE TYR ALA LEU ALA SEQRES 10 A 173 LEU PRO LEU ALA ASN ARG CYS GLU VAL THR GLU VAL ASP SEQRES 11 A 173 VAL ASP LEU PRO PRO GLU ASP GLU ASP ALA LEU ALA PRO SEQRES 12 A 173 VAL LEU ASP GLN THR TRP ALA GLY THR SER GLY GLU TRP SEQRES 13 A 173 LEU VAL SER ARG SER GLY LEU ARG TYR ARG MET HIS SER SEQRES 14 A 173 TYR ARG ARG LEU HET NAP A 201 48 HET WPD A 202 29 HET BR A 203 1 HET BR A 204 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM WPD (2S)-2-[(3-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 WPD OXY]PROPOXY}PHENYL)METHYL]-3,3-DIFLUOROPROPANOIC ACID HETNAM BR BROMIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 WPD C19 H24 F2 N4 O4 FORMUL 4 BR 2(BR 1-) FORMUL 6 HOH *150(H2 O) HELIX 1 AA1 LEU A 26 MET A 38 1 13 HELIX 2 AA2 ARG A 46 LEU A 52 1 7 HELIX 3 AA3 PRO A 53 ARG A 57 5 5 HELIX 4 AA4 SER A 83 SER A 89 1 7 HELIX 5 AA5 GLY A 102 LEU A 110 1 9 HELIX 6 AA6 PRO A 111 ALA A 113 5 3 SHEET 1 AA1 8 ALA A 78 VAL A 81 0 SHEET 2 AA1 8 ASN A 64 VAL A 67 1 N VAL A 66 O GLN A 79 SHEET 3 AA1 8 THR A 41 GLY A 45 1 N MET A 44 O VAL A 67 SHEET 4 AA1 8 THR A 97 VAL A 99 1 O TRP A 98 N VAL A 43 SHEET 5 AA1 8 VAL A 4 SER A 11 1 N GLY A 5 O VAL A 99 SHEET 6 AA1 8 ARG A 115 VAL A 121 1 O THR A 119 N GLN A 10 SHEET 7 AA1 8 ARG A 156 ARG A 164 -1 O HIS A 160 N VAL A 118 SHEET 8 AA1 8 TRP A 141 SER A 145 -1 N ALA A 142 O ARG A 163 SHEET 1 AA2 8 ALA A 78 VAL A 81 0 SHEET 2 AA2 8 ASN A 64 VAL A 67 1 N VAL A 66 O GLN A 79 SHEET 3 AA2 8 THR A 41 GLY A 45 1 N MET A 44 O VAL A 67 SHEET 4 AA2 8 THR A 97 VAL A 99 1 O TRP A 98 N VAL A 43 SHEET 5 AA2 8 VAL A 4 SER A 11 1 N GLY A 5 O VAL A 99 SHEET 6 AA2 8 ARG A 115 VAL A 121 1 O THR A 119 N GLN A 10 SHEET 7 AA2 8 ARG A 156 ARG A 164 -1 O HIS A 160 N VAL A 118 SHEET 8 AA2 8 LEU A 149 VAL A 150 -1 N LEU A 149 O TYR A 157 SHEET 1 AA3 2 VAL A 15 GLY A 17 0 SHEET 2 AA3 2 ALA A 132 LEU A 133 -1 O ALA A 132 N ILE A 16 CISPEP 1 ARG A 57 PRO A 58 0 -0.79 CISPEP 2 GLY A 101 GLY A 102 0 1.31 SITE 1 AC1 32 TRP A 8 ALA A 9 ILE A 16 GLY A 17 SITE 2 AC1 32 ARG A 18 GLY A 20 GLY A 21 GLY A 45 SITE 3 AC1 32 ARG A 46 ARG A 47 THR A 48 SER A 51 SITE 4 AC1 32 VAL A 67 THR A 68 ARG A 69 GLN A 70 SITE 5 AC1 32 GLY A 82 ILE A 100 GLY A 101 GLY A 102 SITE 6 AC1 32 ALA A 103 GLN A 104 ILE A 105 TYR A 106 SITE 7 AC1 32 LEU A 108 WPD A 202 HOH A 320 HOH A 321 SITE 8 AC1 32 HOH A 325 HOH A 354 HOH A 356 HOH A 361 SITE 1 AC2 14 ILE A 7 TRP A 8 ILE A 22 ASP A 29 SITE 2 AC2 14 LEU A 30 PHE A 33 LYS A 34 LEU A 52 SITE 3 AC2 14 PRO A 53 ARG A 62 ILE A 100 TYR A 106 SITE 4 AC2 14 NAP A 201 HOH A 302 SITE 1 AC3 2 ARG A 25 HOH A 380 CRYST1 59.130 59.130 129.490 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007723 0.00000