HEADER PTERIN BINDING PROTEIN 09-NOV-20 7KOM TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF PUTATIVE PTERIN BINDING PROTEIN TITLE 2 PRUR (VV2_1280) FROM VIBRIO VULNIFICUS CMCP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDORED_MOLYB DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS (STRAIN CMCP6); SOURCE 3 ORGANISM_TAXID: 216895; SOURCE 4 STRAIN: CMCP6; SOURCE 5 GENE: VV2_1280; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, PTERIN BINDING, PTERIN, UNKNOWN FUNCTION, PTERIN KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,I.DUBROVSKA,M.ENDRES, AUTHOR 2 K.J.F.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 1 17-NOV-21 7KOM 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,I.DUBROVSKA,M.ENDRES, JRNL AUTH 2 K.J.F.SATCHELL, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF PUTATIVE PTERIN BINDING JRNL TITL 2 PROTEIN PRUR (VV2_1280) FROM VIBRIO VULNIFICUS CMCP6. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 62187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3176 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4069 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1097 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.013 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1447 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1314 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2004 ; 1.530 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3084 ; 1.389 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 191 ; 4.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;31.417 ;22.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 238 ; 9.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.304 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 183 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1737 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 309 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2759 ; 9.196 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2972 18.4031 41.8908 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0178 REMARK 3 T33: 0.0041 T12: 0.0022 REMARK 3 T13: -0.0056 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.7399 L22: 0.6736 REMARK 3 L33: 0.4673 L12: 0.3396 REMARK 3 L13: -0.2154 L23: -0.0769 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.0011 S13: -0.0278 REMARK 3 S21: 0.0236 S22: -0.0092 S23: -0.0166 REMARK 3 S31: 0.0307 S32: -0.0039 S33: 0.0213 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5010 11.6604 42.7019 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.0193 REMARK 3 T33: 0.0250 T12: -0.0068 REMARK 3 T13: -0.0078 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.9209 L22: 0.9577 REMARK 3 L33: 2.2548 L12: -0.0231 REMARK 3 L13: 0.6232 L23: 0.6881 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: -0.0367 S13: -0.1271 REMARK 3 S21: 0.0977 S22: 0.0088 S23: -0.0181 REMARK 3 S31: 0.1967 S32: -0.0446 S33: -0.0547 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4074 22.8454 38.5822 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0115 REMARK 3 T33: 0.0015 T12: -0.0016 REMARK 3 T13: -0.0026 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.8243 L22: 0.2535 REMARK 3 L33: 0.1363 L12: 0.0160 REMARK 3 L13: 0.0372 L23: 0.1535 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.0146 S13: 0.0130 REMARK 3 S21: -0.0045 S22: 0.0072 S23: -0.0044 REMARK 3 S31: -0.0096 S32: 0.0107 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4190 8.6351 38.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: 0.0123 REMARK 3 T33: 0.0228 T12: -0.0008 REMARK 3 T13: 0.0026 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 4.5041 L22: 4.3649 REMARK 3 L33: 3.2879 L12: -2.5765 REMARK 3 L13: 3.1815 L23: -2.1068 REMARK 3 S TENSOR REMARK 3 S11: 0.1024 S12: -0.0237 S13: -0.2086 REMARK 3 S21: -0.0175 S22: -0.0307 S23: -0.0131 REMARK 3 S31: 0.1278 S32: -0.0049 S33: -0.0717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7KOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND (C111) REMARK 200 OPTICS : BE REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65367 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 45.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.67900 REMARK 200 R SYM FOR SHELL (I) : 0.67900 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.2 MG/ML, 0.5M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS HCL (PH 8.3); SCREEN: CLASSICS II (A7), REMARK 280 0.1M CITRIC ACID (PH 3.5), 3.0M SODIUM CHLORIDE. CRYO: 4.0M REMARK 280 FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 16.52300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.54350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.17950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 16.52300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.54350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.17950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 16.52300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.54350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.17950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 16.52300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.54350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.17950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 320 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 16 REMARK 465 ASN A 17 REMARK 465 ALA A 18 REMARK 465 LYS A 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 116 -100.69 -102.22 REMARK 500 ASP A 116 -103.55 -102.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 140 OG REMARK 620 2 HOH A 324 O 91.5 REMARK 620 3 HOH A 367 O 94.9 81.1 REMARK 620 4 HOH A 373 O 85.5 164.5 84.0 REMARK 620 5 HOH A 440 O 82.3 97.0 176.6 97.6 REMARK 620 6 HOH A 499 O 170.2 90.9 94.9 94.7 87.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97031 RELATED DB: TARGETTRACK DBREF1 7KOM A 19 153 UNP A0A3Q0L063_VIBVU DBREF2 7KOM A A0A3Q0L063 19 153 SEQADV 7KOM SER A 16 UNP A0A3Q0L06 EXPRESSION TAG SEQADV 7KOM ASN A 17 UNP A0A3Q0L06 EXPRESSION TAG SEQADV 7KOM ALA A 18 UNP A0A3Q0L06 EXPRESSION TAG SEQRES 1 A 138 SER ASN ALA TYR ASN LEU GLN MSE ASP ILE PRO HIS ALA SEQRES 2 A 138 PRO THR VAL VAL LEU THR VAL GLN ASP LEU GLU GLN MSE SEQRES 3 A 138 GLU ALA THR GLN TYR THR THR MSE LEU PRO TRP LEU SER SEQRES 4 A 138 ALA PRO ALA THR PHE THR GLY VAL LYS LEU SER THR LEU SEQRES 5 A 138 LEU SER GLN GLN TYR GLY PHE ILE PRO ASN ARG VAL THR SEQRES 6 A 138 LEU ARG ALA LEU ASN ASP TYR ALA ALA ASP ILE ASP LEU SEQRES 7 A 138 SER ASP ILE GLU LYS TYR GLN PRO ILE VAL ALA TYR ARG SEQRES 8 A 138 GLN ASP GLY LYS PRO MSE ARG VAL ARG ASP LYS GLY PRO SEQRES 9 A 138 PHE TRP LEU ILE TYR PRO GLN SER SER PHE PRO LYS GLU SEQRES 10 A 138 LEU ASN ASN GLU ARG TYR HIS SER GLN MSE VAL TRP GLN SEQRES 11 A 138 LEU LYS GLN ILE HIS ILE ALA LYS MODRES 7KOM MSE A 23 MET MODIFIED RESIDUE MODRES 7KOM MSE A 41 MET MODIFIED RESIDUE MODRES 7KOM MSE A 49 MET MODIFIED RESIDUE MODRES 7KOM MSE A 112 MET MODIFIED RESIDUE MODRES 7KOM MSE A 142 MET MODIFIED RESIDUE HET MSE A 23 16 HET MSE A 41 8 HET MSE A 49 8 HET MSE A 112 8 HET MSE A 142 8 HET FMT A 201 3 HET FMT A 202 3 HET NA A 203 1 HETNAM MSE SELENOMETHIONINE HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 FMT 2(C H2 O2) FORMUL 4 NA NA 1+ FORMUL 5 HOH *207(H2 O) HELIX 1 AA1 THR A 34 GLN A 40 1 7 HELIX 2 AA2 LEU A 64 GLY A 73 1 10 HELIX 3 AA3 LEU A 93 GLN A 100 1 8 HELIX 4 AA4 PRO A 125 SER A 128 5 4 HELIX 5 AA5 PHE A 129 ASN A 134 1 6 HELIX 6 AA6 ASN A 135 SER A 140 1 6 SHEET 1 AA1 5 VAL A 31 LEU A 33 0 SHEET 2 AA1 5 LEU A 21 MSE A 23 -1 N MSE A 23 O VAL A 31 SHEET 3 AA1 5 LEU A 146 ILE A 151 1 O LYS A 147 N GLN A 22 SHEET 4 AA1 5 ARG A 78 ALA A 83 -1 N THR A 80 O HIS A 150 SHEET 5 AA1 5 ALA A 88 ASP A 92 -1 O ALA A 89 N LEU A 81 SHEET 1 AA2 4 THR A 44 THR A 48 0 SHEET 2 AA2 4 ALA A 57 LYS A 63 -1 O PHE A 59 N TYR A 46 SHEET 3 AA2 4 ILE A 102 GLN A 107 -1 O VAL A 103 N VAL A 62 SHEET 4 AA2 4 TRP A 121 ILE A 123 -1 O ILE A 123 N ILE A 102 LINK C AGLN A 22 N AMSE A 23 1555 1555 1.34 LINK C BGLN A 22 N BMSE A 23 1555 1555 1.34 LINK C AMSE A 23 N ASP A 24 1555 1555 1.33 LINK C BMSE A 23 N ASP A 24 1555 1555 1.34 LINK C AGLN A 40 N MSE A 41 1555 1555 1.34 LINK C BGLN A 40 N MSE A 41 1555 1555 1.34 LINK C MSE A 41 N GLU A 42 1555 1555 1.34 LINK C THR A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N LEU A 50 1555 1555 1.34 LINK C APRO A 111 N MSE A 112 1555 1555 1.34 LINK C BPRO A 111 N MSE A 112 1555 1555 1.34 LINK C MSE A 112 N AARG A 113 1555 1555 1.34 LINK C MSE A 112 N BARG A 113 1555 1555 1.34 LINK C GLN A 141 N MSE A 142 1555 1555 1.34 LINK C MSE A 142 N VAL A 143 1555 1555 1.34 LINK OG ASER A 140 NA A NA A 203 1555 1555 2.36 LINK NA A NA A 203 O HOH A 324 1555 1555 2.42 LINK NA A NA A 203 O HOH A 367 1555 1555 2.46 LINK NA A NA A 203 O HOH A 373 1555 1555 2.39 LINK NA A NA A 203 O HOH A 440 1555 1555 2.36 LINK NA A NA A 203 O HOH A 499 1555 1555 2.38 CISPEP 1 GLY A 118 PRO A 119 0 -1.56 CRYST1 33.046 71.087 106.359 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009402 0.00000