HEADER VIRAL PROTEIN/IMMUNE SYSTEM 02-NOV-20 7KMD TITLE CRYSTAL STRUCTURE OF A HIV-1 CLADE C ISOLATE DU172.17 HR1.R4.664 ENV TITLE 2 TRIMER IN COMPLEX WITH HUMAN FABS PGT124 AND 35O22 CAVEAT 7KMD BMA B 3 HAS WRONG CHIRALITY AT ATOM C1 MAN I 4 HAS WRONG CAVEAT 2 7KMD CHIRALITY AT ATOM C1 MAN I 7 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 35O22 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 35O22 LIGHT CHAIN; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE GLYCOPROTEIN GP120; COMPND 11 CHAIN: G; COMPND 12 FRAGMENT: UNP RESIDUES 31-505; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: ENVELOPE GLYCOPROTEIN GP41; COMPND 16 CHAIN: T; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: 124 LIGHT CHAIN; COMPND 20 CHAIN: L; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 6; COMPND 23 MOLECULE: 124 HEAVY CHAIN; COMPND 24 CHAIN: H; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 17 ORGANISM_COMMON: HIV-1; SOURCE 18 ORGANISM_TAXID: 11676; SOURCE 19 GENE: ENV; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 23 MOL_ID: 4; SOURCE 24 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 25 ORGANISM_TAXID: 11676; SOURCE 26 GENE: ENV; SOURCE 27 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 28 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 30 MOL_ID: 5; SOURCE 31 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 32 ORGANISM_COMMON: HUMAN; SOURCE 33 ORGANISM_TAXID: 9606; SOURCE 34 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 35 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 37 MOL_ID: 6; SOURCE 38 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 39 ORGANISM_COMMON: HUMAN; SOURCE 40 ORGANISM_TAXID: 9606; SOURCE 41 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 42 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 43 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV, ENVELOPE, GLYCOPROTEIN, PREFUSION TRIMER, GLYCAN, HIV-1 GP120, KEYWDS 2 HIV-1 GP41, NEUTRALIZING ANTIBODIES, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.KUMAR,I.A.WILSON REVDAT 3 18-OCT-23 7KMD 1 REMARK REVDAT 2 28-JUL-21 7KMD 1 JRNL REVDAT 1 07-JUL-21 7KMD 0 JRNL AUTH S.KUMAR,X.LIN,T.NGO,B.SHAPERO,C.SOU,J.D.ALLEN,J.COPPS, JRNL AUTH 2 L.ZHANG,G.OZOROWSKI,L.HE,M.CRISPIN,A.B.WARD,I.A.WILSON,J.ZHU JRNL TITL NEUTRALIZING ANTIBODIES INDUCED BY FIRST-GENERATION JRNL TITL 2 GP41-STABILIZED HIV-1 ENVELOPE TRIMERS AND NANOPARTICLES. JRNL REF MBIO V. 12 42921 2021 JRNL REFN ESSN 2150-7511 JRNL PMID 34156262 JRNL DOI 10.1128/MBIO.00429-21 REMARK 2 REMARK 2 RESOLUTION. 3.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.338 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 38200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.018 REMARK 3 FREE R VALUE TEST SET COUNT : 1917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5300 - 8.1645 0.99 2736 139 0.2087 0.2395 REMARK 3 2 8.1645 - 6.4850 1.00 2735 137 0.2418 0.2792 REMARK 3 3 6.4850 - 5.6666 1.00 2705 141 0.2329 0.2983 REMARK 3 4 5.6666 - 5.1491 1.00 2692 148 0.2153 0.2510 REMARK 3 5 5.1491 - 4.7804 1.00 2719 142 0.2072 0.2535 REMARK 3 6 4.7804 - 4.4987 1.00 2693 142 0.2087 0.2656 REMARK 3 7 4.4987 - 4.2736 1.00 2681 141 0.2242 0.2918 REMARK 3 8 4.2736 - 4.0876 1.00 2692 144 0.2456 0.2995 REMARK 3 9 4.0876 - 3.9303 1.00 2710 142 0.2779 0.3357 REMARK 3 10 3.9303 - 3.7947 0.99 2675 144 0.2954 0.3604 REMARK 3 11 3.7947 - 3.6761 0.98 2647 140 0.3055 0.3628 REMARK 3 12 3.6761 - 3.5711 0.92 2464 131 0.3171 0.3885 REMARK 3 13 3.5711 - 3.4771 0.84 2256 126 0.3286 0.3844 REMARK 3 14 3.4771 - 3.3923 0.70 1878 100 0.3643 0.4247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.574 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.829 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 12384 REMARK 3 ANGLE : 1.483 16958 REMARK 3 CHIRALITY : 0.119 2056 REMARK 3 PLANARITY : 0.004 2060 REMARK 3 DIHEDRAL : 13.313 4660 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38788 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 5CEZ, 4TOY, 4R26 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH=8.4, 25%(V/V) PEG400, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.26900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 158.26900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 158.26900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, G, T, L, H, B, C, D, F, REMARK 350 AND CHAINS: I, J, K, M, N, O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 241 REMARK 465 PHE A 242 REMARK 465 GLN A 243 REMARK 465 GLN E 0 REMARK 465 CYS E 214 REMARK 465 SER E 215 REMARK 465 THR G 138A REMARK 465 ASN G 138B REMARK 465 ALA G 138C REMARK 465 THR G 138D REMARK 465 TYR G 138E REMARK 465 ASN G 138F REMARK 465 ASN G 138G REMARK 465 ALA G 138H REMARK 465 THR G 138I REMARK 465 TYR G 138J REMARK 465 ASN G 138K REMARK 465 ASN G 138L REMARK 465 ASN G 138M REMARK 465 ASN G 138N REMARK 465 THR G 138O REMARK 465 ILE G 138P REMARK 465 GLY G 185A REMARK 465 LYS G 185B REMARK 465 GLU G 185C REMARK 465 THR G 185D REMARK 465 ASN G 185E REMARK 465 SER G 185F REMARK 465 THR G 185G REMARK 465 ASN G 185H REMARK 465 VAL G 505 REMARK 465 VAL G 506 REMARK 465 GLU G 507 REMARK 465 ARG G 508 REMARK 465 ARG G 509 REMARK 465 ARG G 510 REMARK 465 ARG G 511 REMARK 465 ARG G 512 REMARK 465 ARG G 513 REMARK 465 ALA T 512 REMARK 465 VAL T 513 REMARK 465 GLY T 514 REMARK 465 ILE T 515 REMARK 465 GLY T 516 REMARK 465 ALA T 517 REMARK 465 SER L 0 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 GLN H 1 REMARK 465 SER H 126 REMARK 465 LYS H 127 REMARK 465 SER H 128 REMARK 465 THR H 129 REMARK 465 SER H 130 REMARK 465 GLY H 131 REMARK 465 LYS H 212 REMARK 465 SER H 213 REMARK 465 CYS H 214 REMARK 465 ASP H 215 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP H 100Q CB OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA VAL H 100D O7 NAG I 2 1.38 REMARK 500 O4 NAG I 2 O5 BMA I 3 1.79 REMARK 500 O6 BMA B 3 O5 MAN B 4 1.86 REMARK 500 O3 MAN B 4 C2 MAN B 7 1.93 REMARK 500 O4 NAG B 1 O5 NAG B 2 1.95 REMARK 500 O3 BMA K 4 O5 MAN K 5 2.01 REMARK 500 O2 MAN I 5 O5 MAN I 6 2.02 REMARK 500 OH TYR L 30 CE MET H 100P 2.02 REMARK 500 O4 NAG D 1 O5 NAG D 2 2.08 REMARK 500 C6 BMA I 3 C1 MAN I 7 2.14 REMARK 500 O VAL E 108 OH TYR E 143 2.19 REMARK 500 O4 NAG M 2 O5 BMA M 3 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR H 100O CA - C - N ANGL. DEV. = 32.4 DEGREES REMARK 500 TYR H 100O O - C - N ANGL. DEV. = -33.6 DEGREES REMARK 500 MET H 100P C - N - CA ANGL. DEV. = 33.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 16 -153.44 -89.21 REMARK 500 LYS A 95 -165.32 -128.88 REMARK 500 ASP A 162 86.00 64.15 REMARK 500 SER A 206 53.06 -97.16 REMARK 500 GLN E 5 -156.54 -105.25 REMARK 500 GLN E 15 -159.90 -95.31 REMARK 500 CYS E 29 -168.24 49.44 REMARK 500 SER E 30 -75.94 53.11 REMARK 500 ASP E 52 -60.17 68.82 REMARK 500 PRO E 61 2.70 -65.85 REMARK 500 TRP E 70 -11.90 -140.76 REMARK 500 ASP E 78 77.51 51.73 REMARK 500 THR E 93 -160.21 -118.76 REMARK 500 ASP E 141 64.53 65.71 REMARK 500 SER E 203 -167.14 -161.62 REMARK 500 ASN G 33 83.92 61.56 REMARK 500 PRO G 43 79.48 -67.90 REMARK 500 ASP G 57 -137.88 59.38 REMARK 500 LYS G 59 -8.82 66.81 REMARK 500 GLU G 64 -20.41 68.13 REMARK 500 HIS G 66 51.94 -119.92 REMARK 500 ALA G 73 74.76 -162.70 REMARK 500 PRO G 76 -178.63 -60.40 REMARK 500 ASP G 78 85.82 55.09 REMARK 500 VAL G 127 -168.98 -114.08 REMARK 500 CYS G 131 147.92 68.56 REMARK 500 ILE G 136 59.50 30.41 REMARK 500 LYS G 137 100.34 -56.79 REMARK 500 MET G 154 119.29 -165.57 REMARK 500 TYR G 177 -114.97 47.36 REMARK 500 ALA G 183 -73.44 58.24 REMARK 500 SER G 199 -167.77 59.20 REMARK 500 GLN G 258 -54.35 64.49 REMARK 500 GLU G 269 -164.58 57.79 REMARK 500 ASN G 276 95.98 -170.75 REMARK 500 ALA G 281 32.38 -88.38 REMARK 500 SER G 300 104.45 -56.20 REMARK 500 ASN G 301 99.48 -60.17 REMARK 500 PRO G 362 -179.66 -60.42 REMARK 500 ASN G 391 70.85 -105.02 REMARK 500 SER G 392 -152.33 -110.82 REMARK 500 THR G 393 -62.39 57.40 REMARK 500 TYR G 394 43.83 -89.87 REMARK 500 SER G 396 34.24 -160.20 REMARK 500 ALA G 402 -76.92 57.84 REMARK 500 ILE G 414 103.92 58.04 REMARK 500 GLN G 432 -174.87 61.44 REMARK 500 ASP G 464 -69.90 -120.44 REMARK 500 LEU T 520 -47.86 66.79 REMARK 500 LEU T 523 19.67 58.81 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 7KMD A 1 243 PDB 7KMD 7KMD 1 243 DBREF 7KMD E 0 215 PDB 7KMD 7KMD 0 215 DBREF 7KMD G 32 508 UNP Q202J8 Q202J8_9HIV1 31 505 DBREF 7KMD T 512 664 PDB 7KMD 7KMD 512 664 DBREF 7KMD L 0 213 PDB 7KMD 7KMD 0 213 DBREF 7KMD H 1 215 PDB 7KMD 7KMD 1 215 SEQADV 7KMD CYS G 501 UNP Q202J8 ALA 498 CONFLICT SEQADV 7KMD ARG G 509 UNP Q202J8 EXPRESSION TAG SEQADV 7KMD ARG G 510 UNP Q202J8 EXPRESSION TAG SEQADV 7KMD ARG G 511 UNP Q202J8 EXPRESSION TAG SEQADV 7KMD ARG G 512 UNP Q202J8 EXPRESSION TAG SEQADV 7KMD ARG G 513 UNP Q202J8 EXPRESSION TAG SEQRES 1 A 243 GLU GLY GLN LEU VAL GLN SER GLY ALA GLU LEU LYS LYS SEQRES 2 A 243 PRO GLY ALA SER VAL LYS ILE SER CYS LYS THR SER GLY SEQRES 3 A 243 TYR ARG PHE ASN PHE TYR HIS ILE ASN TRP ILE ARG GLN SEQRES 4 A 243 THR ALA GLY ARG GLY PRO GLU TRP MET GLY TRP ILE SER SEQRES 5 A 243 PRO TYR SER GLY ASP LYS ASN LEU ALA PRO ALA PHE GLN SEQRES 6 A 243 ASP ARG VAL ILE MET THR THR ASP THR GLU VAL PRO VAL SEQRES 7 A 243 THR SER PHE THR SER THR GLY ALA ALA TYR MET GLU ILE SEQRES 8 A 243 ARG ASN LEU LYS PHE ASP ASP THR GLY THR TYR PHE CYS SEQRES 9 A 243 ALA LYS GLY LEU LEU ARG ASP GLY SER SER THR TRP LEU SEQRES 10 A 243 PRO TYR LEU TRP GLY GLN GLY THR LEU LEU THR VAL SER SEQRES 11 A 243 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 A 243 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 A 243 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 A 243 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 A 243 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 A 243 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 A 243 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 A 243 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 19 A 243 ASP LYS GLY LEU GLU VAL LEU PHE GLN SEQRES 1 E 216 GLN SER VAL LEU THR GLN SER ALA SER VAL SER GLY SER SEQRES 2 E 216 LEU GLY GLN SER VAL THR ILE SER CYS THR GLY PRO ASN SEQRES 3 E 216 SER VAL CYS CYS SER HIS LYS SER ILE SER TRP TYR GLN SEQRES 4 E 216 TRP PRO PRO GLY ARG ALA PRO THR LEU ILE ILE TYR GLU SEQRES 5 E 216 ASP ASN GLU ARG ALA PRO GLY ILE SER PRO ARG PHE SER SEQRES 6 E 216 GLY TYR LYS SER TYR TRP SER ALA TYR LEU THR ILE SER SEQRES 7 E 216 ASP LEU ARG PRO GLU ASP GLU THR THR TYR TYR CYS CYS SEQRES 8 E 216 SER TYR THR HIS ASN SER GLY CYS VAL PHE GLY THR GLY SEQRES 9 E 216 THR LYS VAL SER VAL LEU GLY GLN SER LYS ALA ASN PRO SEQRES 10 E 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 E 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 E 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 E 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 E 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 E 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 E 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 E 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 G 480 GLY ASN LEU TRP VAL THR VAL TYR TYR GLY VAL PRO VAL SEQRES 2 G 480 TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER ASP SEQRES 3 G 480 ALA LYS ALA HIS LYS GLU GLU VAL HIS ASN ILE TRP ALA SEQRES 4 G 480 THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN GLU SEQRES 5 G 480 ILE VAL LEU LYS ASN VAL THR GLU ASN PHE ASN MET TRP SEQRES 6 G 480 LYS ASN ASP MET VAL ASP GLN MET HIS GLU ASP ILE ILE SEQRES 7 G 480 SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS LEU SEQRES 8 G 480 THR PRO LEU CYS VAL THR LEU ASN CYS SER ASP VAL LYS SEQRES 9 G 480 ILE LYS GLY THR ASN ALA THR TYR ASN ASN ALA THR TYR SEQRES 10 G 480 ASN ASN ASN ASN THR ILE SER ASP MET LYS ASN CYS SER SEQRES 11 G 480 PHE ASN THR THR THR GLU ILE THR ASP LYS LYS LYS LYS SEQRES 12 G 480 GLU TYR ALA LEU PHE TYR LYS LEU ASP VAL VAL ALA LEU SEQRES 13 G 480 ASP GLY LYS GLU THR ASN SER THR ASN SER SER GLU TYR SEQRES 14 G 480 ARG LEU ILE ASN CYS ASN THR SER ALA VAL THR GLN ALA SEQRES 15 G 480 CYS PRO LYS VAL SER PHE ASP PRO ILE PRO ILE HIS TYR SEQRES 16 G 480 CYS ALA PRO ALA GLY TYR ALA ILE LEU LYS CYS ASN ASN SEQRES 17 G 480 LYS THR PHE ASN GLY THR GLY PRO CYS ASN ASN VAL SER SEQRES 18 G 480 THR VAL GLN CYS THR HIS GLY ILE LYS PRO VAL VAL SER SEQRES 19 G 480 THR GLN LEU LEU LEU ASN GLY SER LEU ALA GLU GLU GLU SEQRES 20 G 480 VAL VAL ILE ARG PHE GLU ASN LEU THR ASN ASN ALA LYS SEQRES 21 G 480 ILE ILE ILE VAL HIS LEU ASN GLU SER VAL GLU ILE ASN SEQRES 22 G 480 CYS THR ARG PRO SER ASN ASN THR ARG LYS SER VAL ARG SEQRES 23 G 480 ILE GLY PRO GLY GLN THR PHE PHE ALA THR GLY ASP ILE SEQRES 24 G 480 ILE GLY ASP ILE ARG GLN ALA HIS CYS ASN ILE SER ARG SEQRES 25 G 480 LYS LYS TRP ASN THR THR LEU GLN ARG VAL LYS GLU LYS SEQRES 26 G 480 LEU LYS GLU LYS PHE PRO ASN LYS THR ILE GLN PHE ALA SEQRES 27 G 480 PRO SER SER GLY GLY ASP LEU GLU ILE THR THR HIS SER SEQRES 28 G 480 PHE ASN CYS ARG GLY GLU PHE PHE TYR CYS TYR THR SER SEQRES 29 G 480 ASP LEU PHE ASN SER THR TYR MET SER ASN ASN THR GLY SEQRES 30 G 480 GLY ALA ASN ILE THR LEU GLN CYS ARG ILE LYS GLN ILE SEQRES 31 G 480 ILE ARG MET TRP GLN GLY VAL GLY GLN ALA MET TYR ALA SEQRES 32 G 480 PRO PRO ILE ALA GLY ASN ILE THR CYS LYS SER ASN ILE SEQRES 33 G 480 THR GLY LEU LEU LEU THR ARG ASP GLY GLY LYS GLU LYS SEQRES 34 G 480 ASN ASP THR GLU THR PHE ARG PRO GLY GLY GLY ASP MET SEQRES 35 G 480 ARG ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL SEQRES 36 G 480 VAL GLU ILE LYS PRO LEU GLY ILE ALA PRO ASP LYS CYS SEQRES 37 G 480 LYS ARG ARG VAL VAL GLU ARG ARG ARG ARG ARG ARG SEQRES 1 T 140 ALA VAL GLY ILE GLY ALA VAL PHE LEU GLY PHE LEU GLY SEQRES 2 T 140 ALA ALA GLY SER THR MET GLY ALA ALA SER MET THR LEU SEQRES 3 T 140 THR VAL GLN ALA ARG GLN LEU LEU SER GLY ASN PHE ASP SEQRES 4 T 140 ILE PRO GLY PRO LYS THR VAL TRP GLY ILE LYS GLN LEU SEQRES 5 T 140 GLN THR ARG VAL LEU ALA ILE GLU ARG TYR LEU LYS ASP SEQRES 6 T 140 GLN GLN LEU LEU GLY ILE TRP GLY CYS SER GLY LYS LEU SEQRES 7 T 140 ILE CYS CYS THR ALA VAL PRO TRP ASN ALA SER TRP SER SEQRES 8 T 140 ASN LYS SER TYR GLU GLU ILE TRP GLY ASN MET THR TRP SEQRES 9 T 140 MET GLN TRP ASP ARG GLU ILE ASN ASN TYR THR ASN THR SEQRES 10 T 140 ILE TYR SER LEU LEU GLU GLU SER GLN ASN GLN GLN GLU SEQRES 11 T 140 LYS ASN GLU LYS ASP LEU LEU ALA LEU ASP SEQRES 1 L 214 SER TYR VAL SER PRO LEU SER VAL ALA LEU GLY GLU THR SEQRES 2 L 214 ALA ARG ILE SER CYS GLY ARG GLN ALA LEU GLY SER ARG SEQRES 3 L 214 ALA VAL GLN TRP TYR GLN HIS LYS PRO GLY GLN ALA PRO SEQRES 4 L 214 ILE LEU LEU ILE TYR ASN ASN GLN ASP ARG PRO SER GLY SEQRES 5 L 214 ILE PRO GLU ARG PHE SER GLY THR PRO ASP ILE ASN PHE SEQRES 6 L 214 GLY THR THR ALA THR LEU THR ILE SER GLY VAL GLU VAL SEQRES 7 L 214 GLY ASP GLU ALA ASP TYR TYR CYS HIS MET TRP ASP SER SEQRES 8 L 214 ARG SER GLY PHE SER TRP SER PHE GLY GLY ALA THR ARG SEQRES 9 L 214 LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 214 THR PRO GLU GLN TRP LYS SER HIS LYS SER TYR SER CYS SEQRES 16 L 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 214 ALA PRO THR GLU CYS SER SEQRES 1 H 236 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL ARG SEQRES 2 H 236 PRO SER GLU THR LEU SER VAL THR CYS ILE VAL SER GLY SEQRES 3 H 236 GLY SER ILE SER ASN TYR TYR TRP THR TRP ILE ARG GLN SEQRES 4 H 236 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SER SEQRES 5 H 236 ASP ARG GLU THR THR THR TYR ASN PRO SER LEU ASN SER SEQRES 6 H 236 ARG ALA VAL ILE SER ARG ASP THR SER LYS ASN GLN LEU SEQRES 7 H 236 SER LEU GLN LEU ARG SER VAL THR THR ALA ASP THR ALA SEQRES 8 H 236 ILE TYR PHE CYS ALA THR ALA ARG ARG GLY GLN ARG ILE SEQRES 9 H 236 TYR GLY VAL VAL SER PHE GLY GLU PHE PHE TYR TYR TYR SEQRES 10 H 236 TYR MET ASP VAL TRP GLY LYS GLY THR ALA VAL THR VAL SEQRES 11 H 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 236 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 236 CYS ASP HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET MAN B 8 11 HET MAN B 9 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG I 1 14 HET NAG I 2 14 HET BMA I 3 11 HET MAN I 4 11 HET MAN I 5 11 HET MAN I 6 11 HET MAN I 7 11 HET MAN I 8 11 HET MAN I 9 11 HET NAG J 1 14 HET NAG J 2 14 HET BMA J 3 11 HET MAN J 4 11 HET MAN J 5 11 HET NAG K 1 14 HET NAG K 2 14 HET NAG K 3 14 HET BMA K 4 11 HET MAN K 5 11 HET NAG K 6 14 HET NAG M 1 14 HET NAG M 2 14 HET BMA M 3 11 HET NAG N 1 14 HET NAG N 2 14 HET NAG O 1 14 HET NAG O 2 14 HET BMA O 3 11 HET NAG P 1 14 HET NAG P 2 14 HET BMA P 3 11 HET NAG G 601 14 HET NAG G 602 14 HET NAG G 603 14 HET NAG G 604 14 HET NAG G 605 14 HET NAG G 606 14 HET NAG G 607 14 HET NAG T 701 14 HET NAG T 702 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 7 NAG 33(C8 H15 N O6) FORMUL 7 BMA 8(C6 H12 O6) FORMUL 7 MAN 15(C6 H12 O6) HELIX 1 AA1 ASP A 235 VAL A 240 1 6 HELIX 2 AA2 ARG E 80 GLU E 84 5 5 HELIX 3 AA3 SER E 124 GLN E 129 1 6 HELIX 4 AA4 THR E 184 SER E 190 1 7 HELIX 5 AA5 ASN G 98 LEU G 116 1 19 HELIX 6 AA6 LEU G 122 CYS G 126 5 5 HELIX 7 AA7 ASN G 195 ASN G 197 5 3 HELIX 8 AA8 SER G 334 LYS G 350 1 17 HELIX 9 AA9 SER G 396 GLY G 400 5 5 HELIX 10 AB1 MET G 475 TYR G 484 1 10 HELIX 11 AB2 LEU T 523 GLY T 527 5 5 HELIX 12 AB3 THR T 529 MET T 535 1 7 HELIX 13 AB4 THR T 538 GLN T 543 1 6 HELIX 14 AB5 TRP T 571 TRP T 596 1 26 HELIX 15 AB6 THR T 627 GLU T 634 1 8 HELIX 16 AB7 TYR T 638 LEU T 646 1 9 HELIX 17 AB8 GLN T 650 LEU T 661 1 12 HELIX 18 AB9 GLU L 76 GLU L 80 5 5 HELIX 19 AC1 SER L 122 GLN L 127 1 6 HELIX 20 AC2 THR L 182 LYS L 187 1 6 HELIX 21 AC3 PRO H 61 ASN H 64 5 4 HELIX 22 AC4 THR H 83 THR H 87 5 5 HELIX 23 AC5 VAL H 100D GLY H 100H 5 5 HELIX 24 AC6 PRO H 183 LEU H 187 5 5 SHEET 1 AA1 4 LEU A 4 GLN A 6 0 SHEET 2 AA1 4 SER A 17 THR A 24 -1 O LYS A 23 N VAL A 5 SHEET 3 AA1 4 SER A 83 ARG A 92 -1 O MET A 89 N ILE A 20 SHEET 4 AA1 4 VAL A 68 PRO A 77 -1 N ASP A 73 O ALA A 86 SHEET 1 AA2 6 GLU A 10 LYS A 12 0 SHEET 2 AA2 6 THR A 125 VAL A 129 1 O THR A 128 N GLU A 10 SHEET 3 AA2 6 GLY A 100 LYS A 106 -1 N TYR A 102 O THR A 125 SHEET 4 AA2 6 ILE A 34 THR A 40 -1 N ASN A 35 O ALA A 105 SHEET 5 AA2 6 GLY A 44 ILE A 51 -1 O ILE A 51 N ILE A 34 SHEET 6 AA2 6 LYS A 58 LEU A 60 -1 O ASN A 59 N TRP A 50 SHEET 1 AA3 4 GLU A 10 LYS A 12 0 SHEET 2 AA3 4 THR A 125 VAL A 129 1 O THR A 128 N GLU A 10 SHEET 3 AA3 4 GLY A 100 LYS A 106 -1 N TYR A 102 O THR A 125 SHEET 4 AA3 4 LEU A 120 TRP A 121 -1 O LEU A 120 N LYS A 106 SHEET 1 AA4 3 SER A 138 PRO A 141 0 SHEET 2 AA4 3 THR A 153 TYR A 163 -1 O LEU A 159 N PHE A 140 SHEET 3 AA4 3 SER A 145 SER A 148 -1 N LYS A 147 O THR A 153 SHEET 1 AA5 4 SER A 138 PRO A 141 0 SHEET 2 AA5 4 THR A 153 TYR A 163 -1 O LEU A 159 N PHE A 140 SHEET 3 AA5 4 TYR A 194 PRO A 203 -1 O VAL A 200 N LEU A 156 SHEET 4 AA5 4 VAL A 181 THR A 183 -1 N HIS A 182 O VAL A 199 SHEET 1 AA6 3 THR A 169 TRP A 172 0 SHEET 2 AA6 3 ILE A 213 HIS A 218 -1 O ASN A 215 N SER A 171 SHEET 3 AA6 3 THR A 223 ARG A 228 -1 O VAL A 225 N VAL A 216 SHEET 1 AA7 6 SER E 8 SER E 12 0 SHEET 2 AA7 6 THR E 104 LEU E 109 1 O LEU E 109 N GLY E 11 SHEET 3 AA7 6 THR E 86 TYR E 92 -1 N TYR E 87 O THR E 104 SHEET 4 AA7 6 SER E 33 TRP E 39 -1 N SER E 33 O TYR E 92 SHEET 5 AA7 6 THR E 46 TYR E 50 -1 O ILE E 49 N TRP E 36 SHEET 6 AA7 6 GLU E 54 ARG E 55 -1 O GLU E 54 N TYR E 50 SHEET 1 AA8 4 SER E 8 SER E 12 0 SHEET 2 AA8 4 THR E 104 LEU E 109 1 O LEU E 109 N GLY E 11 SHEET 3 AA8 4 THR E 86 TYR E 92 -1 N TYR E 87 O THR E 104 SHEET 4 AA8 4 VAL E 99 PHE E 100 -1 O VAL E 99 N SER E 91 SHEET 1 AA9 3 VAL E 17 CYS E 21 0 SHEET 2 AA9 3 ALA E 72 ILE E 76 -1 O ALA E 72 N CYS E 21 SHEET 3 AA9 3 PHE E 63 LYS E 67 -1 N TYR E 66 O TYR E 73 SHEET 1 AB1 4 SER E 117 PHE E 121 0 SHEET 2 AB1 4 ALA E 133 PHE E 142 -1 O SER E 140 N SER E 117 SHEET 3 AB1 4 TYR E 175 LEU E 183 -1 O SER E 179 N CYS E 137 SHEET 4 AB1 4 VAL E 162 THR E 164 -1 N GLU E 163 O TYR E 180 SHEET 1 AB2 4 SER E 117 PHE E 121 0 SHEET 2 AB2 4 ALA E 133 PHE E 142 -1 O SER E 140 N SER E 117 SHEET 3 AB2 4 TYR E 175 LEU E 183 -1 O SER E 179 N CYS E 137 SHEET 4 AB2 4 SER E 168 LYS E 169 -1 N SER E 168 O ALA E 176 SHEET 1 AB3 3 THR E 148 ALA E 153 0 SHEET 2 AB3 3 TYR E 194 THR E 199 -1 O THR E 199 N THR E 148 SHEET 3 AB3 3 THR E 204 VAL E 209 -1 O VAL E 205 N VAL E 198 SHEET 1 AB4 3 LEU G 494 ASP G 499 0 SHEET 2 AB4 3 TRP G 35 TYR G 40 -1 N TYR G 39 O GLY G 495 SHEET 3 AB4 3 ILE T 603 PRO T 609 -1 O VAL T 608 N VAL G 36 SHEET 1 AB5 5 TRP G 45 GLU G 47 0 SHEET 2 AB5 5 TYR G 486 ILE G 491 -1 O GLU G 490 N LYS G 46 SHEET 3 AB5 5 TYR G 223 CYS G 228 -1 N LEU G 226 O LYS G 487 SHEET 4 AB5 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 AB5 5 ILE G 84 LEU G 86 -1 N LEU G 86 O VAL G 242 SHEET 1 AB6 2 GLU G 91 ASN G 94 0 SHEET 2 AB6 2 THR G 236 CYS G 239 -1 O CYS G 239 N GLU G 91 SHEET 1 AB7 3 THR G 128 LEU G 129 0 SHEET 2 AB7 3 TYR G 191 LEU G 193 -1 O TYR G 191 N LEU G 129 SHEET 3 AB7 3 ASP G 180 VAL G 181 -1 N VAL G 181 O ARG G 192 SHEET 1 AB8 2 ASN G 156 THR G 162 0 SHEET 2 AB8 2 LYS G 169 LEU G 175 -1 O ALA G 174 N CYS G 157 SHEET 1 AB9 3 THR G 202 GLN G 203 0 SHEET 2 AB9 3 MET G 434 TYR G 435 1 O TYR G 435 N THR G 202 SHEET 3 AB9 3 ILE G 423 ILE G 424 -1 N ILE G 424 O MET G 434 SHEET 1 AC1 5 LEU G 259 LEU G 261 0 SHEET 2 AC1 5 ILE G 443 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 AC1 5 ILE G 284 ARG G 298 -1 N VAL G 292 O ILE G 449 SHEET 4 AC1 5 THR G 465 PRO G 470 0 SHEET 5 AC1 5 THR G 357 GLN G 359 1 N GLN G 359 O GLU G 466 SHEET 1 AC2 7 VAL G 271 PHE G 274 0 SHEET 2 AC2 7 ILE G 284 ARG G 298 -1 O HIS G 287 N VAL G 271 SHEET 3 AC2 7 ILE G 443 ARG G 456 -1 O ILE G 449 N VAL G 292 SHEET 4 AC2 7 ALA G 329 ASN G 332 0 SHEET 5 AC2 7 THR G 415 LYS G 421 -1 O LEU G 416 N CYS G 331 SHEET 6 AC2 7 PHE G 381 CYS G 384 -1 N TYR G 383 O ARG G 419 SHEET 7 AC2 7 HIS G 373 SER G 374 -1 N HIS G 373 O CYS G 384 SHEET 1 AC3 2 ARG G 304 ARG G 308 0 SHEET 2 AC3 2 THR G 316 THR G 320 -1 O ALA G 319 N LYS G 305 SHEET 1 AC4 5 LEU L 5 VAL L 7 0 SHEET 2 AC4 5 THR L 102 VAL L 106 1 O THR L 105 N LEU L 5 SHEET 3 AC4 5 ASP L 82 HIS L 86 -1 N TYR L 83 O THR L 102 SHEET 4 AC4 5 GLN L 28 HIS L 32 -1 N HIS L 32 O ASP L 82 SHEET 5 AC4 5 ILE L 39 ILE L 42 -1 O ILE L 39 N GLN L 31 SHEET 1 AC5 3 ALA L 13 SER L 16 0 SHEET 2 AC5 3 THR L 69 ILE L 72 -1 O ILE L 72 N ALA L 13 SHEET 3 AC5 3 PHE L 56 GLY L 58 -1 N SER L 57 O THR L 71 SHEET 1 AC6 4 SER L 115 PHE L 119 0 SHEET 2 AC6 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AC6 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AC6 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AC7 4 SER L 115 PHE L 119 0 SHEET 2 AC7 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AC7 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AC7 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AC8 4 PRO L 155 VAL L 156 0 SHEET 2 AC8 4 VAL L 145 ALA L 151 -1 N TRP L 149 O VAL L 156 SHEET 3 AC8 4 TYR L 192 HIS L 198 -1 O SER L 193 N LYS L 150 SHEET 4 AC8 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 AC9 4 GLN H 3 SER H 7 0 SHEET 2 AC9 4 THR H 17 SER H 25 -1 O ILE H 23 N GLN H 5 SHEET 3 AC9 4 GLN H 77 ARG H 82A-1 O LEU H 80 N VAL H 20 SHEET 4 AC9 4 ALA H 67 ASP H 72 -1 N VAL H 68 O GLN H 81 SHEET 1 AD1 6 LEU H 11 VAL H 12 0 SHEET 2 AD1 6 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AD1 6 ALA H 88 ALA H 95 -1 N TYR H 90 O THR H 105 SHEET 4 AD1 6 TYR H 33 GLN H 39 -1 N ILE H 37 O PHE H 91 SHEET 5 AD1 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AD1 6 THR H 57 TYR H 59 -1 O THR H 58 N TYR H 50 SHEET 1 AD2 2 GLN H 99 ILE H 100A 0 SHEET 2 AD2 2 PHE H 100J TYR H 100L-1 O PHE H 100K N ARG H 100 SHEET 1 AD3 4 VAL H 119 LEU H 122 0 SHEET 2 AD3 4 LEU H 136 TYR H 143 -1 O LEU H 139 N PHE H 120 SHEET 3 AD3 4 TYR H 174 VAL H 180 -1 O TYR H 174 N TYR H 143 SHEET 4 AD3 4 HIS H 162 THR H 163 -1 N HIS H 162 O VAL H 179 SHEET 1 AD4 4 VAL H 119 LEU H 122 0 SHEET 2 AD4 4 LEU H 136 TYR H 143 -1 O LEU H 139 N PHE H 120 SHEET 3 AD4 4 TYR H 174 VAL H 180 -1 O TYR H 174 N TYR H 143 SHEET 4 AD4 4 VAL H 167 LEU H 168 -1 N VAL H 167 O SER H 175 SHEET 1 AD5 3 THR H 149 TRP H 152 0 SHEET 2 AD5 3 ILE H 193 ASN H 197 -1 O ASN H 197 N THR H 149 SHEET 3 AD5 3 VAL H 205 LYS H 208 -1 O LYS H 207 N CYS H 194 SSBOND 1 CYS A 22 CYS A 104 1555 1555 2.04 SSBOND 2 CYS A 158 CYS A 214 1555 1555 2.03 SSBOND 3 CYS E 21 CYS E 89 1555 1555 2.04 SSBOND 4 CYS E 28 CYS E 29 1555 1555 2.04 SSBOND 5 CYS E 90 CYS E 98 1555 1555 2.03 SSBOND 6 CYS E 137 CYS E 196 1555 1555 2.04 SSBOND 7 CYS G 54 CYS G 74 1555 1555 2.03 SSBOND 8 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 9 CYS G 126 CYS G 196 1555 1555 2.03 SSBOND 10 CYS G 131 CYS G 157 1555 1555 2.03 SSBOND 11 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 12 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 13 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 14 CYS G 377 CYS G 445 1555 1555 2.03 SSBOND 15 CYS G 384 CYS G 418 1555 1555 2.03 SSBOND 16 CYS G 501 CYS T 605 1555 1555 2.04 SSBOND 17 CYS T 598 CYS T 604 1555 1555 2.03 SSBOND 18 CYS L 17 CYS L 85 1555 1555 2.03 SSBOND 19 CYS L 135 CYS L 194 1555 1555 2.04 SSBOND 20 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 21 CYS H 138 CYS H 194 1555 1555 2.03 LINK ND2 ASN G 88 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN G 130 C1 NAG G 601 1555 1555 1.44 LINK ND2 ASN G 156 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN G 160 C1 NAG G 605 1555 1555 1.44 LINK ND2 ASN G 197 C1 NAG O 1 1555 1555 1.43 LINK ND2 ASN G 230 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN G 234 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN G 241 C1 NAG N 1 1555 1555 1.44 LINK ND2 ASN G 262 C1 NAG K 2 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG G 606 1555 1555 1.44 LINK ND2 ASN G 289 C1 NAG M 1 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG J 1 1555 1555 1.44 LINK ND2 ASN G 301 C1 NAG G 604 1555 1555 1.44 LINK ND2 ASN G 332 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN G 391 C1 NAG G 607 1555 1555 1.44 LINK ND2 ASN G 413 C1 NAG G 602 1555 1555 1.44 LINK ND2 ASN G 442 C1 NAG G 603 1555 1555 1.45 LINK ND2 ASN G 448 C1 NAG K 1 1555 1555 1.44 LINK ND2 ASN T 611 C1 NAG T 701 1555 1555 1.44 LINK ND2 ASN T 625 C1 NAG P 1 1555 1555 1.44 LINK ND2 ASN T 637 C1 NAG T 702 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.37 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.37 LINK O3 BMA B 3 C1 MAN B 8 1555 1555 1.37 LINK O6 MAN B 4 C1 MAN B 5 1555 1555 1.37 LINK O3 MAN B 4 C1 MAN B 7 1555 1555 1.37 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.37 LINK O2 MAN B 8 C1 MAN B 9 1555 1555 1.37 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.37 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.37 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.37 LINK O4 NAG I 2 C1 BMA I 3 1555 1555 1.37 LINK O3 BMA I 3 C1 MAN I 4 1555 1555 1.37 LINK O6 BMA I 3 C1 MAN I 7 1555 1555 1.37 LINK O2 MAN I 4 C1 MAN I 5 1555 1555 1.37 LINK O2 MAN I 5 C1 MAN I 6 1555 1555 1.37 LINK O3 MAN I 7 C1 MAN I 8 1555 1555 1.37 LINK O6 MAN I 7 C1 MAN I 9 1555 1555 1.37 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.37 LINK O4 NAG J 2 C1 BMA J 3 1555 1555 1.37 LINK O3 BMA J 3 C1 MAN J 4 1555 1555 1.38 LINK O6 BMA J 3 C1 MAN J 5 1555 1555 1.38 LINK C8 NAG K 1 O6 NAG K 2 1555 1555 1.37 LINK O4 NAG K 1 C1 NAG K 6 1555 1555 1.37 LINK O4 NAG K 2 C1 NAG K 3 1555 1555 1.38 LINK O4 NAG K 3 C1 BMA K 4 1555 1555 1.38 LINK O3 BMA K 4 C1 MAN K 5 1555 1555 1.37 LINK O4 NAG M 1 C1 NAG M 2 1555 1555 1.38 LINK O4 NAG M 2 C1 BMA M 3 1555 1555 1.37 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.38 LINK O4 NAG O 1 C1 NAG O 2 1555 1555 1.37 LINK O4 NAG O 2 C1 BMA O 3 1555 1555 1.37 LINK O4 NAG P 1 C1 NAG P 2 1555 1555 1.37 LINK O4 NAG P 2 C1 BMA P 3 1555 1555 1.37 CISPEP 1 TYR L 141 PRO L 142 0 -1.72 CISPEP 2 PHE H 144 PRO H 145 0 -5.63 CISPEP 3 GLU H 146 PRO H 147 0 -1.91 CRYST1 127.016 127.016 316.538 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007873 0.004545 0.000000 0.00000 SCALE2 0.000000 0.009091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003159 0.00000