HEADER ALLERGEN 21-NOV-20 7KSC TITLE CRYSTAL STRUCTURE OF PUN G 1.0101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC LIPID-TRANSFER PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PUNICA GRANATUM; SOURCE 3 ORGANISM_COMMON: POMEGRANATE; SOURCE 4 ORGANISM_TAXID: 22663; SOURCE 5 GENE: CRG98_038474; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32644 KEYWDS NSLTP, FOOD ALLERGEN, ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR S.POTE,A.O'MALLEY,A.GAWLICKA-CHRUSZCZ,L.TUPPO,M.A.CIARDIELLO, AUTHOR 2 M.CHRUSZCZ REVDAT 2 18-OCT-23 7KSC 1 REMARK REVDAT 1 20-JAN-21 7KSC 0 JRNL AUTH A.O'MALLEY,S.POTE,I.GIANGRIECO,L.TUPPO,A.GAWLICKA-CHRUSZCZ, JRNL AUTH 2 K.KOWAL,M.A.CIARDIELLO,M.CHRUSZCZ JRNL TITL STRUCTURAL CHARACTERIZATION OF ACT C 10.0101 AND PUN G JRNL TITL 2 1.0101-ALLERGENS FROM THE NON-SPECIFIC LIPID TRANSFER JRNL TITL 3 PROTEIN FAMILY. JRNL REF MOLECULES V. 26 2021 JRNL REFN ESSN 1420-3049 JRNL PMID 33419110 JRNL DOI 10.3390/MOLECULES26020256 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 10014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : 3.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.263 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.831 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2672 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2520 ; 0.036 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3654 ; 1.483 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5882 ; 2.337 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 4.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;23.555 ;19.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;13.827 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.078 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2944 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 464 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 93 B 1 93 2519 0.090 0.050 REMARK 3 2 A 1 93 C 1 93 2434 0.140 0.050 REMARK 3 3 A 1 93 D 1 93 2445 0.130 0.050 REMARK 3 4 B 1 93 C 1 93 2417 0.150 0.050 REMARK 3 5 B 1 93 D 1 93 2421 0.140 0.050 REMARK 3 6 C 1 93 D 1 93 2553 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2700 -15.4550 33.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.1470 REMARK 3 T33: 0.1454 T12: -0.0089 REMARK 3 T13: -0.0186 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.3405 L22: 0.9179 REMARK 3 L33: 1.3152 L12: 0.4730 REMARK 3 L13: 0.9043 L23: 0.3006 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: 0.0018 S13: 0.1752 REMARK 3 S21: -0.0222 S22: -0.0648 S23: 0.1710 REMARK 3 S31: 0.1448 S32: 0.0839 S33: 0.0239 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8750 -18.5050 35.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.0261 T22: 0.1873 REMARK 3 T33: 0.0776 T12: -0.0143 REMARK 3 T13: -0.0260 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.5524 L22: 12.2608 REMARK 3 L33: 5.9109 L12: 5.7075 REMARK 3 L13: -3.7661 L23: -3.6275 REMARK 3 S TENSOR REMARK 3 S11: -0.1064 S12: -0.0139 S13: -0.0110 REMARK 3 S21: 0.0066 S22: 0.0905 S23: 0.0008 REMARK 3 S31: 0.2823 S32: 0.0405 S33: 0.0159 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7200 -27.7550 28.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.0769 T22: 0.1408 REMARK 3 T33: 0.1035 T12: 0.0470 REMARK 3 T13: -0.0651 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 3.7818 L22: 5.1441 REMARK 3 L33: 8.6124 L12: 3.7892 REMARK 3 L13: 1.1925 L23: -1.8914 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: 0.0495 S13: 0.1856 REMARK 3 S21: 0.0720 S22: -0.0976 S23: 0.0951 REMARK 3 S31: 0.1467 S32: 0.1132 S33: 0.0241 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1740 -18.3740 6.5170 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.1082 REMARK 3 T33: 0.0703 T12: -0.0084 REMARK 3 T13: -0.0070 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 4.0147 L22: 0.5609 REMARK 3 L33: 1.3916 L12: 0.3460 REMARK 3 L13: 0.5390 L23: 0.5330 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.2267 S13: -0.0025 REMARK 3 S21: -0.0615 S22: -0.0371 S23: -0.0568 REMARK 3 S31: 0.0113 S32: 0.0114 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 73 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2410 -19.9190 2.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.1712 REMARK 3 T33: 0.1089 T12: 0.0360 REMARK 3 T13: -0.0263 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 7.0619 L22: 0.9513 REMARK 3 L33: 3.3027 L12: 2.3025 REMARK 3 L13: 1.8268 L23: 1.3416 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: -0.0877 S13: -0.0444 REMARK 3 S21: -0.0635 S22: 0.0491 S23: 0.0169 REMARK 3 S31: -0.0722 S32: 0.3882 S33: 0.0759 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 74 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5400 -29.4260 3.5420 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.1389 REMARK 3 T33: 0.1306 T12: 0.0399 REMARK 3 T13: 0.0012 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 2.9558 L22: 2.4157 REMARK 3 L33: 9.5791 L12: 2.0643 REMARK 3 L13: 0.2772 L23: 2.2819 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: -0.0615 S13: -0.0635 REMARK 3 S21: 0.0012 S22: -0.0639 S23: -0.1217 REMARK 3 S31: 0.0129 S32: -0.0936 S33: 0.1139 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 56 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6390 1.5230 28.8700 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.1869 REMARK 3 T33: 0.0975 T12: -0.0388 REMARK 3 T13: -0.0235 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.1027 L22: 0.1738 REMARK 3 L33: 1.8105 L12: -0.3594 REMARK 3 L13: -0.2242 L23: 0.1488 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: -0.1607 S13: -0.0636 REMARK 3 S21: -0.0258 S22: 0.0647 S23: 0.0667 REMARK 3 S31: 0.0325 S32: -0.0384 S33: -0.1298 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 57 C 82 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5110 6.0380 26.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.2558 REMARK 3 T33: 0.1997 T12: 0.0068 REMARK 3 T13: -0.0333 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 2.8267 L22: 7.0013 REMARK 3 L33: 0.6692 L12: 3.2267 REMARK 3 L13: 0.3731 L23: 0.9683 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.2248 S13: -0.3480 REMARK 3 S21: -0.0499 S22: -0.0119 S23: 0.1984 REMARK 3 S31: 0.1387 S32: -0.1486 S33: 0.0155 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 83 C 93 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3800 7.0120 15.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.2425 REMARK 3 T33: 0.1475 T12: -0.0156 REMARK 3 T13: -0.0075 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 9.9648 L22: 2.5688 REMARK 3 L33: 4.6083 L12: 2.2003 REMARK 3 L13: 2.1573 L23: 1.5482 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: -0.3215 S13: 0.5611 REMARK 3 S21: 0.3784 S22: -0.3677 S23: 0.3854 REMARK 3 S31: -0.0588 S32: -0.5784 S33: 0.3284 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 52 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9510 -0.8820 1.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.0437 T22: 0.2178 REMARK 3 T33: 0.1150 T12: -0.0010 REMARK 3 T13: -0.0338 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.0625 L22: 0.9505 REMARK 3 L33: 1.4450 L12: -0.5497 REMARK 3 L13: -0.4093 L23: 0.6577 REMARK 3 S TENSOR REMARK 3 S11: 0.0749 S12: -0.2228 S13: -0.0716 REMARK 3 S21: 0.0182 S22: -0.0277 S23: -0.0412 REMARK 3 S31: -0.0480 S32: 0.0896 S33: -0.0472 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 53 D 80 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4760 1.2400 -1.2710 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.2299 REMARK 3 T33: 0.1253 T12: 0.0284 REMARK 3 T13: -0.0454 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.9695 L22: 2.7906 REMARK 3 L33: 0.8580 L12: 1.7154 REMARK 3 L13: -1.1309 L23: -1.5302 REMARK 3 S TENSOR REMARK 3 S11: 0.1161 S12: 0.1084 S13: -0.1647 REMARK 3 S21: 0.0449 S22: -0.1389 S23: -0.0122 REMARK 3 S31: -0.0328 S32: 0.0581 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 81 D 93 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6030 5.1430 -12.4710 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.3153 REMARK 3 T33: 0.1446 T12: 0.0998 REMARK 3 T13: -0.0065 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 8.0115 L22: 7.6208 REMARK 3 L33: 13.1028 L12: 6.7431 REMARK 3 L13: 5.9176 L23: 0.9227 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: -0.2658 S13: 0.5511 REMARK 3 S21: 0.1099 S22: -0.1135 S23: 0.5934 REMARK 3 S31: -0.3795 S32: -0.7118 S33: 0.1401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7KSC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5TVI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.6 AND 2.0 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.71200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 93 CG CD CE NZ REMARK 470 LYS D 93 CG CD CE NZ DBREF1 7KSC A 1 93 UNP A0A059STC4_PUNGR DBREF2 7KSC A A0A059STC4 28 120 DBREF1 7KSC B 1 93 UNP A0A059STC4_PUNGR DBREF2 7KSC B A0A059STC4 28 120 DBREF1 7KSC C 1 93 UNP A0A059STC4_PUNGR DBREF2 7KSC C A0A059STC4 28 120 DBREF1 7KSC D 1 93 UNP A0A059STC4_PUNGR DBREF2 7KSC D A0A059STC4 28 120 SEQRES 1 A 93 ALA VAL THR CYS GLY GLN VAL ALA SER SER LEU ALA PRO SEQRES 2 A 93 CYS ILE PRO TYR ALA ARG SER ALA GLY GLY ALA VAL PRO SEQRES 3 A 93 PRO ALA CYS CYS SER GLY ILE LYS THR LEU ASP GLY MET SEQRES 4 A 93 ALA ARG THR THR PRO ASP ARG GLN ALA THR CYS LYS CYS SEQRES 5 A 93 LEU LYS SER ALA SER THR SER ILE SER GLY ILE ASN TYR SEQRES 6 A 93 GLY LEU VAL ALA SER LEU PRO ALA LYS CYS GLY VAL ASN SEQRES 7 A 93 ILE PRO TYR LYS ILE SER PRO SER THR ASP CYS ALA ARG SEQRES 8 A 93 VAL LYS SEQRES 1 B 93 ALA VAL THR CYS GLY GLN VAL ALA SER SER LEU ALA PRO SEQRES 2 B 93 CYS ILE PRO TYR ALA ARG SER ALA GLY GLY ALA VAL PRO SEQRES 3 B 93 PRO ALA CYS CYS SER GLY ILE LYS THR LEU ASP GLY MET SEQRES 4 B 93 ALA ARG THR THR PRO ASP ARG GLN ALA THR CYS LYS CYS SEQRES 5 B 93 LEU LYS SER ALA SER THR SER ILE SER GLY ILE ASN TYR SEQRES 6 B 93 GLY LEU VAL ALA SER LEU PRO ALA LYS CYS GLY VAL ASN SEQRES 7 B 93 ILE PRO TYR LYS ILE SER PRO SER THR ASP CYS ALA ARG SEQRES 8 B 93 VAL LYS SEQRES 1 C 93 ALA VAL THR CYS GLY GLN VAL ALA SER SER LEU ALA PRO SEQRES 2 C 93 CYS ILE PRO TYR ALA ARG SER ALA GLY GLY ALA VAL PRO SEQRES 3 C 93 PRO ALA CYS CYS SER GLY ILE LYS THR LEU ASP GLY MET SEQRES 4 C 93 ALA ARG THR THR PRO ASP ARG GLN ALA THR CYS LYS CYS SEQRES 5 C 93 LEU LYS SER ALA SER THR SER ILE SER GLY ILE ASN TYR SEQRES 6 C 93 GLY LEU VAL ALA SER LEU PRO ALA LYS CYS GLY VAL ASN SEQRES 7 C 93 ILE PRO TYR LYS ILE SER PRO SER THR ASP CYS ALA ARG SEQRES 8 C 93 VAL LYS SEQRES 1 D 93 ALA VAL THR CYS GLY GLN VAL ALA SER SER LEU ALA PRO SEQRES 2 D 93 CYS ILE PRO TYR ALA ARG SER ALA GLY GLY ALA VAL PRO SEQRES 3 D 93 PRO ALA CYS CYS SER GLY ILE LYS THR LEU ASP GLY MET SEQRES 4 D 93 ALA ARG THR THR PRO ASP ARG GLN ALA THR CYS LYS CYS SEQRES 5 D 93 LEU LYS SER ALA SER THR SER ILE SER GLY ILE ASN TYR SEQRES 6 D 93 GLY LEU VAL ALA SER LEU PRO ALA LYS CYS GLY VAL ASN SEQRES 7 D 93 ILE PRO TYR LYS ILE SER PRO SER THR ASP CYS ALA ARG SEQRES 8 D 93 VAL LYS HET SO4 A 101 5 HET SO4 B 101 5 HET SO4 B 102 5 HET SO4 C 101 5 HET SO4 C 102 5 HET SO4 C 103 5 HET SO4 D 101 5 HET SO4 D 102 5 HET SO4 D 103 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 9(O4 S 2-) FORMUL 14 HOH *47(H2 O) HELIX 1 AA1 THR A 3 ALA A 12 1 10 HELIX 2 AA2 CYS A 14 ARG A 19 1 6 HELIX 3 AA3 PRO A 26 ALA A 40 1 15 HELIX 4 AA4 THR A 42 THR A 58 1 17 HELIX 5 AA5 ASN A 64 CYS A 75 1 12 HELIX 6 AA6 ASP A 88 VAL A 92 5 5 HELIX 7 AA7 THR B 3 ALA B 12 1 10 HELIX 8 AA8 CYS B 14 ARG B 19 1 6 HELIX 9 AA9 PRO B 26 ALA B 40 1 15 HELIX 10 AB1 THR B 42 SER B 59 1 18 HELIX 11 AB2 ASN B 64 CYS B 75 1 12 HELIX 12 AB3 ASP B 88 VAL B 92 5 5 HELIX 13 AB4 THR C 3 ALA C 12 1 10 HELIX 14 AB5 CYS C 14 ARG C 19 1 6 HELIX 15 AB6 PRO C 26 ALA C 40 1 15 HELIX 16 AB7 THR C 42 THR C 58 1 17 HELIX 17 AB8 ASN C 64 CYS C 75 1 12 HELIX 18 AB9 ASP C 88 VAL C 92 5 5 HELIX 19 AC1 THR D 3 ALA D 12 1 10 HELIX 20 AC2 CYS D 14 ARG D 19 1 6 HELIX 21 AC3 PRO D 26 ALA D 40 1 15 HELIX 22 AC4 THR D 42 SER D 59 1 18 HELIX 23 AC5 ASN D 64 SER D 70 1 7 HELIX 24 AC6 SER D 70 CYS D 75 1 6 HELIX 25 AC7 ASP D 88 VAL D 92 5 5 SSBOND 1 CYS A 4 CYS A 52 1555 1555 2.06 SSBOND 2 CYS A 14 CYS A 29 1555 1555 2.07 SSBOND 3 CYS A 30 CYS A 75 1555 1555 2.10 SSBOND 4 CYS A 50 CYS A 89 1555 1555 2.12 SSBOND 5 CYS B 4 CYS B 52 1555 1555 2.09 SSBOND 6 CYS B 14 CYS B 29 1555 1555 2.06 SSBOND 7 CYS B 30 CYS B 75 1555 1555 2.09 SSBOND 8 CYS B 50 CYS B 89 1555 1555 2.09 SSBOND 9 CYS C 4 CYS C 52 1555 1555 2.09 SSBOND 10 CYS C 14 CYS C 29 1555 1555 2.08 SSBOND 11 CYS C 30 CYS C 75 1555 1555 2.14 SSBOND 12 CYS C 50 CYS C 89 1555 1555 2.08 SSBOND 13 CYS D 4 CYS D 52 1555 1555 2.12 SSBOND 14 CYS D 14 CYS D 29 1555 1555 2.08 SSBOND 15 CYS D 30 CYS D 75 1555 1555 2.07 SSBOND 16 CYS D 50 CYS D 89 1555 1555 2.04 CRYST1 29.522 89.424 58.940 90.00 102.79 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033873 0.000000 0.007691 0.00000 SCALE2 0.000000 0.011183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017398 0.00000