HEADER VIRAL PROTEIN, HYDROLASE 09-NOV-20 7KOP TITLE THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA ENDONUCLEASE I38T TITLE 2 MUTANT IN COMPLEX WITH SJ000988539 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 GENE: PA-X, PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,J.SEETHARAMAN,S.W.WHITE REVDAT 3 18-OCT-23 7KOP 1 REMARK REVDAT 2 11-OCT-23 7KOP 1 JRNL REVDAT 1 10-NOV-21 7KOP 0 JRNL AUTH M.G.CUYPERS,P.J.SLAVISH,J.SEETHARAMAN,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA JRNL TITL 2 ENDONUCLEASE I38T MUTANT IN COMPLEX WITH SJ000988539 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 11597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6800 - 3.7000 0.96 2815 151 0.1796 0.1937 REMARK 3 2 3.7000 - 2.9400 0.98 2743 145 0.2186 0.2545 REMARK 3 3 2.9400 - 2.5600 0.99 2728 137 0.2600 0.2801 REMARK 3 4 2.5600 - 2.3300 0.99 2713 165 0.2747 0.2928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.255 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.886 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1599 REMARK 3 ANGLE : 0.567 2158 REMARK 3 CHIRALITY : 0.039 225 REMARK 3 PLANARITY : 0.003 273 REMARK 3 DIHEDRAL : 13.216 230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1764 21.2155 3.3232 REMARK 3 T TENSOR REMARK 3 T11: 0.6883 T22: 0.6088 REMARK 3 T33: 0.5446 T12: -0.1039 REMARK 3 T13: -0.1899 T23: 0.1088 REMARK 3 L TENSOR REMARK 3 L11: 2.0849 L22: 7.6499 REMARK 3 L33: 2.2118 L12: 0.3276 REMARK 3 L13: -0.5684 L23: 1.0180 REMARK 3 S TENSOR REMARK 3 S11: 0.2197 S12: 1.0014 S13: 0.3250 REMARK 3 S21: -0.2813 S22: -0.1924 S23: -0.2193 REMARK 3 S31: -0.6320 S32: 0.1591 S33: 0.0202 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2634 27.0473 4.1446 REMARK 3 T TENSOR REMARK 3 T11: 0.7446 T22: 0.5778 REMARK 3 T33: 0.5598 T12: 0.0797 REMARK 3 T13: -0.1998 T23: 0.1061 REMARK 3 L TENSOR REMARK 3 L11: 9.2041 L22: 7.6485 REMARK 3 L33: 6.5730 L12: -0.9061 REMARK 3 L13: -1.8004 L23: -0.8160 REMARK 3 S TENSOR REMARK 3 S11: 0.3805 S12: 1.1270 S13: 0.8506 REMARK 3 S21: -0.2773 S22: -0.4684 S23: 0.1422 REMARK 3 S31: -1.0408 S32: -1.0454 S33: 0.0415 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7013 19.7509 16.3748 REMARK 3 T TENSOR REMARK 3 T11: 0.4784 T22: 0.4078 REMARK 3 T33: 0.4744 T12: -0.0714 REMARK 3 T13: -0.2007 T23: -0.1236 REMARK 3 L TENSOR REMARK 3 L11: 4.3500 L22: 1.3783 REMARK 3 L33: 4.7313 L12: -1.0393 REMARK 3 L13: -1.3882 L23: -1.8310 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0782 S13: -0.3788 REMARK 3 S21: 0.0805 S22: -0.1189 S23: -0.0505 REMARK 3 S31: 0.0905 S32: -0.6057 S33: 0.1367 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8832 25.6369 22.8165 REMARK 3 T TENSOR REMARK 3 T11: 0.6704 T22: 0.5435 REMARK 3 T33: 0.5015 T12: -0.0113 REMARK 3 T13: -0.1820 T23: -0.2375 REMARK 3 L TENSOR REMARK 3 L11: 3.1301 L22: 2.8302 REMARK 3 L33: 2.5560 L12: -0.0632 REMARK 3 L13: -0.5742 L23: 0.8773 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.7237 S13: 0.5877 REMARK 3 S21: 0.4992 S22: -0.3392 S23: 0.1185 REMARK 3 S31: -0.5890 S32: -0.1582 S33: 0.2518 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7500 34.0673 26.9683 REMARK 3 T TENSOR REMARK 3 T11: 1.5575 T22: 0.7989 REMARK 3 T33: 0.5852 T12: -0.2909 REMARK 3 T13: -0.1822 T23: -0.2033 REMARK 3 L TENSOR REMARK 3 L11: 6.5137 L22: 5.9897 REMARK 3 L33: 3.2166 L12: -3.8457 REMARK 3 L13: -0.5657 L23: 2.0492 REMARK 3 S TENSOR REMARK 3 S11: 0.4257 S12: -0.5800 S13: 0.4249 REMARK 3 S21: -0.2781 S22: 0.0714 S23: -0.7580 REMARK 3 S31: 0.2028 S32: -0.0444 S33: -0.4095 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3298 27.8751 28.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.6619 T22: 0.5417 REMARK 3 T33: 0.4047 T12: -0.2813 REMARK 3 T13: -0.2074 T23: -0.2615 REMARK 3 L TENSOR REMARK 3 L11: 3.7028 L22: 3.4732 REMARK 3 L33: 3.6516 L12: 0.7509 REMARK 3 L13: 0.2810 L23: -0.2556 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.4858 S13: 0.4578 REMARK 3 S21: 0.7378 S22: -0.2224 S23: -0.1484 REMARK 3 S31: 0.4671 S32: 0.1709 S33: -0.0324 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2646 19.0546 23.2183 REMARK 3 T TENSOR REMARK 3 T11: 0.6152 T22: 0.4650 REMARK 3 T33: 0.5284 T12: -0.1478 REMARK 3 T13: -0.2931 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 4.9670 L22: 1.7672 REMARK 3 L33: 4.7147 L12: -0.0515 REMARK 3 L13: -2.1148 L23: 0.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.0861 S12: -0.8036 S13: 0.0422 REMARK 3 S21: 0.2986 S22: -0.2157 S23: 0.0151 REMARK 3 S31: -0.2480 S32: 0.8533 S33: 0.2286 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9191 30.5273 12.8876 REMARK 3 T TENSOR REMARK 3 T11: 1.0320 T22: 0.6637 REMARK 3 T33: 0.9097 T12: -0.3098 REMARK 3 T13: -0.2171 T23: 0.1029 REMARK 3 L TENSOR REMARK 3 L11: 2.8530 L22: 8.0078 REMARK 3 L33: 3.4899 L12: 4.3533 REMARK 3 L13: 2.4573 L23: 4.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.1480 S12: -0.2546 S13: 1.3451 REMARK 3 S21: -0.0451 S22: 0.2091 S23: -0.9668 REMARK 3 S31: -2.0902 S32: 1.3237 S33: -0.6013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11600 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 45.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 0.1M MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.79700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.79700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.91300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.79700 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.79700 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 65.91300 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.79700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.79700 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 65.91300 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.79700 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.79700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 65.91300 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.79700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.79700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 65.91300 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.79700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.79700 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 65.91300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.79700 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.79700 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 65.91300 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.79700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.79700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.91300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -238.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -167.19 -111.83 REMARK 500 LYS A 139 -50.42 59.58 REMARK 500 ALA A 159 19.08 54.31 REMARK 500 THR A 162 -62.85 61.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 97.9 REMARK 620 3 GLU A 119 OE2 170.8 84.4 REMARK 620 4 ILE A 120 O 84.1 89.8 87.0 REMARK 620 5 WTM A 203 O13 105.2 106.1 82.5 159.9 REMARK 620 6 WTM A 203 O15 85.7 174.3 91.4 86.1 77.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 90.3 REMARK 620 3 WTM A 203 O10 100.5 162.7 REMARK 620 4 WTM A 203 O13 115.1 87.2 76.0 REMARK 620 5 HOH A 303 O 172.4 82.1 87.0 65.1 REMARK 620 6 HOH A 306 O 94.3 87.9 104.6 150.2 85.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7K87 RELATED DB: PDB DBREF1 7KOP A 1 50 UNP A0A4D6EED0_9INFA DBREF2 7KOP A A0A4D6EED0 1 50 DBREF 7KOP A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 7KOP MET A -19 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP GLY A -18 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP SER A -17 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP SER A -16 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP HIS A -15 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP HIS A -14 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP HIS A -13 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP HIS A -12 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP HIS A -11 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP HIS A -10 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP SER A -9 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP SER A -8 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP GLY A -7 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP LEU A -6 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP VAL A -5 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP PRO A -4 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP ARG A -3 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP GLY A -2 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP SER A -1 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP HIS A 0 UNP A0A4D6EED EXPRESSION TAG SEQADV 7KOP GLY A 51 UNP A0A4D6EED LINKER SEQADV 7KOP GLY A 52 UNP A0A4D6EED LINKER SEQADV 7KOP SER A 53 UNP A0A4D6EED LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET WTM A 203 28 HET QQ4 A 204 41 HET SO4 A 205 5 HETNAM MN MANGANESE (II) ION HETNAM WTM 2-(2-FLUOROPHENYL)-5-HYDROXY-N-[2-(2-METHOXYPYRIDIN-4- HETNAM 2 WTM YL)ETHYL]-6-OXO-1,6-DIHYDROPYRIMIDINE-4-CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 WTM C19 H17 F N4 O4 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *47(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 SER A 184 1 21 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.19 LINK OE2 GLU A 80 MN MN A 202 1555 1555 2.37 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.18 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.28 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.16 LINK O ILE A 120 MN MN A 201 1555 1555 2.14 LINK MN MN A 201 O13 WTM A 203 1555 1555 2.36 LINK MN MN A 201 O15 WTM A 203 1555 1555 2.04 LINK MN MN A 202 O10 WTM A 203 1555 1555 2.57 LINK MN MN A 202 O13 WTM A 203 1555 1555 2.19 LINK MN MN A 202 O HOH A 303 1555 1555 2.67 LINK MN MN A 202 O HOH A 306 1555 1555 2.46 CRYST1 89.594 89.594 131.826 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007586 0.00000