HEADER SIGNALING PROTEIN 11-NOV-20 7KPG TITLE BLOCKING FAB 25 ANTI-SIRP-ALPHA ANTIBODY IN COMPLEX WITH SIRP-ALPHA TITLE 2 VARIANT 1 CAVEAT 7KPG RESIDUES PRO H 130 AND GLY H 137 THAT ARE NEXT TO EACH OTHER CAVEAT 2 7KPG IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 7KPG BETWEEN C AND N IS 12.88. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF FAB 25 ANTI-SIRP-ALPHA ANTIBODY; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF FAB 25 ANTI-SIRP-ALPHA ANTIBODY; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE SUBSTRATE 1; COMPND 11 CHAIN: S; COMPND 12 SYNONYM: SHPS-1,BRAIN IG-LIKE MOLECULE WITH TYROSINE-BASED ACTIVATION COMPND 13 MOTIFS,BIT,CD172 ANTIGEN-LIKE FAMILY MEMBER A,INHIBITORY RECEPTOR COMPND 14 SHPS-1,MACROPHAGE FUSION RECEPTOR,MYD-1 ANTIGEN,SIGNAL-REGULATORY COMPND 15 PROTEIN ALPHA-1,SIRP-ALPHA-1,SIGNAL-REGULATORY PROTEIN ALPHA-2,SIRP- COMPND 16 ALPHA-2,SIGNAL-REGULATORY PROTEIN ALPHA-3,SIRP-ALPHA-3,P84; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: SIRPA, BIT, MFR, MYD1, PTPNS1, SHPS1, SIRP; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIRPA ANTIBODY COMPLEX, SIGNAL REGULATORY PROTEIN ALPHA VARIANT 1, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SIM,J.PONS REVDAT 2 18-OCT-23 7KPG 1 REMARK REVDAT 1 16-DEC-20 7KPG 0 JRNL AUTH T.C.KUO,A.CHEN,O.HARRABI,J.T.SOCKOLOSKY,A.ZHANG,E.SANGALANG, JRNL AUTH 2 L.V.DOYLE,S.E.KAUDER,D.FONTAINE,S.BOLLINI,B.HAN,Y.X.FU, JRNL AUTH 3 J.SIM,J.PONS,H.I.WAN JRNL TITL TARGETING THE MYELOID CHECKPOINT RECEPTOR SIRP ALPHA JRNL TITL 2 POTENTIATES INNATE AND ADAPTIVE IMMUNE RESPONSES TO PROMOTE JRNL TITL 3 ANTI-TUMOR ACTIVITY. JRNL REF J HEMATOL ONCOL V. 13 160 2020 JRNL REFN ISSN 1756-8722 JRNL PMID 33256806 JRNL DOI 10.1186/S13045-020-00989-W REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 36422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2635 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.495 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4170 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3618 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5691 ; 1.481 ; 1.668 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8504 ; 0.847 ; 1.637 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 8.352 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;34.629 ;22.670 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;16.282 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4678 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 766 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7KPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000252895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RIGAKU FR-E SUPERBRIGHT REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MICROMAX CONFOCAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38395 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 61.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17600 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.73000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2UV3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% W/V PEG 8000, 0.1 M CITRIC ACID PH REMARK 280 3.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.26667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.20000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.33333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.06667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.13333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.26667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.33333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.20000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 3 CG CD OE1 OE2 REMARK 470 VAL L 12 CG1 CG2 REMARK 470 VAL L 70 CG1 CG2 REMARK 470 LYS L 112 CG CD CE NZ REMARK 470 ASN L 130 CG OD1 ND2 REMARK 470 LYS L 173 CE NZ REMARK 470 CYS L 213 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU L 108 N GLN L 110 1.99 REMARK 500 O TRP L 150 CD PRO L 156 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 26 114.39 -164.48 REMARK 500 LYS L 38 -71.64 -70.54 REMARK 500 PRO L 39 -76.55 -123.78 REMARK 500 ASP L 50 -46.77 82.66 REMARK 500 ASP L 51 17.94 -151.19 REMARK 500 ALA L 83 175.78 177.85 REMARK 500 ASN L 130 18.26 106.25 REMARK 500 ALA L 152 33.59 -94.56 REMARK 500 ASP L 153 -31.85 77.07 REMARK 500 ARG L 191 -58.72 -124.18 REMARK 500 SER S 98 -79.26 -65.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 66 0.20 SIDE CHAIN REMARK 500 ARG S 77 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7KPG H 1 218 PDB 7KPG 7KPG 1 218 DBREF 7KPG L 3 214 PDB 7KPG 7KPG 3 214 DBREF 7KPG S 3 117 UNP P78324 SHPS1_HUMAN 33 147 SEQADV 7KPG ALA S 80 UNP P78324 ASN 110 CONFLICT SEQRES 1 H 212 ASP VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL ARG SEQRES 2 H 212 PRO GLY GLU SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 H 212 PHE THR PHE SER SER ASN ALA MET SER TRP VAL ARG GLN SEQRES 4 H 212 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA GLY ILE SER SEQRES 5 H 212 SER GLY SER ASP THR TYR TYR GLY ASP SER VAL LYS GLY SEQRES 6 H 212 ARG LEU THR ILE SER ARG ASP ASN SER LYS ASN ILE LEU SEQRES 7 H 212 TYR LEU GLN MET ASN SER LEU THR ALA GLU ASP THR ALA SEQRES 8 H 212 VAL TYR TYR CYS ALA ARG GLU THR TRP ASN HIS LEU PHE SEQRES 9 H 212 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 H 212 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 212 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 12 H 212 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 13 H 212 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 14 H 212 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 15 H 212 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 16 H 212 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 17 H 212 VAL GLU PRO LYS SEQRES 1 L 212 GLU LEU THR GLN PRO PRO SER VAL SER VAL SER PRO GLY SEQRES 2 L 212 GLN THR ALA ARG ILE THR CYS SER GLY GLY SER TYR SER SEQRES 3 L 212 SER TYR TYR TYR ALA TRP TYR GLN GLN LYS PRO GLY GLN SEQRES 4 L 212 ALA PRO VAL THR LEU ILE TYR SER ASP ASP LYS ARG PRO SEQRES 5 L 212 SER ASN ILE PRO GLU ARG PHE SER GLY SER SER SER GLY SEQRES 6 L 212 THR THR VAL THR LEU THR ILE THR GLY VAL GLN ALA GLU SEQRES 7 L 212 ASP GLU ALA ASP TYR TYR CYS GLY GLY TYR ASP GLN SER SEQRES 8 L 212 SER TYR THR ASN PRO PHE GLY GLY GLY THR LYS LEU THR SEQRES 9 L 212 VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR LEU SEQRES 10 L 212 PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS ALA SEQRES 11 L 212 THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY ALA SEQRES 12 L 212 VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL LYS SEQRES 13 L 212 ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER ASN SEQRES 14 L 212 ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR PRO SEQRES 15 L 212 GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN VAL SEQRES 16 L 212 THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA PRO SEQRES 17 L 212 THR GLU CYS SER SEQRES 1 S 115 GLU LEU GLN VAL ILE GLN PRO ASP LYS SER VAL LEU VAL SEQRES 2 S 115 ALA ALA GLY GLU THR ALA THR LEU ARG CYS THR ALA THR SEQRES 3 S 115 SER LEU ILE PRO VAL GLY PRO ILE GLN TRP PHE ARG GLY SEQRES 4 S 115 ALA GLY PRO GLY ARG GLU LEU ILE TYR ASN GLN LYS GLU SEQRES 5 S 115 GLY HIS PHE PRO ARG VAL THR THR VAL SER ASP LEU THR SEQRES 6 S 115 LYS ARG ASN ASN MET ASP PHE SER ILE ARG ILE GLY ALA SEQRES 7 S 115 ILE THR PRO ALA ASP ALA GLY THR TYR TYR CYS VAL LYS SEQRES 8 S 115 PHE ARG LYS GLY SER PRO ASP ASP VAL GLU PHE LYS SER SEQRES 9 S 115 GLY ALA GLY THR GLU LEU SER VAL ARG ALA LYS HET SO4 H 301 5 HET SO4 L 301 5 HET SO4 L 302 5 HET SO4 L 303 5 HET SO4 S 201 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *166(H2 O) HELIX 1 AA1 THR H 28 ASN H 32 5 5 HELIX 2 AA2 ASP H 61 LYS H 64 5 4 HELIX 3 AA3 ASN H 73 LYS H 75 5 3 HELIX 4 AA4 THR H 86 THR H 90 5 5 HELIX 5 AA5 SER H 160 ALA H 162 5 3 HELIX 6 AA6 SER H 191 GLY H 194 5 4 HELIX 7 AA7 LYS H 205 ASN H 208 5 4 HELIX 8 AA8 GLN L 78 GLU L 82 5 5 HELIX 9 AA9 SER L 123 ASN L 130 1 8 HELIX 10 AB1 THR L 183 HIS L 190 1 8 HELIX 11 AB2 THR S 82 ALA S 86 5 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 ILE H 77 MET H 82 -1 O LEU H 78 N CYS H 22 SHEET 4 AA1 4 LEU H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA2 6 ALA H 91 GLU H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O TYR H 58 N GLY H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA3 4 ALA H 91 GLU H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA3 4 PHE H 104 TRP H 107 -1 O TYR H 106 N ARG H 97 SHEET 1 AA4 4 SER H 124 LEU H 128 0 SHEET 2 AA4 4 THR H 139 TYR H 149 -1 O GLY H 143 N LEU H 128 SHEET 3 AA4 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AA4 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AA5 4 SER H 124 LEU H 128 0 SHEET 2 AA5 4 THR H 139 TYR H 149 -1 O GLY H 143 N LEU H 128 SHEET 3 AA5 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AA5 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AA6 3 THR H 155 TRP H 158 0 SHEET 2 AA6 3 TYR H 198 HIS H 204 -1 O ASN H 203 N THR H 155 SHEET 3 AA6 3 THR H 209 VAL H 215 -1 O THR H 209 N HIS H 204 SHEET 1 AA7 5 SER L 9 VAL L 12 0 SHEET 2 AA7 5 THR L 103 VAL L 107 1 O THR L 106 N VAL L 10 SHEET 3 AA7 5 ALA L 83 ASP L 91 -1 N TYR L 85 O THR L 103 SHEET 4 AA7 5 TYR L 30 GLN L 37 -1 N TYR L 35 O TYR L 86 SHEET 5 AA7 5 VAL L 44 ILE L 47 -1 O LEU L 46 N TRP L 34 SHEET 1 AA8 3 THR L 17 SER L 23 0 SHEET 2 AA8 3 THR L 69 THR L 75 -1 O LEU L 72 N ILE L 20 SHEET 3 AA8 3 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 AA9 4 SER L 116 PHE L 120 0 SHEET 2 AA9 4 ALA L 132 PHE L 141 -1 O SER L 139 N SER L 116 SHEET 3 AA9 4 TYR L 174 LEU L 182 -1 O LEU L 180 N LEU L 134 SHEET 4 AA9 4 GLY L 160 THR L 164 -1 N VAL L 161 O TYR L 179 SHEET 1 AB1 3 THR L 147 LYS L 151 0 SHEET 2 AB1 3 SER L 194 THR L 198 -1 O GLN L 196 N ALA L 149 SHEET 3 AB1 3 LYS L 206 VAL L 208 -1 O LYS L 206 N VAL L 197 SHEET 1 AB2 2 VAL S 6 ILE S 7 0 SHEET 2 AB2 2 THR S 26 ALA S 27 -1 O THR S 26 N ILE S 7 SHEET 1 AB3 5 SER S 12 ALA S 16 0 SHEET 2 AB3 5 THR S 110 ARG S 115 1 O SER S 113 N VAL S 13 SHEET 3 AB3 5 GLY S 87 ARG S 95 -1 N TYR S 89 O THR S 110 SHEET 4 AB3 5 ILE S 36 ARG S 40 -1 N GLN S 37 O VAL S 92 SHEET 5 AB3 5 GLU S 47 ASN S 51 -1 O ILE S 49 N TRP S 38 SHEET 1 AB4 4 SER S 12 ALA S 16 0 SHEET 2 AB4 4 THR S 110 ARG S 115 1 O SER S 113 N VAL S 13 SHEET 3 AB4 4 GLY S 87 ARG S 95 -1 N TYR S 89 O THR S 110 SHEET 4 AB4 4 VAL S 102 SER S 106 -1 O PHE S 104 N LYS S 93 SHEET 1 AB5 3 ALA S 21 LEU S 23 0 SHEET 2 AB5 3 ILE S 76 ILE S 78 -1 O ILE S 76 N LEU S 23 SHEET 3 AB5 3 VAL S 60 THR S 62 -1 N THR S 61 O ARG S 77 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.18 SSBOND 2 CYS H 144 CYS H 200 1555 1555 2.00 SSBOND 3 CYS L 22 CYS L 87 1555 1555 2.02 SSBOND 4 CYS L 136 CYS L 195 1555 1555 2.06 SSBOND 5 CYS S 25 CYS S 91 1555 1555 2.07 CISPEP 1 PHE H 150 PRO H 151 0 -10.72 CISPEP 2 GLU H 152 PRO H 153 0 -5.72 CISPEP 3 TYR L 142 PRO L 143 0 2.48 CISPEP 4 ILE S 31 PRO S 32 0 4.17 CRYST1 189.160 189.160 78.400 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005287 0.003052 0.000000 0.00000 SCALE2 0.000000 0.006104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012755 0.00000