HEADER TRANSFERASE 19-NOV-20 7KR9 TITLE BIFUNCTIONAL ENZYME GLMU BOUND TO ZN(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN GLMU; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.23,2.3.1.157; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 373153; SOURCE 4 STRAIN: D39 / NCTC 7466; SOURCE 5 GENE: GLMU, SPD_0874; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MAHER REVDAT 3 18-OCT-23 7KR9 1 REMARK REVDAT 2 26-JAN-22 7KR9 1 JRNL REVDAT 1 01-DEC-21 7KR9 0 JRNL AUTH E.B.BRAZEL,A.TAN,S.L.NEVILLE,A.R.IVERSON,S.R.UDAGEDARA, JRNL AUTH 2 B.A.CUNNINGHAM,M.SIKANYIKA,D.M.P.DE OLIVEIRA,B.KELLER, JRNL AUTH 3 L.BOHLMANN,I.M.EL-DEEB,K.GANIO,B.A.EIJKELKAMP,A.G.MCEWAN, JRNL AUTH 4 M.VON ITZSTEIN,M.J.MAHER,M.J.WALKER,J.W.ROSCH,C.A.MCDEVITT JRNL TITL DYSREGULATION OF STREPTOCOCCUS PNEUMONIAE ZINC HOMEOSTASIS JRNL TITL 2 BREAKS AMPICILLIN RESISTANCE IN A PNEUMONIA INFECTION MODEL. JRNL REF CELL REP V. 38 10202 2022 JRNL REFN ESSN 2211-1247 JRNL PMID 35021083 JRNL DOI 10.1016/J.CELREP.2021.110202 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2572 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3354 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.56000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.034 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3481 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3178 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4748 ; 1.551 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7355 ; 1.289 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 7.015 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;35.498 ;24.099 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;14.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3954 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 665 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1817 ; 1.586 ; 3.651 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1815 ; 1.573 ; 3.648 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2268 ; 2.448 ; 5.460 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2269 ; 2.448 ; 5.462 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1664 ; 1.982 ; 3.974 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1665 ; 1.981 ; 3.976 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2478 ; 3.150 ; 5.858 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3879 ; 6.467 ;46.320 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3824 ; 6.327 ;46.062 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 229 REMARK 3 RESIDUE RANGE : A 230 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3274 -17.4932 -43.1433 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0171 REMARK 3 T33: 0.0769 T12: 0.0107 REMARK 3 T13: 0.0092 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.2633 L22: 0.1002 REMARK 3 L33: 0.4121 L12: 0.1023 REMARK 3 L13: -0.1258 L23: -0.1571 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.0348 S13: -0.1363 REMARK 3 S21: -0.0181 S22: -0.0378 S23: -0.0549 REMARK 3 S31: 0.0265 S32: 0.0631 S33: 0.0461 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7KR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37206 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HM8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS-HCL, PH 7.2, 20% (V/V) PEG REMARK 280 400, 50 MM NACL, 300 MM CACL2, AND 1 MM ZNCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.43600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.80984 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 93.56767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.43600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.80984 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 93.56767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.43600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.80984 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.56767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.43600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.80984 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.56767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.43600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.80984 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.56767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.43600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.80984 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.56767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.61967 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 187.13533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.61967 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 187.13533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.61967 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 187.13533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.61967 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 187.13533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.61967 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 187.13533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.61967 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 187.13533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1902 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2243 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2247 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 62 REMARK 465 LEU A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 GLN A 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 HIS A 54 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 ASN A 146 CG OD1 ND2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 393 CG CD CE NZ REMARK 470 ARG A 451 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 457 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 229 O GLY A 251 3555 1.58 REMARK 500 O HOH A 2003 O HOH A 2204 2555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 103 72.43 -115.07 REMARK 500 GLU A 271 1.08 83.71 REMARK 500 LYS A 389 -56.62 -139.56 REMARK 500 GLU A 447 -2.66 70.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2280 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1904 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 315 OE1 REMARK 620 2 HIS A 330 NE2 99.8 REMARK 620 3 HOH A2235 O 108.4 107.8 REMARK 620 4 HOH A2250 O 118.9 113.6 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 405 OD1 REMARK 620 2 ASN A 405 OD1 0.0 REMARK 620 3 HOH A2032 O 92.5 92.5 REMARK 620 4 HOH A2032 O 163.7 163.7 84.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2009 O REMARK 620 2 HOH A2101 O 82.6 REMARK 620 N 1 DBREF 7KR9 A 1 459 UNP Q04KU2 GLMU_STRP2 1 459 SEQRES 1 A 459 MET SER ASN PHE ALA ILE ILE LEU ALA ALA GLY LYS GLY SEQRES 2 A 459 THR ARG MET LYS SER ASP LEU PRO LYS VAL LEU HIS LYS SEQRES 3 A 459 VAL ALA GLY ILE SER MET LEU GLU HIS VAL PHE ARG SER SEQRES 4 A 459 VAL GLY ALA ILE GLN PRO GLU LYS THR VAL THR VAL VAL SEQRES 5 A 459 GLY HIS LYS ALA GLU LEU VAL GLU GLU VAL LEU ALA GLU SEQRES 6 A 459 GLN THR GLU PHE VAL THR GLN SER GLU GLN LEU GLY THR SEQRES 7 A 459 GLY HIS ALA VAL MET MET THR GLU PRO ILE LEU GLU GLY SEQRES 8 A 459 LEU SER GLY HIS THR LEU VAL ILE ALA GLY ASP THR PRO SEQRES 9 A 459 LEU ILE THR GLY GLU SER LEU LYS ASN LEU ILE ASP PHE SEQRES 10 A 459 HIS ILE ASN HIS LYS ASN VAL ALA THR ILE LEU THR ALA SEQRES 11 A 459 GLU THR ASP ASN PRO PHE GLY TYR GLY ARG ILE VAL ARG SEQRES 12 A 459 ASN ASP ASN ALA GLU VAL LEU ARG ILE VAL GLU GLN LYS SEQRES 13 A 459 ASP ALA THR ASP PHE GLU LYS GLN ILE LYS GLU ILE ASN SEQRES 14 A 459 THR GLY THR TYR VAL PHE ASP ASN GLU ARG LEU PHE GLU SEQRES 15 A 459 ALA LEU LYS ASN ILE ASN THR ASN ASN ALA GLN GLY GLU SEQRES 16 A 459 TYR TYR ILE THR ASP VAL ILE GLY ILE PHE ARG GLU THR SEQRES 17 A 459 GLY GLU LYS VAL GLY ALA TYR THR LEU LYS ASP PHE ASP SEQRES 18 A 459 GLU SER LEU GLY VAL ASN ASP ARG VAL ALA LEU ALA THR SEQRES 19 A 459 ALA GLU SER VAL MET ARG ARG ARG ILE ASN HIS LYS HIS SEQRES 20 A 459 MET VAL ASN GLY VAL SER PHE VAL ASN PRO GLU ALA THR SEQRES 21 A 459 TYR ILE ASP ILE ASP VAL GLU ILE ALA PRO GLU VAL GLN SEQRES 22 A 459 ILE GLU ALA ASN VAL ILE LEU LYS GLY GLN THR LYS ILE SEQRES 23 A 459 GLY ALA GLU THR VAL LEU THR ASN GLY THR TYR VAL VAL SEQRES 24 A 459 ASP SER THR ILE GLY ALA GLY ALA VAL ILE THR ASN SER SEQRES 25 A 459 MET ILE GLU GLU SER SER VAL ALA ASP GLY VAL THR VAL SEQRES 26 A 459 GLY PRO TYR ALA HIS ILE ARG PRO ASN SER SER LEU GLY SEQRES 27 A 459 ALA GLN VAL HIS ILE GLY ASN PHE VAL GLU VAL LYS GLY SEQRES 28 A 459 SER SER ILE GLY GLU ASN THR LYS ALA GLY HIS LEU THR SEQRES 29 A 459 TYR ILE GLY ASN CYS GLU VAL GLY SER ASN VAL ASN PHE SEQRES 30 A 459 GLY ALA GLY THR ILE THR VAL ASN TYR ASP GLY LYS ASN SEQRES 31 A 459 LYS TYR LYS THR VAL ILE GLY ASP ASN VAL PHE VAL GLY SEQRES 32 A 459 SER ASN SER THR ILE ILE ALA PRO VAL GLU LEU GLY ASP SEQRES 33 A 459 ASN SER LEU VAL GLY ALA GLY SER THR ILE THR LYS ASP SEQRES 34 A 459 VAL PRO ALA ASP ALA ILE ALA ILE GLY ARG GLY ARG GLN SEQRES 35 A 459 ILE ASN LYS ASP GLU TYR ALA THR ARG LEU PRO HIS HIS SEQRES 36 A 459 PRO LYS ASN GLN HET CA A1901 1 HET CA A1902 1 HET ACO A1903 51 HET ZN A1904 1 HET GOL A1905 6 HETNAM CA CALCIUM ION HETNAM ACO ACETYL COENZYME *A HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 2(CA 2+) FORMUL 4 ACO C23 H38 N7 O17 P3 S FORMUL 5 ZN ZN 2+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *280(H2 O) HELIX 1 AA1 GLY A 13 LYS A 17 5 5 HELIX 2 AA2 PRO A 21 LEU A 24 5 4 HELIX 3 AA3 MET A 32 ALA A 42 1 11 HELIX 4 AA4 LYS A 55 GLU A 61 1 7 HELIX 5 AA5 LEU A 76 MET A 84 1 9 HELIX 6 AA6 THR A 85 GLU A 90 1 6 HELIX 7 AA7 THR A 107 HIS A 121 1 15 HELIX 8 AA8 THR A 159 GLN A 164 1 6 HELIX 9 AA9 ASN A 177 ASN A 191 1 15 HELIX 10 AB1 ILE A 198 GLY A 209 1 12 HELIX 11 AB2 ASP A 219 LEU A 224 5 6 HELIX 12 AB3 ASP A 228 ASN A 250 1 23 HELIX 13 AB4 ASN A 256 THR A 260 5 5 HELIX 14 AB5 GLU A 447 LEU A 452 5 6 HELIX 15 AB6 HIS A 455 GLN A 459 5 5 SHEET 1 AA1 7 GLU A 68 THR A 71 0 SHEET 2 AA1 7 LYS A 47 VAL A 52 1 N THR A 50 O GLU A 68 SHEET 3 AA1 7 ASN A 3 ALA A 9 1 N ALA A 9 O VAL A 51 SHEET 4 AA1 7 HIS A 95 ALA A 100 1 O LEU A 97 N PHE A 4 SHEET 5 AA1 7 GLU A 167 ASP A 176 -1 O TYR A 173 N VAL A 98 SHEET 6 AA1 7 ALA A 125 GLU A 131 -1 N ALA A 130 O ILE A 168 SHEET 7 AA1 7 VAL A 212 LEU A 217 1 O TYR A 215 N THR A 129 SHEET 1 AA2 2 LYS A 26 VAL A 27 0 SHEET 2 AA2 2 ILE A 30 SER A 31 -1 O ILE A 30 N VAL A 27 SHEET 1 AA3 2 ARG A 140 ARG A 143 0 SHEET 2 AA3 2 VAL A 149 VAL A 153 -1 O LEU A 150 N VAL A 142 SHEET 1 AA411 SER A 253 PHE A 254 0 SHEET 2 AA411 GLN A 273 ILE A 274 1 O ILE A 274 N SER A 253 SHEET 3 AA411 VAL A 291 LEU A 292 1 O LEU A 292 N GLN A 273 SHEET 4 AA411 VAL A 308 ILE A 309 1 O ILE A 309 N VAL A 291 SHEET 5 AA411 THR A 324 VAL A 325 1 O VAL A 325 N VAL A 308 SHEET 6 AA411 HIS A 342 LYS A 350 1 O ILE A 343 N THR A 324 SHEET 7 AA411 HIS A 330 ILE A 331 1 N HIS A 330 O VAL A 347 SHEET 8 AA411 MET A 313 GLU A 315 1 N MET A 313 O ILE A 331 SHEET 9 AA411 TYR A 297 VAL A 299 1 N VAL A 299 O ILE A 314 SHEET 10 AA411 ILE A 279 LYS A 281 1 N LYS A 281 O VAL A 298 SHEET 11 AA411 TYR A 261 ILE A 262 1 N TYR A 261 O LEU A 280 SHEET 1 AA511 SER A 253 PHE A 254 0 SHEET 2 AA511 GLN A 273 ILE A 274 1 O ILE A 274 N SER A 253 SHEET 3 AA511 VAL A 291 LEU A 292 1 O LEU A 292 N GLN A 273 SHEET 4 AA511 VAL A 308 ILE A 309 1 O ILE A 309 N VAL A 291 SHEET 5 AA511 THR A 324 VAL A 325 1 O VAL A 325 N VAL A 308 SHEET 6 AA511 HIS A 342 LYS A 350 1 O ILE A 343 N THR A 324 SHEET 7 AA511 LYS A 359 GLY A 367 1 O ILE A 366 N LYS A 350 SHEET 8 AA511 ASN A 376 PHE A 377 1 O PHE A 377 N LYS A 359 SHEET 9 AA511 PHE A 401 VAL A 402 1 O VAL A 402 N ASN A 376 SHEET 10 AA511 LEU A 419 VAL A 420 1 O VAL A 420 N PHE A 401 SHEET 11 AA511 ILE A 435 ALA A 436 1 O ALA A 436 N LEU A 419 SHEET 1 AA6 9 GLU A 267 ILE A 268 0 SHEET 2 AA6 9 LYS A 285 ILE A 286 1 O ILE A 286 N GLU A 267 SHEET 3 AA6 9 THR A 302 ILE A 303 1 O ILE A 303 N LYS A 285 SHEET 4 AA6 9 SER A 318 VAL A 319 1 O VAL A 319 N THR A 302 SHEET 5 AA6 9 SER A 336 LEU A 337 1 O LEU A 337 N SER A 318 SHEET 6 AA6 9 SER A 353 ILE A 354 1 O ILE A 354 N SER A 336 SHEET 7 AA6 9 CYS A 369 VAL A 371 1 O VAL A 371 N SER A 353 SHEET 8 AA6 9 THR A 394 ILE A 396 1 O ILE A 396 N GLU A 370 SHEET 9 AA6 9 GLU A 413 LEU A 414 1 O LEU A 414 N VAL A 395 SHEET 1 AA7 3 ILE A 382 VAL A 384 0 SHEET 2 AA7 3 THR A 407 ILE A 409 1 O ILE A 408 N VAL A 384 SHEET 3 AA7 3 THR A 425 ILE A 426 1 O ILE A 426 N THR A 407 LINK OE1 GLU A 315 ZN ZN A1904 1555 1555 1.91 LINK NE2 HIS A 330 ZN ZN A1904 1555 1555 2.06 LINK OD1 ASN A 405 CA CA A1902 1555 1555 2.32 LINK OD1 ASN A 405 CA CA A1902 1555 2555 2.32 LINK CA CA A1901 O HOH A2009 1555 1555 2.39 LINK CA CA A1901 O HOH A2101 1555 1555 2.37 LINK CA CA A1902 O HOH A2032 1555 1555 2.20 LINK CA CA A1902 O HOH A2032 1555 3555 2.20 LINK ZN ZN A1904 O HOH A2235 1555 1555 2.36 LINK ZN ZN A1904 O HOH A2250 1555 1555 2.28 CISPEP 1 GLY A 326 PRO A 327 0 1.00 CISPEP 2 ALA A 410 PRO A 411 0 -2.12 CRYST1 92.872 92.872 280.703 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010768 0.006217 0.000000 0.00000 SCALE2 0.000000 0.012433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003562 0.00000